Wall clock time and date at job start Tue Mar 31 2020 06:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86795 * 120.00001 * 2 1 4 4 H 1.48501 * 109.47012 * 274.97757 * 3 2 1 5 5 H 1.48500 * 109.47567 * 34.97930 * 3 2 1 6 6 H 1.48504 * 109.46924 * 154.98003 * 3 2 1 7 7 C 1.39904 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00311 * 197.78005 * 7 2 1 9 9 C 1.41160 * 120.00083 * 17.77995 * 7 2 1 10 10 C 1.40876 * 120.16091 * 25.02497 * 9 7 2 11 11 C 1.36370 * 119.82773 * 180.25102 * 10 9 7 12 12 C 1.39486 * 120.16515 * 359.48291 * 11 10 9 13 13 N 1.39237 * 119.82855 * 180.29933 * 12 11 10 14 14 C 1.34773 * 120.00231 * 324.05356 * 13 12 11 15 15 O 1.21277 * 120.00080 * 5.19122 * 14 13 12 16 16 C 1.50699 * 120.00132 * 185.18464 * 14 13 12 17 17 C 1.53000 * 109.47422 * 180.02562 * 16 14 13 18 18 S 1.81400 * 109.47310 * 180.02562 * 17 16 14 19 19 C 1.81404 * 102.99823 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.46969 * 179.97438 * 19 18 17 21 21 C 1.38233 * 120.00178 * 269.72429 * 20 19 18 22 22 C 1.38230 * 120.00065 * 179.76572 * 21 20 19 23 23 C 1.38244 * 119.99826 * 0.51025 * 22 21 20 24 24 C 1.38226 * 120.00038 * 359.74399 * 23 22 21 25 25 C 1.38234 * 120.00260 * 0.02562 * 24 23 22 26 26 C 1.39475 * 120.33671 * 0.27384 * 12 11 10 27 27 C 1.36379 * 120.16847 * 359.97438 * 26 12 11 28 28 H 0.97000 * 119.99698 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.08683 * 0.03419 * 10 9 7 30 30 H 1.07998 * 119.92010 * 179.75706 * 11 10 9 31 31 H 0.97007 * 119.99801 * 144.06384 * 13 12 11 32 32 H 1.09004 * 109.47468 * 300.00580 * 16 14 13 33 33 H 1.09004 * 109.47340 * 60.00182 * 16 14 13 34 34 H 1.09010 * 109.46695 * 300.00090 * 17 16 14 35 35 H 1.08995 * 109.47154 * 59.99434 * 17 16 14 36 36 H 1.08996 * 109.47139 * 299.99697 * 19 18 17 37 37 H 1.09000 * 109.47021 * 59.99959 * 19 18 17 38 38 H 1.08003 * 119.99753 * 0.02562 * 21 20 19 39 39 H 1.08002 * 120.00123 * 180.23367 * 22 21 20 40 40 H 1.08003 * 119.99513 * 179.72247 * 23 22 21 41 41 H 1.07999 * 120.00329 * 179.97438 * 24 23 22 42 42 H 1.07991 * 120.00540 * 179.97438 * 25 24 23 43 43 H 1.07999 * 119.92030 * 180.02562 * 26 12 11 44 44 H 1.07998 * 120.08680 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3850 2.1071 -1.3948 5 1 1.4969 2.6200 0.8026 6 1 3.5890 1.4120 0.5922 7 6 2.0083 -1.2116 0.0005 8 1 3.0495 -1.2339 0.2861 9 6 1.3530 -2.4051 -0.3722 10 6 0.2277 -2.3601 -1.2186 11 6 -0.4032 -3.5168 -1.5703 12 6 0.0695 -4.7430 -1.1029 13 7 -0.5763 -5.9202 -1.4714 14 6 -1.9168 -5.9386 -1.6098 15 8 -2.5513 -4.9103 -1.5059 16 6 -2.6273 -7.2369 -1.8936 17 6 -4.1318 -6.9814 -2.0045 18 16 -4.9871 -8.5443 -2.3455 19 6 -6.7283 -8.0444 -2.4397 20 6 -7.5831 -9.2527 -2.7235 21 6 -7.8611 -9.6115 -4.0292 22 6 -8.6412 -10.7225 -4.2895 23 6 -9.1521 -11.4688 -3.2439 24 6 -8.8784 -11.1070 -1.9382 25 6 -8.0944 -9.9987 -1.6779 26 6 1.1861 -4.7960 -0.2687 27 6 1.8245 -3.6473 0.0957 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1365 -1.4117 -1.5851 30 1 -1.2684 -3.4837 -2.2158 31 1 -0.0614 -6.7272 -1.6284 32 1 -2.2601 -7.6547 -2.8310 33 1 -2.4367 -7.9403 -1.0830 34 1 -4.4993 -6.5634 -1.0672 35 1 -4.3221 -6.2782 -2.8152 36 1 -7.0305 -7.5998 -1.4916 37 1 -6.8541 -7.3149 -3.2397 38 1 -7.4654 -9.0261 -4.8460 39 1 -8.8553 -11.0051 -5.3097 40 1 -9.7652 -12.3343 -3.4474 41 1 -9.2778 -11.6897 -1.1213 42 1 -7.8809 -9.7157 -0.6578 43 1 1.5466 -5.7492 0.0889 44 1 2.6892 -3.6899 0.7413 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013687968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:39 Heat of formation + Delta-G solvation = -16.785614 kcal Electronic energy + Delta-G solvation = -24318.560603 eV Core-core repulsion = 20711.380500 eV Total energy + Delta-G solvation = -3607.180103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.119 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.21733 -40.09514 -39.11095 -36.24167 -34.76468 -33.92447 -33.79816 -31.79871 -31.41916 -30.84719 -28.18478 -27.24728 -25.34396 -23.48869 -23.23061 -22.70453 -22.21218 -21.01615 -19.25921 -18.52675 -18.06811 -17.68731 -17.11436 -16.85922 -16.80925 -16.21374 -16.09592 -15.80084 -15.59772 -15.32023 -14.71656 -14.65210 -14.40034 -14.31112 -14.00142 -13.89068 -13.77585 -13.66434 -13.42416 -13.33853 -13.02184 -12.82652 -12.68087 -12.40136 -12.32811 -12.03099 -11.91303 -11.74322 -11.70384 -11.23737 -11.11601 -10.78411 -10.44277 -9.83878 -9.62286 -9.46224 -8.89773 -8.71085 -8.63138 -6.28328 -0.00143 0.49372 0.80439 0.90791 1.13563 1.37227 1.44057 1.52169 1.54430 1.78850 2.19874 2.43626 2.75009 2.93525 3.59721 3.68224 3.73016 3.80752 3.90797 3.99723 4.14656 4.23633 4.29142 4.43461 4.46869 4.49893 4.53175 4.63099 4.68316 4.72636 4.84757 4.98739 5.06120 5.09941 5.14875 5.19156 5.29748 5.43686 5.54588 5.61431 5.62227 5.67852 5.86693 6.08267 6.08427 6.09968 6.33434 6.66996 6.72974 6.91630 7.00194 7.41748 8.32174 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029171 B = 0.001562 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.614743 B =17918.217284 C =18474.488878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.030 3.970 3 Si 0.985 3.015 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.253 1.253 7 C -0.495 4.495 8 H 0.082 0.918 9 C 0.073 3.927 10 C -0.183 4.183 11 C -0.100 4.100 12 C 0.003 3.997 13 N -0.642 5.642 14 C 0.500 3.500 15 O -0.579 6.579 16 C -0.106 4.106 17 C -0.068 4.068 18 S -0.254 6.254 19 C -0.043 4.043 20 C -0.087 4.087 21 C -0.114 4.114 22 C -0.128 4.128 23 C -0.121 4.121 24 C -0.128 4.128 25 C -0.115 4.115 26 C -0.097 4.097 27 C -0.225 4.225 28 H 0.287 0.713 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.420 0.580 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.130 0.870 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.129 0.871 43 H 0.135 0.865 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.518 -21.452 -6.386 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.184 4.184 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.524 4.524 8 H 0.100 0.900 9 C 0.070 3.930 10 C -0.203 4.203 11 C -0.120 4.120 12 C -0.091 4.091 13 N -0.287 5.287 14 C 0.288 3.712 15 O -0.458 6.458 16 C -0.147 4.147 17 C -0.217 4.217 18 S -0.024 6.024 19 C -0.191 4.191 20 C -0.089 4.089 21 C -0.134 4.134 22 C -0.146 4.146 23 C -0.140 4.140 24 C -0.146 4.146 25 C -0.135 4.135 26 C -0.117 4.117 27 C -0.245 4.245 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.258 0.742 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.148 0.852 39 H 0.160 0.840 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.147 0.853 43 H 0.153 0.847 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.715 -21.599 -6.397 26.907 hybrid contribution -0.088 2.112 0.206 2.124 sum -14.803 -19.487 -6.191 25.243 Atomic orbital electron populations 1.69949 1.09300 1.30518 1.35708 1.26868 0.95416 1.04913 0.91222 0.85145 0.79256 0.75707 0.79311 1.18833 1.19473 1.17608 1.19847 0.98517 0.92381 1.41647 0.89986 1.18030 0.91760 0.93648 0.89518 1.20890 1.00366 0.96600 1.02469 1.20593 0.98724 0.92578 1.00111 1.17273 0.99380 0.85765 1.06643 1.42862 1.06630 1.11744 1.67492 1.21289 0.82175 0.91546 0.76214 1.90709 1.66823 1.36663 1.51633 1.21288 0.92376 0.94052 1.06958 1.23004 0.96900 0.96673 1.05131 1.86855 1.04678 1.16008 1.94843 1.22324 0.91948 0.98679 1.06101 1.19317 0.98547 0.96566 0.94438 1.21269 0.98408 0.97780 0.95954 1.21452 0.97556 0.95014 1.00531 1.21552 0.99561 1.00203 0.92647 1.21445 0.98352 0.96879 0.97891 1.21270 0.97561 0.95536 0.99086 1.20437 0.95936 0.98398 0.96955 1.20833 1.04476 0.92451 1.06724 0.90274 0.88733 0.88544 0.74245 0.85643 0.85794 0.90478 0.90258 0.88672 0.88587 0.85234 0.83983 0.83776 0.84018 0.85303 0.84696 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.80 10.98 21.82 0.24 -45.56 16 2 C 0.03 1.58 5.13 85.24 0.44 2.01 16 3 Si 0.99 39.12 29.59 68.60 2.03 41.15 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 6 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 7 C -0.49 -27.11 9.03 23.39 0.21 -26.90 16 8 H 0.08 4.25 7.91 -2.91 -0.02 4.23 16 9 C 0.07 4.04 5.57 -21.27 -0.12 3.93 16 10 C -0.18 -10.34 8.63 22.48 0.19 -10.14 16 11 C -0.10 -5.14 8.61 22.13 0.19 -4.95 16 12 C 0.00 0.13 6.30 38.56 0.24 0.37 16 13 N -0.64 -20.72 5.30 -303.12 -1.61 -22.33 16 14 C 0.50 16.35 7.66 87.66 0.67 17.03 16 15 O -0.58 -25.18 13.42 -3.02 -0.04 -25.22 16 16 C -0.11 -2.24 5.71 29.85 0.17 -2.07 16 17 C -0.07 -1.56 5.23 71.98 0.38 -1.18 16 18 S -0.25 -5.08 21.72 -56.49 -1.23 -6.31 16 19 C -0.04 -0.75 6.07 71.24 0.43 -0.32 16 20 C -0.09 -1.48 5.14 -19.86 -0.10 -1.58 16 21 C -0.11 -1.78 9.70 22.27 0.22 -1.56 16 22 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 23 C -0.12 -1.44 10.05 22.27 0.22 -1.22 16 24 C -0.13 -1.67 10.05 22.27 0.22 -1.44 16 25 C -0.11 -1.80 9.70 22.27 0.22 -1.58 16 26 C -0.10 -4.07 9.90 22.13 0.22 -3.85 16 27 C -0.22 -10.84 9.74 22.48 0.22 -10.62 16 28 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 29 H 0.09 5.67 6.19 -2.91 -0.02 5.65 16 30 H 0.10 5.05 6.24 -2.91 -0.02 5.04 16 31 H 0.42 9.49 8.82 -92.70 -0.82 8.67 16 32 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.08 1.96 8.10 -2.39 -0.02 1.94 16 35 H 0.08 1.97 8.10 -2.39 -0.02 1.95 16 36 H 0.09 1.56 8.09 -2.39 -0.02 1.55 16 37 H 0.10 1.56 8.08 -2.39 -0.02 1.54 16 38 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 39 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.14 1.00 8.06 -2.91 -0.02 0.97 16 41 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.13 1.79 8.06 -2.92 -0.02 1.77 16 43 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 44 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -71.14 387.12 3.84 -67.30 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: 0.19 Total: 36.50 kcal Atomic # 6 Polarization: -49.77 SS G_CDS: 4.25 Total: -45.52 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: -1.37 Total: -67.89 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.04 Total: -25.22 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Atomic # 16 Polarization: -5.08 SS G_CDS: -1.23 Total: -6.31 kcal Total: -71.14 3.84 -67.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013687968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.513 kcal (2) G-P(sol) polarization free energy of solvation -71.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds