Wall clock time and date at job start Tue Mar 31 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86795 * 120.00001 * 2 1 4 4 H 1.48501 * 109.47012 * 274.97757 * 3 2 1 5 5 H 1.48500 * 109.47567 * 34.97930 * 3 2 1 6 6 H 1.48504 * 109.46924 * 154.98003 * 3 2 1 7 7 C 1.39904 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00311 * 197.78005 * 7 2 1 9 9 C 1.41160 * 120.00083 * 17.77995 * 7 2 1 10 10 C 1.40876 * 120.16091 * 25.02497 * 9 7 2 11 11 C 1.36370 * 119.82773 * 180.25102 * 10 9 7 12 12 C 1.39486 * 120.16515 * 359.48291 * 11 10 9 13 13 N 1.39237 * 119.82855 * 180.29933 * 12 11 10 14 14 C 1.34773 * 120.00231 * 324.05356 * 13 12 11 15 15 O 1.21277 * 120.00080 * 5.19122 * 14 13 12 16 16 C 1.50699 * 120.00132 * 185.18464 * 14 13 12 17 17 C 1.53000 * 109.47422 * 180.02562 * 16 14 13 18 18 S 1.81400 * 109.47310 * 180.02562 * 17 16 14 19 19 C 1.81404 * 102.99823 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.46969 * 179.97438 * 19 18 17 21 21 C 1.38233 * 120.00178 * 269.72429 * 20 19 18 22 22 C 1.38230 * 120.00065 * 179.76572 * 21 20 19 23 23 C 1.38244 * 119.99826 * 0.51025 * 22 21 20 24 24 C 1.38226 * 120.00038 * 359.74399 * 23 22 21 25 25 C 1.38234 * 120.00260 * 0.02562 * 24 23 22 26 26 C 1.39475 * 120.33671 * 0.27384 * 12 11 10 27 27 C 1.36379 * 120.16847 * 359.97438 * 26 12 11 28 28 H 0.97000 * 119.99698 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.08683 * 0.03419 * 10 9 7 30 30 H 1.07998 * 119.92010 * 179.75706 * 11 10 9 31 31 H 0.97007 * 119.99801 * 144.06384 * 13 12 11 32 32 H 1.09004 * 109.47468 * 300.00580 * 16 14 13 33 33 H 1.09004 * 109.47340 * 60.00182 * 16 14 13 34 34 H 1.09010 * 109.46695 * 300.00090 * 17 16 14 35 35 H 1.08995 * 109.47154 * 59.99434 * 17 16 14 36 36 H 1.08996 * 109.47139 * 299.99697 * 19 18 17 37 37 H 1.09000 * 109.47021 * 59.99959 * 19 18 17 38 38 H 1.08003 * 119.99753 * 0.02562 * 21 20 19 39 39 H 1.08002 * 120.00123 * 180.23367 * 22 21 20 40 40 H 1.08003 * 119.99513 * 179.72247 * 23 22 21 41 41 H 1.07999 * 120.00329 * 179.97438 * 24 23 22 42 42 H 1.07991 * 120.00540 * 179.97438 * 25 24 23 43 43 H 1.07999 * 119.92030 * 180.02562 * 26 12 11 44 44 H 1.07998 * 120.08680 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3850 2.1071 -1.3948 5 1 1.4969 2.6200 0.8026 6 1 3.5890 1.4120 0.5922 7 6 2.0083 -1.2116 0.0005 8 1 3.0495 -1.2339 0.2861 9 6 1.3530 -2.4051 -0.3722 10 6 0.2277 -2.3601 -1.2186 11 6 -0.4032 -3.5168 -1.5703 12 6 0.0695 -4.7430 -1.1029 13 7 -0.5763 -5.9202 -1.4714 14 6 -1.9168 -5.9386 -1.6098 15 8 -2.5513 -4.9103 -1.5059 16 6 -2.6273 -7.2369 -1.8936 17 6 -4.1318 -6.9814 -2.0045 18 16 -4.9871 -8.5443 -2.3455 19 6 -6.7283 -8.0444 -2.4397 20 6 -7.5831 -9.2527 -2.7235 21 6 -7.8611 -9.6115 -4.0292 22 6 -8.6412 -10.7225 -4.2895 23 6 -9.1521 -11.4688 -3.2439 24 6 -8.8784 -11.1070 -1.9382 25 6 -8.0944 -9.9987 -1.6779 26 6 1.1861 -4.7960 -0.2687 27 6 1.8245 -3.6473 0.0957 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1365 -1.4117 -1.5851 30 1 -1.2684 -3.4837 -2.2158 31 1 -0.0614 -6.7272 -1.6284 32 1 -2.2601 -7.6547 -2.8310 33 1 -2.4367 -7.9403 -1.0830 34 1 -4.4993 -6.5634 -1.0672 35 1 -4.3221 -6.2782 -2.8152 36 1 -7.0305 -7.5998 -1.4916 37 1 -6.8541 -7.3149 -3.2397 38 1 -7.4654 -9.0261 -4.8460 39 1 -8.8553 -11.0051 -5.3097 40 1 -9.7652 -12.3343 -3.4474 41 1 -9.2778 -11.6897 -1.1213 42 1 -7.8809 -9.7157 -0.6578 43 1 1.5466 -5.7492 0.0889 44 1 2.6892 -3.6899 0.7413 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013687968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:40 Heat of formation + Delta-G solvation = -1.933594 kcal Electronic energy + Delta-G solvation = -24317.916571 eV Core-core repulsion = 20711.380500 eV Total energy + Delta-G solvation = -3606.536071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.119 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.68900 -39.53015 -37.31968 -34.51495 -33.20603 -33.09255 -32.69407 -31.24388 -29.50732 -29.03099 -27.50372 -25.65898 -23.94576 -22.92822 -21.77855 -21.37145 -20.83463 -19.50222 -17.34126 -17.26776 -17.10141 -16.48179 -15.90357 -15.85035 -15.52361 -15.51285 -15.17780 -14.39623 -14.04509 -13.89902 -13.78654 -13.71817 -13.21581 -13.16287 -12.85823 -12.71093 -12.47284 -12.33456 -12.02907 -11.84653 -11.57626 -11.44098 -11.40808 -11.33842 -11.14586 -10.93719 -10.52589 -10.26160 -9.96238 -9.88184 -9.45915 -9.26731 -9.13538 -8.99347 -8.68084 -7.87036 -7.53612 -7.04169 -6.75648 -4.30806 0.67778 1.06415 1.67409 2.36467 2.56892 2.97926 3.06811 3.10023 3.10943 3.33512 3.51278 3.79923 3.92594 4.27422 4.41835 4.61563 4.65908 4.67864 4.78047 4.83188 4.86888 5.12802 5.14101 5.20759 5.27548 5.46213 5.61650 5.62100 5.69092 5.70594 5.80212 6.09608 6.14022 6.16363 6.21702 6.39522 6.62928 6.79456 6.98356 7.04057 7.14638 7.28165 7.58962 7.66303 7.95449 8.04681 8.19431 8.30232 8.61886 8.75053 8.87266 8.99512 10.17523 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029171 B = 0.001562 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.614743 B =17918.217284 C =18474.488878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.107 3.893 10 C -0.158 4.158 11 C -0.085 4.085 12 C -0.012 4.012 13 N -0.650 5.650 14 C 0.502 3.498 15 O -0.530 6.530 16 C -0.122 4.122 17 C -0.069 4.069 18 S -0.255 6.255 19 C -0.047 4.047 20 C -0.071 4.071 21 C -0.101 4.101 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.101 4.101 26 C -0.102 4.102 27 C -0.217 4.217 28 H 0.281 0.719 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.395 0.605 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.090 0.910 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.546 -18.841 -6.260 24.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.489 4.489 8 H 0.097 0.903 9 C 0.104 3.896 10 C -0.178 4.178 11 C -0.105 4.105 12 C -0.104 4.104 13 N -0.293 5.293 14 C 0.286 3.714 15 O -0.407 6.407 16 C -0.164 4.164 17 C -0.217 4.217 18 S -0.025 6.025 19 C -0.194 4.194 20 C -0.072 4.072 21 C -0.121 4.121 22 C -0.139 4.139 23 C -0.137 4.137 24 C -0.139 4.139 25 C -0.121 4.121 26 C -0.122 4.122 27 C -0.237 4.237 28 H 0.092 0.908 29 H 0.137 0.863 30 H 0.124 0.876 31 H 0.229 0.771 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.108 0.892 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.759 -18.927 -6.262 24.804 hybrid contribution 0.079 1.525 0.211 1.542 sum -14.680 -17.402 -6.051 23.557 Atomic orbital electron populations 1.69869 1.07584 1.29310 1.34483 1.25949 0.94727 1.01403 0.92325 0.86292 0.80572 0.80664 0.79158 1.19318 1.20281 1.18538 1.19572 0.98136 0.91295 1.39851 0.90326 1.17684 0.91172 0.92078 0.88681 1.20994 0.99103 0.96799 1.00943 1.20539 0.98816 0.91546 0.99551 1.17187 0.99846 0.84984 1.08381 1.42934 1.06171 1.12425 1.67759 1.20362 0.82543 0.90341 0.78109 1.90713 1.65864 1.34265 1.49831 1.21325 0.93293 0.97013 1.04746 1.23114 0.96468 0.95949 1.06218 1.86932 1.03381 1.17308 1.94924 1.22279 0.93151 0.98268 1.05716 1.19245 0.97862 0.96283 0.93858 1.21076 0.97918 0.97142 0.95967 1.21150 0.98043 0.95417 0.99294 1.21205 0.99839 0.99713 0.92896 1.21148 0.98736 0.97085 0.96924 1.21083 0.97087 0.95025 0.98893 1.20066 0.96844 0.97207 0.98129 1.20547 1.03910 0.92498 1.06716 0.90774 0.86329 0.87629 0.77147 0.88395 0.88283 0.89093 0.89136 0.88965 0.88985 0.85756 0.85871 0.86032 0.85865 0.85739 0.89204 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.80 10.98 55.55 0.61 -20.19 16 2 C 0.07 1.88 5.13 -17.33 -0.09 1.79 16 3 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 7 C -0.46 -12.19 9.03 -37.85 -0.34 -12.53 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 9 C 0.11 2.86 5.57 -106.80 -0.59 2.26 16 10 C -0.16 -4.25 8.63 -39.26 -0.34 -4.59 16 11 C -0.08 -2.11 8.61 -39.79 -0.34 -2.45 16 12 C -0.01 -0.26 6.30 -83.57 -0.53 -0.79 16 13 N -0.65 -11.21 5.30 -9.74 -0.05 -11.27 16 14 C 0.50 8.53 7.66 -10.99 -0.08 8.44 16 15 O -0.53 -11.38 13.42 5.56 0.07 -11.30 16 16 C -0.12 -1.45 5.71 -27.88 -0.16 -1.61 16 17 C -0.07 -0.82 5.23 37.16 0.19 -0.63 16 18 S -0.26 -2.74 21.72 -107.50 -2.33 -5.08 16 19 C -0.05 -0.42 6.07 36.01 0.22 -0.20 16 20 C -0.07 -0.64 5.14 -104.62 -0.54 -1.17 16 21 C -0.10 -0.84 9.70 -39.59 -0.38 -1.23 16 22 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 23 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 24 C -0.12 -0.90 10.05 -39.59 -0.40 -1.29 16 25 C -0.10 -0.85 9.70 -39.58 -0.38 -1.23 16 26 C -0.10 -2.24 9.90 -39.79 -0.39 -2.64 16 27 C -0.22 -5.25 9.74 -39.26 -0.38 -5.64 16 28 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 29 H 0.12 3.30 6.19 -52.48 -0.32 2.98 16 30 H 0.11 2.64 6.24 -52.49 -0.33 2.31 16 31 H 0.40 5.21 8.82 -40.82 -0.36 4.85 16 32 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.16 8.10 -51.92 -0.42 0.74 16 35 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 36 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 37 H 0.09 0.76 8.08 -51.92 -0.42 0.34 16 38 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 40 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 42 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 43 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 44 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 387.12 15.07 5.83 5.83 Total: -1.00 -31.16 387.12 -12.29 -43.45 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.05 Total: 10.89 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -5.34 Total: -26.01 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.56 Total: -31.46 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.07 Total: -11.30 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.33 Total: -5.08 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.16 -12.29 -43.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013687968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.517 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds