Wall clock time and date at job start Tue Mar 31 2020 05:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86806 * 119.99873 * 2 1 4 4 H 1.48503 * 109.47213 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.46774 * 240.00050 * 3 2 1 6 6 H 1.48497 * 109.47140 * 120.00102 * 3 2 1 7 7 C 1.38632 * 120.00287 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00372 * 180.02562 * 7 2 1 9 9 O 1.34815 * 119.99501 * 0.02562 * 7 2 1 10 10 C 1.35784 * 116.99711 * 174.96416 * 9 7 2 11 11 C 1.38904 * 119.99721 * 185.06225 * 10 9 7 12 12 C 1.38006 * 119.99912 * 179.76442 * 11 10 9 13 13 C 1.38913 * 119.99834 * 0.53281 * 12 11 10 14 14 N 1.39998 * 120.00301 * 179.69534 * 13 12 11 15 15 C 1.34776 * 119.99460 * 35.15069 * 14 13 12 16 16 O 1.21287 * 120.00026 * 355.48864 * 15 14 13 17 17 C 1.50705 * 119.99850 * 175.48773 * 15 14 13 18 18 H 1.09004 * 110.96516 * 335.69883 * 17 15 14 19 19 C 1.54139 * 111.09782 * 211.56849 * 17 15 14 20 20 C 1.50935 * 110.47137 * 213.77570 * 19 17 15 21 21 C 1.39602 * 126.81114 * 200.18157 * 20 19 17 22 22 C 1.37696 * 121.05295 * 180.61365 * 21 20 19 23 23 C 1.38315 * 120.54776 * 359.97438 * 22 21 20 24 24 C 1.38032 * 119.29185 * 359.87551 * 23 22 21 25 25 C 1.38814 * 120.15803 * 0.02565 * 24 23 22 26 26 S 1.77442 * 130.56735 * 180.23854 * 25 24 23 27 27 C 1.38920 * 119.99920 * 359.72354 * 13 12 11 28 28 C 1.38003 * 119.99529 * 359.97438 * 27 13 12 29 29 H 0.97001 * 119.99867 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00083 * 0.02562 * 11 10 9 31 31 H 1.08004 * 120.00004 * 180.25224 * 12 11 10 32 32 H 0.96998 * 120.00162 * 215.14169 * 14 13 12 33 33 H 1.08998 * 109.27942 * 334.02526 * 19 17 15 34 34 H 1.09002 * 109.27598 * 93.46827 * 19 17 15 35 35 H 1.07997 * 119.46765 * 0.61355 * 21 20 19 36 36 H 1.08000 * 119.72838 * 179.97438 * 22 21 20 37 37 H 1.08002 * 120.35783 * 179.89737 * 23 22 21 38 38 H 1.08004 * 119.92022 * 180.02562 * 24 23 22 39 39 H 1.07996 * 120.00523 * 179.97438 * 27 13 12 40 40 H 1.08003 * 120.00045 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 1.2847 2.7465 -0.0006 5 1 3.1034 1.6964 -1.2126 6 1 3.1035 1.6965 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3348 -2.3681 0.0005 10 6 2.0704 -3.5045 -0.1051 11 6 1.4354 -4.7348 -0.2174 12 6 2.1829 -5.8894 -0.3297 13 6 3.5704 -5.8223 -0.3193 14 7 4.3288 -6.9942 -0.4268 15 6 3.8935 -8.0100 -1.1982 16 8 2.8073 -7.9426 -1.7336 17 6 4.7565 -9.2297 -1.3954 18 1 5.8088 -8.9924 -1.2386 19 6 4.5292 -9.8510 -2.7876 20 6 4.6682 -11.3526 -2.7246 21 6 4.9208 -12.2148 -3.7930 22 6 5.0128 -13.5753 -3.6014 23 6 4.8566 -14.1197 -2.3396 24 6 4.6093 -13.2838 -1.2693 25 6 4.5186 -11.9121 -1.4622 26 16 4.2206 -10.6011 -0.3041 27 6 4.2054 -4.5924 -0.2016 28 6 3.4578 -3.4372 -0.0956 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3566 -4.7874 -0.2211 31 1 1.6892 -6.8457 -0.4211 32 1 5.1675 -7.0749 0.0538 33 1 3.5282 -9.5967 -3.1361 34 1 5.2645 -9.4498 -3.4851 35 1 5.0460 -11.8083 -4.7857 36 1 5.2085 -14.2227 -4.4434 37 1 4.9278 -15.1873 -2.1930 38 1 4.4861 -13.6980 -0.2795 39 1 5.2841 -4.5401 -0.1931 40 1 3.9514 -2.4809 -0.0046 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014490800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:46 Heat of formation + Delta-G solvation = -4.721179 kcal Electronic energy + Delta-G solvation = -24913.952495 eV Core-core repulsion = 21171.462450 eV Total energy + Delta-G solvation = -3742.490045 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.087 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.46244 -39.64208 -38.83289 -36.77647 -34.76405 -34.19347 -32.20577 -31.27560 -30.37718 -30.31914 -27.95369 -25.39644 -24.80916 -23.43781 -22.36753 -21.94397 -21.27021 -20.34914 -18.56716 -18.22954 -17.49569 -17.34295 -16.53166 -16.08174 -15.82350 -15.53736 -15.05082 -14.81816 -14.47153 -14.07090 -13.83746 -13.77101 -13.72030 -13.44364 -13.32686 -13.19256 -13.08948 -12.62035 -12.41129 -11.97344 -11.80588 -11.68404 -11.46546 -11.19373 -10.91117 -10.58558 -10.42775 -10.32107 -10.22974 -9.90410 -9.74308 -9.36216 -9.18467 -8.70823 -8.32939 -7.79593 -7.08368 -6.80205 -4.08667 0.67900 0.86331 0.91697 1.73656 2.02465 2.10855 2.73200 3.00918 3.21767 3.24438 3.26986 3.43360 3.94011 4.09185 4.16439 4.39617 4.45914 4.49424 4.57554 4.70569 4.92838 5.04492 5.05727 5.14868 5.17296 5.27946 5.43782 5.47166 5.62387 5.67059 5.84139 5.91738 5.99201 6.06048 6.08320 6.14413 6.45150 6.68826 6.70464 6.83953 7.03043 7.17198 7.44347 7.54664 7.61411 8.10635 8.36489 8.88227 9.56711 10.63704 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.038596 B = 0.001859 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.294638 B =15057.667208 C =15097.695307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.010 3.990 3 Si 1.096 2.904 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.472 4.472 8 H 0.084 0.916 9 O -0.199 6.199 10 C 0.152 3.848 11 C -0.182 4.182 12 C -0.064 4.064 13 C 0.031 3.969 14 N -0.649 5.649 15 C 0.527 3.473 16 O -0.506 6.506 17 C -0.085 4.085 18 H 0.124 0.876 19 C -0.079 4.079 20 C -0.098 4.098 21 C -0.093 4.093 22 C -0.118 4.118 23 C -0.105 4.105 24 C -0.086 4.086 25 C -0.086 4.086 26 S -0.093 6.093 27 C -0.085 4.085 28 C -0.216 4.216 29 H 0.283 0.717 30 H 0.120 0.880 31 H 0.131 0.869 32 H 0.404 0.596 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.458 -24.656 -4.266 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.196 4.196 3 Si 0.920 3.080 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.548 4.548 8 H 0.102 0.898 9 O -0.103 6.103 10 C 0.098 3.902 11 C -0.202 4.202 12 C -0.084 4.084 13 C -0.061 4.061 14 N -0.294 5.294 15 C 0.310 3.690 16 O -0.381 6.381 17 C -0.217 4.217 18 H 0.142 0.858 19 C -0.117 4.117 20 C -0.103 4.103 21 C -0.113 4.113 22 C -0.139 4.139 23 C -0.125 4.125 24 C -0.110 4.110 25 C -0.198 4.198 26 S 0.150 5.850 27 C -0.106 4.106 28 C -0.236 4.236 29 H 0.093 0.907 30 H 0.138 0.862 31 H 0.148 0.852 32 H 0.239 0.761 33 H 0.133 0.867 34 H 0.114 0.886 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.131 0.869 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.757 -22.746 -3.374 26.297 hybrid contribution 1.364 -1.879 -0.989 2.524 sum 14.120 -24.626 -4.363 28.720 Atomic orbital electron populations 1.70576 1.06567 1.31738 1.42123 1.26557 0.96848 1.01165 0.95010 0.83107 0.74500 0.73340 0.77075 1.19751 1.20727 1.20709 1.22204 0.93089 0.82201 1.57315 0.89827 1.83680 1.35490 1.12206 1.78919 1.19279 0.90270 0.87491 0.93164 1.20135 0.99693 0.89866 1.10460 1.20736 0.91813 0.98171 0.97717 1.17227 0.90659 0.84452 1.13774 1.43094 1.25003 1.14653 1.46632 1.19481 0.86968 0.83163 0.79352 1.90730 1.20455 1.79101 1.47773 1.24050 1.03588 0.95491 0.98525 0.85823 1.20872 1.06321 0.89939 0.94571 1.20815 1.01478 0.94684 0.93341 1.20825 0.99481 0.93012 0.98001 1.20990 1.00580 0.94711 0.97575 1.21113 0.99350 0.99677 0.92345 1.20426 1.00464 0.90255 0.99807 1.22140 1.04760 0.97013 0.95923 1.86355 1.82686 0.96975 1.19022 1.20493 0.98542 0.90600 1.00929 1.20987 0.93598 0.98483 1.10560 0.90713 0.86178 0.85165 0.76082 0.86696 0.88566 0.85690 0.85439 0.85025 0.85407 0.86937 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.14 13.70 55.48 0.76 -25.38 16 2 C 0.01 0.27 5.49 -17.52 -0.10 0.18 16 3 Si 1.10 23.39 29.92 -169.99 -5.09 18.31 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 7 C -0.47 -13.14 9.48 30.88 0.29 -12.85 16 8 H 0.08 2.16 5.20 -52.49 -0.27 1.89 16 9 O -0.20 -5.58 9.16 -0.01 0.00 -5.58 16 10 C 0.15 3.66 6.65 -39.09 -0.26 3.40 16 11 C -0.18 -3.95 9.98 -39.42 -0.39 -4.34 16 12 C -0.06 -1.26 8.69 -39.42 -0.34 -1.60 16 13 C 0.03 0.54 6.30 -83.62 -0.53 0.01 16 14 N -0.65 -8.59 5.34 -9.82 -0.05 -8.64 16 15 C 0.53 7.18 6.89 -10.98 -0.08 7.11 16 16 O -0.51 -8.81 13.25 5.55 0.07 -8.73 16 17 C -0.08 -0.86 3.82 -27.29 -0.10 -0.96 16 18 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 19 C -0.08 -0.77 5.83 -27.17 -0.16 -0.93 16 20 C -0.10 -0.95 5.98 -103.76 -0.62 -1.57 16 21 C -0.09 -0.75 9.97 -39.27 -0.39 -1.14 16 22 C -0.12 -0.81 9.99 -39.75 -0.40 -1.21 16 23 C -0.11 -0.73 10.08 -39.63 -0.40 -1.12 16 24 C -0.09 -0.73 10.05 -39.44 -0.40 -1.13 16 25 C -0.09 -0.89 6.48 -39.13 -0.25 -1.14 16 26 S -0.09 -1.04 22.54 -107.50 -2.42 -3.47 16 27 C -0.09 -1.50 9.96 -39.42 -0.39 -1.89 16 28 C -0.22 -4.61 9.16 -39.42 -0.36 -4.97 16 29 H 0.28 8.62 7.97 -40.82 -0.33 8.30 16 30 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 31 H 0.13 2.50 6.23 -52.48 -0.33 2.18 16 32 H 0.40 3.86 8.82 -40.82 -0.36 3.50 16 33 H 0.12 1.35 6.93 -51.93 -0.36 0.99 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 37 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.13 2.83 5.63 -52.48 -0.30 2.53 16 LS Contribution 355.46 15.07 5.36 5.36 Total: -1.00 -33.32 355.46 -10.37 -43.68 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -4.12 Total: 8.63 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -4.88 Total: -24.17 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.71 Total: -34.02 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.07 Total: -14.32 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.09 Total: 18.31 kcal Atomic # 16 Polarization: -1.04 SS G_CDS: -2.42 Total: -3.47 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.32 -10.37 -43.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014490800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.964 kcal (2) G-P(sol) polarization free energy of solvation -33.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds