Wall clock time and date at job start Tue Mar 31 2020 05:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.40560 * 120.61133 * 68.58543 * 3 2 1 5 5 N 1.38071 * 119.46667 * 359.97438 * 4 3 2 6 6 N 1.32376 * 121.06569 * 179.76832 * 4 3 2 7 7 C 1.32401 * 122.53699 * 0.53168 * 6 4 3 8 8 N 1.38069 * 119.46771 * 179.75222 * 7 6 4 9 9 C 1.46852 * 110.99392 * 301.46756 * 8 7 6 10 10 C 1.53041 * 109.52143 * 185.83971 * 9 8 7 11 11 C 1.53125 * 109.27849 * 300.81993 * 10 9 8 12 12 C 1.50698 * 109.52001 * 177.55806 * 11 10 9 13 13 N 1.34780 * 119.99711 * 180.02562 * 12 11 10 14 14 O 1.21275 * 120.00145 * 0.02562 * 12 11 10 15 15 C 1.53122 * 109.15579 * 57.65746 * 11 10 9 16 16 C 1.46846 * 111.00458 * 65.67503 * 8 7 6 17 17 C 1.40530 * 121.06775 * 359.46628 * 7 6 4 18 18 C 1.43202 * 120.60829 * 180.23612 * 17 7 6 19 19 N 5.98342 * 146.56849 * 248.63729 * 2 1 3 20 20 C 1.42282 * 120.61097 * 248.60898 * 3 2 1 21 21 C 1.40447 * 121.11431 * 359.97438 * 20 3 2 22 22 H 1.08004 * 120.00686 * 313.25214 * 21 20 3 23 23 C 1.40525 * 120.00069 * 133.24716 * 21 20 3 24 24 N 1.30490 * 120.00328 * 154.80795 * 23 21 20 25 25 Si 1.86803 * 119.99726 * 334.81385 * 23 21 20 26 26 H 1.48496 * 109.46866 * 93.43445 * 25 23 21 27 27 H 1.48500 * 109.46892 * 213.43345 * 25 23 21 28 28 H 1.48501 * 109.46968 * 333.43325 * 25 23 21 29 29 H 0.96999 * 119.99682 * 0.02562 * 5 4 3 30 30 H 0.96996 * 119.99901 * 179.97438 * 5 4 3 31 31 H 1.08996 * 109.46437 * 65.82611 * 9 8 7 32 32 H 1.08995 * 109.46435 * 305.85328 * 9 8 7 33 33 H 1.08998 * 109.50291 * 60.76012 * 10 9 8 34 34 H 1.08997 * 109.50271 * 180.88027 * 10 9 8 35 35 H 1.08994 * 109.52291 * 297.75212 * 11 10 9 36 36 H 0.97002 * 119.99986 * 0.02562 * 13 12 11 37 37 H 0.97001 * 119.99830 * 179.97438 * 13 12 11 38 38 H 1.08990 * 109.50768 * 62.28796 * 15 11 10 39 39 H 1.09007 * 109.49792 * 182.40728 * 15 11 10 40 40 H 1.09004 * 109.45888 * 54.15120 * 16 8 7 41 41 H 1.09002 * 109.46191 * 294.18650 * 16 8 7 42 42 H 0.96990 * 120.00079 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2840 -0.4407 -1.1262 5 7 2.5954 -0.8785 -2.2401 6 7 4.6077 -0.4397 -1.1377 7 6 5.3285 -0.0391 -0.1018 8 7 6.7065 -0.0694 -0.1809 9 6 7.1880 -1.4292 -0.4556 10 6 8.7169 -1.4530 -0.3922 11 6 9.2811 -0.4733 -1.4249 12 6 10.7846 -0.4479 -1.3261 13 7 11.5003 0.3493 -2.1439 14 8 11.3506 -1.1446 -0.5106 15 6 8.7262 0.9262 -1.1454 16 6 7.1970 0.8810 -1.1872 17 6 4.7136 0.4220 1.0747 18 6 5.5028 0.8577 2.1873 19 7 6.1294 1.2008 3.0700 20 6 3.2923 0.4476 1.1402 21 6 2.6268 0.8989 2.2917 22 1 1.8065 1.5959 2.2032 23 6 3.0282 0.4436 3.5591 24 7 2.7949 1.1704 4.6175 25 14 3.8957 -1.2020 3.7287 26 1 5.3654 -0.9926 3.6934 27 1 3.5162 -1.8309 5.0193 28 1 3.4952 -2.0905 2.6083 29 1 1.6254 -0.8793 -2.2412 30 1 3.0817 -1.1843 -3.0216 31 1 6.8610 -1.7366 -1.4489 32 1 6.7830 -2.1152 0.2883 33 1 9.0443 -1.1591 0.6051 34 1 9.0746 -2.4590 -0.6115 35 1 8.9861 -0.7890 -2.4256 36 1 11.0476 0.9069 -2.7959 37 1 12.4681 0.3659 -2.0800 38 1 9.0537 1.2575 -0.1601 39 1 9.0905 1.6200 -1.9031 40 1 6.7985 1.8730 -0.9744 41 1 6.8698 0.5629 -2.1770 42 1 3.0723 0.8563 5.4922 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014361437.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:24 Heat of formation + Delta-G solvation = 52.611158 kcal Electronic energy + Delta-G solvation = -29392.133930 eV Core-core repulsion = 25371.681295 eV Total energy + Delta-G solvation = -4020.452635 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.47383 -39.62388 -37.95799 -35.99151 -35.52306 -34.37883 -34.25092 -33.76477 -32.64473 -31.24414 -30.80438 -28.77540 -26.86325 -25.53274 -23.12242 -22.69722 -21.90977 -20.86264 -19.70236 -19.21280 -18.25843 -17.64781 -17.31562 -16.80506 -16.53281 -16.10738 -15.35368 -15.10668 -15.02031 -14.77456 -14.38748 -14.23105 -13.87830 -13.44737 -13.30437 -13.19407 -13.04372 -12.71056 -12.45647 -12.32293 -12.13924 -12.05435 -11.94788 -11.75517 -11.54489 -11.30576 -11.14647 -10.94943 -10.77911 -10.76621 -10.57571 -10.33329 -9.92065 -9.87385 -9.79539 -9.44399 -9.14017 -8.51215 -8.30885 -7.39423 -7.26200 -5.14891 1.43651 2.13451 2.50592 2.97513 3.02674 3.12461 3.35631 3.57130 3.60510 3.72317 3.75685 3.96274 4.04453 4.26515 4.38355 4.53528 4.68550 4.75997 5.00507 5.07900 5.16274 5.26425 5.30973 5.36892 5.45815 5.52446 5.62402 5.76241 5.86097 5.91239 6.03105 6.09146 6.14283 6.39320 6.43502 6.57789 6.59360 6.73611 7.07215 7.10558 7.12454 7.50182 7.60862 7.79548 7.93468 7.97787 8.10332 8.21574 8.51564 8.73385 8.87124 9.58607 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.004124 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.752313 B = 6787.311430 C = 8133.208668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.301 3.699 3 C -0.251 4.251 4 C 0.494 3.506 5 N -0.848 5.848 6 N -0.634 5.634 7 C 0.414 3.586 8 N -0.490 5.490 9 C 0.064 3.936 10 C -0.097 4.097 11 C -0.109 4.109 12 C 0.523 3.477 13 N -0.859 5.859 14 O -0.542 6.542 15 C -0.107 4.107 16 C 0.066 3.934 17 C -0.188 4.188 18 C 0.306 3.694 19 N -0.470 5.470 20 C 0.188 3.812 21 C -0.424 4.424 22 H 0.111 0.889 23 C 0.097 3.903 24 N -0.748 5.748 25 Si 0.876 3.124 26 H -0.238 1.238 27 H -0.273 1.273 28 H -0.242 1.242 29 H 0.404 0.596 30 H 0.399 0.601 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.401 0.599 37 H 0.398 0.602 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.795 -2.652 -14.681 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.010 4.010 3 C -0.266 4.266 4 C 0.254 3.746 5 N -0.390 5.390 6 N -0.361 5.361 7 C 0.185 3.815 8 N -0.213 5.213 9 C -0.063 4.063 10 C -0.135 4.135 11 C -0.130 4.130 12 C 0.308 3.692 13 N -0.422 5.422 14 O -0.418 6.418 15 C -0.145 4.145 16 C -0.060 4.060 17 C -0.201 4.201 18 C -0.006 4.006 19 N -0.149 5.149 20 C 0.177 3.823 21 C -0.451 4.451 22 H 0.128 0.872 23 C -0.132 4.132 24 N -0.368 5.368 25 Si 0.697 3.303 26 H -0.161 1.161 27 H -0.198 1.198 28 H -0.164 1.164 29 H 0.234 0.766 30 H 0.228 0.772 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.229 0.771 37 H 0.229 0.771 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.800 -2.682 -12.712 16.895 hybrid contribution -0.277 -0.398 -0.709 0.859 sum 10.523 -3.080 -13.422 17.331 Atomic orbital electron populations 1.81093 1.12209 1.13916 1.09655 1.25208 0.92105 0.91604 0.92043 1.16194 0.84733 1.26037 0.99593 1.17642 0.87413 0.85069 0.84503 1.42136 1.08910 1.72234 1.15676 1.66876 1.05334 1.32692 1.31202 1.18891 0.87636 0.87689 0.87242 1.59886 1.05109 1.08117 1.48227 1.22064 0.94312 0.88649 1.01236 1.21446 0.93954 0.98537 0.99599 1.21425 0.90665 0.98727 1.02181 1.20750 0.90281 0.78462 0.79686 1.43923 1.10996 1.46854 1.40449 1.90745 1.72795 1.41907 1.36323 1.21613 0.95547 0.94185 1.03158 1.22011 0.93746 0.96624 0.93635 1.16570 0.91136 1.20546 0.91890 1.24692 0.91727 0.92278 0.91942 1.80996 1.10669 1.12241 1.10961 1.17079 0.88332 0.85476 0.91423 1.19483 1.15257 1.21814 0.88570 0.87171 1.26250 0.92634 0.99321 0.94987 1.69530 1.30845 1.35203 1.01172 0.86807 0.82384 0.81117 0.79969 1.16101 1.19836 1.16421 0.76616 0.77165 0.92803 0.90317 0.90135 0.90699 0.88459 0.77093 0.77125 0.90278 0.90986 0.90056 0.92876 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -10.31 18.54 41.84 0.78 -9.54 16 2 C 0.30 6.11 13.24 -22.47 -0.30 5.81 16 3 C -0.25 -4.96 5.84 -105.54 -0.62 -5.58 16 4 C 0.49 8.33 7.74 -155.40 -1.20 7.13 16 5 N -0.85 -10.90 8.96 31.23 0.28 -10.62 16 6 N -0.63 -10.57 9.61 -11.33 -0.11 -10.68 16 7 C 0.41 7.42 5.28 -155.39 -0.82 6.60 16 8 N -0.49 -7.59 3.96 -173.07 -0.69 -8.27 16 9 C 0.06 0.87 5.21 -3.83 -0.02 0.85 16 10 C -0.10 -1.20 4.68 -26.65 -0.12 -1.32 16 11 C -0.11 -1.07 2.59 -91.64 -0.24 -1.31 16 12 C 0.52 5.64 7.43 -10.98 -0.08 5.56 16 13 N -0.86 -5.63 8.78 31.22 0.27 -5.36 16 14 O -0.54 -8.32 16.81 5.56 0.09 -8.23 16 15 C -0.11 -1.05 5.26 -26.65 -0.14 -1.19 16 16 C 0.07 0.82 5.28 -3.84 -0.02 0.80 16 17 C -0.19 -3.93 4.81 -105.55 -0.51 -4.44 16 18 C 0.31 6.91 10.02 -22.49 -0.23 6.69 16 19 N -0.47 -11.22 17.66 41.82 0.74 -10.48 16 20 C 0.19 4.12 4.58 -105.95 -0.49 3.63 16 21 C -0.42 -10.21 8.34 -37.89 -0.32 -10.52 16 22 H 0.11 2.82 8.03 -52.48 -0.42 2.40 16 23 C 0.10 2.33 4.50 -17.26 -0.08 2.26 16 24 N -0.75 -18.55 13.91 55.58 0.77 -17.77 16 25 Si 0.88 19.28 25.06 -169.99 -4.26 15.02 16 26 H -0.24 -5.37 5.64 56.52 0.32 -5.05 16 27 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 28 H -0.24 -5.21 7.11 56.52 0.40 -4.81 16 29 H 0.40 4.98 7.62 -40.82 -0.31 4.67 16 30 H 0.40 4.13 8.94 -40.82 -0.37 3.76 16 31 H 0.05 0.68 7.95 -51.93 -0.41 0.27 16 32 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 33 H 0.08 1.18 8.04 -51.93 -0.42 0.77 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.40 1.47 8.32 -40.82 -0.34 1.13 16 37 H 0.40 2.28 8.93 -40.82 -0.36 1.91 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.48 7.66 -51.93 -0.40 0.09 16 40 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 41 H 0.05 0.61 8.06 -51.93 -0.42 0.19 16 42 H 0.30 6.78 8.29 -40.82 -0.34 6.44 16 LS Contribution 360.43 15.07 5.43 5.43 Total: -1.00 -29.84 360.43 -6.64 -36.47 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -4.77 Total: 9.06 kcal Atomic # 6 Polarization: 20.14 SS G_CDS: -5.17 Total: 14.97 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: 2.05 Total: -72.72 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.26 Total: 15.02 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.84 -6.64 -36.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014361437.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.084 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds