Wall clock time and date at job start Tue Mar 31 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86804 * 119.99507 * 2 1 4 4 H 1.48500 * 109.47313 * 269.99787 * 3 2 1 5 5 H 1.48506 * 109.47204 * 30.00066 * 3 2 1 6 6 H 1.48501 * 109.46855 * 149.99904 * 3 2 1 7 7 C 1.38632 * 120.00294 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99472 * 180.02562 * 7 2 1 9 9 O 1.34808 * 119.99704 * 359.97438 * 7 2 1 10 10 C 1.35778 * 116.99399 * 174.90538 * 9 7 2 11 11 C 1.38914 * 120.00109 * 5.54447 * 10 9 7 12 12 C 1.37999 * 120.00535 * 180.02562 * 11 10 9 13 13 C 1.38939 * 119.99622 * 359.97438 * 12 11 10 14 14 N 1.39918 * 120.00164 * 179.97438 * 13 12 11 15 15 C 1.34771 * 119.99639 * 144.64875 * 14 13 12 16 16 O 1.21606 * 120.00494 * 4.35034 * 15 14 13 17 17 C 1.47558 * 119.99787 * 184.36051 * 15 14 13 18 18 C 1.39770 * 120.07212 * 359.71760 * 17 15 14 19 19 C 1.37667 * 119.91819 * 179.72087 * 18 17 15 20 20 C 1.39132 * 120.07389 * 0.55408 * 19 18 17 21 21 N 1.39440 * 119.91844 * 179.69592 * 20 19 18 22 22 C 1.34781 * 119.99575 * 144.01462 * 21 20 19 23 23 N 1.34773 * 119.99835 * 184.58182 * 22 21 20 24 24 O 1.21579 * 120.00314 * 4.57681 * 22 21 20 25 25 C 1.39139 * 120.15581 * 359.72678 * 20 19 18 26 26 C 1.37652 * 120.07433 * 359.97438 * 25 20 19 27 27 C 1.38942 * 119.99320 * 0.25113 * 13 12 11 28 28 C 1.37994 * 119.99443 * 359.53683 * 27 13 12 29 29 H 0.96997 * 120.00735 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99429 * 0.02562 * 11 10 9 31 31 H 1.07999 * 119.99632 * 179.97438 * 12 11 10 32 32 H 0.96995 * 120.00024 * 324.36670 * 14 13 12 33 33 H 1.08001 * 120.04097 * 359.97438 * 18 17 15 34 34 H 1.07998 * 119.96034 * 180.28104 * 19 18 17 35 35 H 0.97002 * 120.00635 * 324.00851 * 21 20 19 36 36 H 0.97000 * 120.00452 * 359.97438 * 23 22 21 37 37 H 0.97004 * 120.00303 * 179.97438 * 23 22 21 38 38 H 1.07995 * 119.96075 * 179.97438 * 25 20 19 39 39 H 1.07996 * 120.04067 * 179.97438 * 26 25 20 40 40 H 1.08001 * 119.99974 * 179.72321 * 27 13 12 41 41 H 1.08004 * 119.99685 * 180.20447 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6179 0.0000 4 1 2.4972 2.0466 -1.4001 5 1 1.4470 2.6528 0.7001 6 1 3.5472 1.4403 0.7001 7 6 2.0090 -1.2006 -0.0005 8 1 3.0890 -1.2004 -0.0001 9 8 1.3349 -2.3680 -0.0005 10 6 2.0704 -3.5043 -0.1085 11 6 3.4578 -3.4374 -0.0965 12 6 4.2054 -4.5921 -0.2068 13 6 3.5702 -5.8217 -0.3293 14 7 4.3281 -6.9925 -0.4416 15 6 3.8907 -8.1351 0.1236 16 8 2.8012 -8.1686 0.6628 17 6 4.7339 -9.3455 0.0883 18 6 5.9839 -9.3104 -0.5359 19 6 6.7704 -10.4399 -0.5619 20 6 6.3173 -11.6186 0.0222 21 7 7.1140 -12.7625 -0.0116 22 6 7.1223 -13.6090 1.0372 23 7 7.9602 -14.6646 1.0445 24 8 6.3741 -13.4204 1.9767 25 6 5.0710 -11.6587 0.6394 26 6 4.2820 -10.5313 0.6744 27 6 2.1825 -5.8880 -0.3460 28 6 1.4353 -4.7336 -0.2313 29 1 -0.4851 0.8400 0.0004 30 1 3.9515 -2.4816 -0.0008 31 1 5.2841 -4.5399 -0.1978 32 1 5.1662 -6.9828 -0.9297 33 1 6.3341 -8.3970 -0.9938 34 1 7.7384 -10.4123 -1.0402 35 1 7.6621 -12.9491 -0.7898 36 1 8.5570 -14.8154 0.2948 37 1 7.9666 -15.2737 1.7994 38 1 4.7222 -12.5754 1.0914 39 1 3.3145 -10.5631 1.1532 40 1 1.6887 -6.8434 -0.4457 41 1 0.3565 -4.7855 -0.2410 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014490750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:36 Heat of formation + Delta-G solvation = -24.609086 kcal Electronic energy + Delta-G solvation = -27026.414311 eV Core-core repulsion = 22872.601741 eV Total energy + Delta-G solvation = -4153.812569 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.14905 -40.25772 -38.95783 -38.22762 -36.43708 -35.17172 -34.27279 -33.94319 -32.18259 -31.26626 -30.19128 -30.12810 -27.69106 -25.38260 -24.31383 -23.20303 -22.27961 -21.81138 -21.30361 -20.17337 -18.97426 -18.61016 -18.22285 -17.80947 -17.16043 -16.52892 -16.33358 -15.79499 -15.39939 -15.08202 -14.95328 -14.54432 -14.47436 -14.32433 -14.01331 -13.74509 -13.58264 -13.49910 -12.97968 -12.85585 -12.69732 -12.44823 -11.82409 -11.66660 -11.54458 -11.45608 -11.03637 -10.91302 -10.71833 -10.58270 -10.44991 -10.31281 -9.75748 -9.54472 -9.28636 -9.23182 -8.70881 -8.53242 -8.17647 -6.90689 -6.42363 -4.00424 0.55289 1.10216 2.14401 2.19649 2.25141 2.52094 2.95407 3.14501 3.15033 3.19849 3.31036 3.71000 3.80652 3.98629 4.47753 4.54985 4.60807 4.74323 5.01323 5.07879 5.12240 5.19745 5.35310 5.57756 5.67451 5.72936 5.79016 5.83709 6.06121 6.12155 6.17603 6.20801 6.24953 6.28288 6.34365 6.62630 6.84128 6.88060 7.02081 7.18808 7.22526 7.24717 7.43552 7.73177 7.81100 7.94769 8.02024 8.38481 9.02853 9.73635 10.75567 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.038507 B = 0.001682 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.965475 B =16642.862091 C =17063.747152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.148 3.852 11 C -0.220 4.220 12 C -0.089 4.089 13 C 0.034 3.966 14 N -0.655 5.655 15 C 0.550 3.450 16 O -0.523 6.523 17 C -0.143 4.143 18 C -0.068 4.068 19 C -0.153 4.153 20 C 0.181 3.819 21 N -0.684 5.684 22 C 0.704 3.296 23 N -0.861 5.861 24 O -0.570 6.570 25 C -0.127 4.127 26 C -0.039 4.039 27 C -0.066 4.066 28 C -0.179 4.179 29 H 0.270 0.730 30 H 0.131 0.869 31 H 0.110 0.890 32 H 0.400 0.600 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.409 0.591 36 H 0.399 0.601 37 H 0.419 0.581 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.129 0.871 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.857 -26.406 -4.403 33.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.080 6.080 10 C 0.094 3.906 11 C -0.240 4.240 12 C -0.109 4.109 13 C -0.059 4.059 14 N -0.300 5.300 15 C 0.339 3.661 16 O -0.400 6.400 17 C -0.147 4.147 18 C -0.087 4.087 19 C -0.174 4.174 20 C 0.085 3.915 21 N -0.333 5.333 22 C 0.403 3.597 23 N -0.430 5.430 24 O -0.446 6.446 25 C -0.147 4.147 26 C -0.059 4.059 27 C -0.086 4.086 28 C -0.199 4.199 29 H 0.080 0.920 30 H 0.149 0.851 31 H 0.128 0.872 32 H 0.235 0.765 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.244 0.756 36 H 0.227 0.773 37 H 0.252 0.748 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.147 0.853 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 18.004 -25.983 -3.224 31.775 hybrid contribution 1.763 0.390 -0.684 1.931 sum 19.767 -25.593 -3.908 32.573 Atomic orbital electron populations 1.70046 1.05942 1.27646 1.46016 1.25287 0.95837 0.98816 0.96605 0.85714 0.78908 0.80142 0.78656 1.19909 1.20284 1.19231 1.21316 0.91782 0.80879 1.52824 0.89068 1.83991 1.34251 1.11395 1.78340 1.19430 0.90243 0.88124 0.92825 1.20966 0.93674 0.98424 1.10942 1.20482 0.98412 0.91114 1.00875 1.17240 0.90739 0.84650 1.13239 1.43087 1.24815 1.08200 1.53867 1.18214 0.86343 0.83015 0.78558 1.90790 1.21025 1.84147 1.44080 1.19986 0.95951 0.94766 1.03988 1.21078 0.92831 0.97982 0.96808 1.20751 1.00620 0.91117 1.04910 1.17645 0.89969 0.85311 0.98576 1.42449 1.47843 1.23419 1.19555 1.15955 0.81256 0.79971 0.82543 1.42967 1.43517 1.29813 1.26654 1.91030 1.42967 1.74651 1.35950 1.21268 0.92133 1.00165 1.01158 1.21217 0.99697 0.90374 0.94602 1.20754 0.91842 0.97931 0.98040 1.20158 0.99765 0.89816 1.10129 0.92029 0.85101 0.87157 0.76451 0.85101 0.85110 0.75566 0.77311 0.74767 0.83670 0.84083 0.85283 0.86088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.43 13.67 55.48 0.76 -24.68 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.53 29.55 -169.99 -5.02 15.50 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.39 -10.97 9.48 30.88 0.29 -10.68 16 8 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 9 O -0.18 -5.10 9.76 0.02 0.00 -5.10 16 10 C 0.15 3.64 6.65 -39.08 -0.26 3.38 16 11 C -0.22 -4.77 9.16 -39.42 -0.36 -5.13 16 12 C -0.09 -1.61 9.96 -39.41 -0.39 -2.01 16 13 C 0.03 0.61 6.29 -83.65 -0.53 0.08 16 14 N -0.66 -9.33 5.28 -10.76 -0.06 -9.38 16 15 C 0.55 8.39 7.60 -12.46 -0.09 8.30 16 16 O -0.52 -9.98 13.81 5.27 0.07 -9.91 16 17 C -0.14 -1.70 5.88 -104.95 -0.62 -2.32 16 18 C -0.07 -0.58 9.53 -39.22 -0.37 -0.95 16 19 C -0.15 -1.09 9.95 -39.46 -0.39 -1.48 16 20 C 0.18 1.52 6.28 -83.73 -0.53 1.00 16 21 N -0.68 -3.77 5.32 -14.22 -0.08 -3.85 16 22 C 0.70 5.14 8.67 -86.92 -0.75 4.39 16 23 N -0.86 -2.24 8.88 27.63 0.25 -2.00 16 24 O -0.57 -6.96 14.65 5.30 0.08 -6.88 16 25 C -0.13 -1.36 8.66 -39.46 -0.34 -1.70 16 26 C -0.04 -0.47 9.58 -39.22 -0.38 -0.84 16 27 C -0.07 -1.33 8.68 -39.41 -0.34 -1.67 16 28 C -0.18 -4.01 9.98 -39.42 -0.39 -4.41 16 29 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.13 2.79 5.63 -52.49 -0.30 2.50 16 31 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.40 4.11 6.85 -40.82 -0.28 3.83 16 33 H 0.13 0.79 6.40 -52.49 -0.34 0.46 16 34 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 35 H 0.41 0.66 8.84 -40.82 -0.36 0.30 16 36 H 0.40 -0.32 8.85 -40.82 -0.36 -0.68 16 37 H 0.42 0.84 8.93 -40.82 -0.36 0.48 16 38 H 0.15 1.66 6.27 -52.49 -0.33 1.33 16 39 H 0.14 1.74 7.64 -52.49 -0.40 1.34 16 40 H 0.13 2.56 6.27 -52.49 -0.33 2.23 16 41 H 0.12 2.64 8.06 -52.48 -0.42 2.21 16 LS Contribution 357.43 15.07 5.39 5.39 Total: -1.00 -37.90 357.43 -7.90 -45.80 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -3.73 Total: 8.17 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -5.55 Total: -13.07 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.87 Total: -39.91 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.15 Total: -21.88 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.90 -7.90 -45.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014490750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.195 kcal (2) G-P(sol) polarization free energy of solvation -37.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds