Wall clock time and date at job start Tue Mar 31 2020 05:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86806 * 119.99499 * 2 1 4 4 H 1.48499 * 109.46945 * 90.00343 * 3 2 1 5 5 H 1.48493 * 109.46708 * 210.00030 * 3 2 1 6 6 H 1.48500 * 109.47031 * 330.00430 * 3 2 1 7 7 C 1.38632 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99750 * 0.02562 * 7 2 1 9 9 O 1.34811 * 120.00004 * 179.97438 * 7 2 1 10 10 C 1.35774 * 117.00056 * 174.96248 * 9 7 2 11 11 C 1.38911 * 119.99906 * 185.07107 * 10 9 7 12 12 C 1.38002 * 119.99982 * 179.72758 * 11 10 9 13 13 C 1.38915 * 119.99882 * 0.54265 * 12 11 10 14 14 N 1.39996 * 120.00100 * 179.74978 * 13 12 11 15 15 C 1.34774 * 119.99877 * 35.10526 * 14 13 12 16 16 O 1.21290 * 119.99904 * 355.48665 * 15 14 13 17 17 C 1.50703 * 119.99609 * 175.49572 * 15 14 13 18 18 H 1.08988 * 110.96940 * 25.86485 * 17 15 14 19 19 C 1.54147 * 111.09590 * 150.00108 * 17 15 14 20 20 C 1.50875 * 110.49366 * 146.27422 * 19 17 15 21 21 C 1.39605 * 126.82843 * 159.35790 * 20 19 17 22 22 C 1.37691 * 121.05720 * 179.66617 * 21 20 19 23 23 C 1.38327 * 120.54254 * 359.97438 * 22 21 20 24 24 C 1.38020 * 119.29133 * 0.18906 * 23 22 21 25 25 C 1.38822 * 120.16268 * 359.97438 * 24 23 22 26 26 S 1.77432 * 130.57198 * 179.32613 * 25 24 23 27 27 C 1.38915 * 119.99681 * 359.73146 * 13 12 11 28 28 C 1.38003 * 120.00116 * 359.97438 * 27 13 12 29 29 H 0.96993 * 120.00363 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.99907 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.99489 * 180.25147 * 12 11 10 32 32 H 0.96997 * 119.99695 * 215.10345 * 14 13 12 33 33 H 1.08999 * 109.27832 * 266.54664 * 19 17 15 34 34 H 1.09001 * 109.28479 * 25.99178 * 19 17 15 35 35 H 1.08007 * 119.46846 * 359.64857 * 21 20 19 36 36 H 1.08002 * 119.73336 * 179.97438 * 22 21 20 37 37 H 1.08004 * 120.35350 * 180.16422 * 23 22 21 38 38 H 1.08005 * 119.92104 * 179.97438 * 24 23 22 39 39 H 1.08007 * 120.00292 * 179.97438 * 27 13 12 40 40 H 1.07998 * 119.99889 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6179 0.0000 4 1 2.4972 2.0465 1.4001 5 1 3.5472 1.4403 -0.7000 6 1 1.4470 2.6527 -0.6999 7 6 2.0090 -1.2006 -0.0005 8 1 1.4690 -2.1358 -0.0014 9 8 3.3571 -1.2005 -0.0011 10 6 3.9736 -2.4056 0.1047 11 6 5.3567 -2.4707 0.2166 12 6 5.9829 -3.6953 0.3297 13 6 5.2310 -4.8633 0.3203 14 7 5.8667 -6.1059 0.4298 15 6 6.9641 -6.2357 1.2013 16 8 7.4489 -5.2605 1.7351 17 6 7.5888 -7.5926 1.4004 18 1 7.3664 -8.2514 0.5611 19 6 9.1091 -7.4756 1.6264 20 6 9.5857 -8.5458 2.5772 21 6 10.8914 -9.0194 2.7176 22 6 11.1963 -10.0012 3.6336 23 6 10.2102 -10.5419 4.4389 24 6 8.9123 -10.0897 4.3131 25 6 8.6043 -9.1022 3.3872 26 16 7.0535 -8.3388 2.9869 27 6 3.8484 -4.7984 0.2026 28 6 3.2217 -3.5735 0.0956 29 1 -0.4850 0.8399 0.0004 30 1 5.9416 -1.5628 0.2191 31 1 7.0579 -3.7456 0.4208 32 1 5.5172 -6.8733 -0.0497 33 1 9.6244 -7.5865 0.6723 34 1 9.3365 -6.4952 2.0449 35 1 11.6749 -8.6092 2.0976 36 1 12.2138 -10.3520 3.7240 37 1 10.4532 -11.3100 5.1582 38 1 8.1342 -10.5051 4.9365 39 1 3.2638 -5.7065 0.1948 40 1 2.1468 -3.5230 0.0045 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014490802.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:50 Heat of formation + Delta-G solvation = 3.448000 kcal Electronic energy + Delta-G solvation = -24928.342511 eV Core-core repulsion = 21186.206708 eV Total energy + Delta-G solvation = -3742.135803 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.087 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.48412 -39.64630 -38.88610 -36.80726 -34.76667 -34.18633 -32.36234 -31.27037 -30.39490 -30.35479 -28.15877 -25.63576 -24.85886 -23.42643 -22.44092 -21.95622 -21.20419 -20.29262 -18.40421 -18.00530 -17.56394 -17.27566 -16.80467 -16.12584 -15.83486 -15.54119 -14.92772 -14.78337 -14.55690 -13.99560 -13.91878 -13.86017 -13.62466 -13.50066 -13.29052 -13.07569 -12.84796 -12.41124 -12.39544 -12.29113 -11.90275 -11.86556 -11.61590 -11.45951 -10.94956 -10.85529 -10.58051 -10.23747 -10.19202 -9.90572 -9.74708 -9.35110 -9.18468 -8.80572 -8.34556 -7.78067 -7.13394 -6.44229 -4.10188 0.68277 0.86980 0.92414 1.74636 1.98158 2.07494 2.82793 2.91183 3.21599 3.24779 3.26007 3.40066 3.93631 4.15933 4.22353 4.37592 4.44507 4.50238 4.56676 4.68566 4.84715 4.93222 5.04154 5.08100 5.14481 5.27893 5.44433 5.46865 5.61879 5.65894 5.84627 5.91997 5.97266 6.05043 6.06388 6.12186 6.45590 6.60258 6.69587 6.83854 6.99621 7.18033 7.47443 7.52586 7.74725 7.98076 8.10213 8.90831 9.52516 10.63114 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.032978 B = 0.001953 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.844689 B =14335.556721 C =14639.447078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.259 1.259 6 H -0.282 1.282 7 C -0.390 4.390 8 H 0.107 0.893 9 O -0.214 6.214 10 C 0.154 3.846 11 C -0.179 4.179 12 C -0.068 4.068 13 C 0.038 3.962 14 N -0.650 5.650 15 C 0.528 3.472 16 O -0.506 6.506 17 C -0.086 4.086 18 H 0.124 0.876 19 C -0.080 4.080 20 C -0.099 4.099 21 C -0.094 4.094 22 C -0.119 4.119 23 C -0.105 4.105 24 C -0.086 4.086 25 C -0.086 4.086 26 S -0.088 6.088 27 C -0.087 4.087 28 C -0.207 4.207 29 H 0.280 0.720 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.405 0.595 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.114 0.886 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.701 -22.022 3.358 29.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.183 1.183 6 H -0.208 1.208 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.119 6.119 10 C 0.102 3.898 11 C -0.199 4.199 12 C -0.088 4.088 13 C -0.054 4.054 14 N -0.295 5.295 15 C 0.311 3.689 16 O -0.380 6.380 17 C -0.218 4.218 18 H 0.142 0.858 19 C -0.117 4.117 20 C -0.104 4.104 21 C -0.113 4.113 22 C -0.139 4.139 23 C -0.125 4.125 24 C -0.109 4.109 25 C -0.199 4.199 26 S 0.155 5.845 27 C -0.107 4.107 28 C -0.226 4.226 29 H 0.090 0.910 30 H 0.140 0.860 31 H 0.149 0.851 32 H 0.240 0.760 33 H 0.114 0.886 34 H 0.133 0.867 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.132 0.868 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 18.686 -20.865 4.275 28.333 hybrid contribution 1.003 0.056 -0.762 1.261 sum 19.689 -20.809 3.513 28.862 Atomic orbital electron populations 1.69650 1.05559 1.28563 1.47778 1.24475 0.95044 0.98890 0.95590 0.86177 0.80330 0.81357 0.79043 1.19827 1.18308 1.20770 1.20761 0.76867 0.96653 1.52256 0.87574 1.83583 1.22631 1.25636 1.80054 1.19169 0.91703 0.85558 0.93392 1.20142 0.91827 0.97704 1.10194 1.20716 0.99659 0.90288 0.98124 1.17276 0.91182 0.84037 1.12884 1.43107 1.28056 1.11432 1.46883 1.19473 0.81330 0.89025 0.79052 1.90726 1.61026 1.38649 1.47645 1.24024 0.98998 0.98632 1.00121 0.85801 1.20870 0.90875 1.00021 0.99964 1.20798 0.94326 0.97169 0.98128 1.20816 0.94706 0.96939 0.98865 1.20989 0.99698 0.97089 0.96133 1.21115 0.92230 0.99866 0.99250 1.20431 0.97263 0.95475 0.97772 1.22163 0.96318 1.00336 1.01079 1.86441 1.12815 1.61418 1.23847 1.20545 0.91709 0.97626 1.00855 1.21099 1.01191 0.91151 1.09188 0.91005 0.86036 0.85141 0.75999 0.88604 0.86693 0.85721 0.85459 0.85030 0.85394 0.86758 0.84378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.13 13.96 55.48 0.77 -24.35 16 2 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 3 Si 0.91 21.61 28.62 -169.99 -4.86 16.75 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.39 -10.86 9.94 30.88 0.31 -10.55 16 8 H 0.11 2.99 5.43 -52.49 -0.28 2.71 16 9 O -0.21 -5.61 8.58 0.03 0.00 -5.61 16 10 C 0.15 3.54 6.65 -39.09 -0.26 3.28 16 11 C -0.18 -3.63 9.98 -39.42 -0.39 -4.03 16 12 C -0.07 -1.24 8.69 -39.42 -0.34 -1.59 16 13 C 0.04 0.64 6.30 -83.63 -0.53 0.11 16 14 N -0.65 -8.27 5.34 -9.82 -0.05 -8.33 16 15 C 0.53 6.94 6.91 -10.99 -0.08 6.86 16 16 O -0.51 -8.49 13.21 5.55 0.07 -8.42 16 17 C -0.09 -0.84 3.83 -27.28 -0.10 -0.95 16 18 H 0.12 0.84 8.14 -51.94 -0.42 0.42 16 19 C -0.08 -0.74 5.82 -27.20 -0.16 -0.89 16 20 C -0.10 -0.94 5.98 -103.79 -0.62 -1.56 16 21 C -0.09 -0.72 9.97 -39.27 -0.39 -1.11 16 22 C -0.12 -0.80 10.00 -39.75 -0.40 -1.19 16 23 C -0.10 -0.72 10.08 -39.63 -0.40 -1.12 16 24 C -0.09 -0.74 10.05 -39.45 -0.40 -1.13 16 25 C -0.09 -0.89 6.48 -39.13 -0.25 -1.14 16 26 S -0.09 -1.00 22.54 -107.50 -2.42 -3.42 16 27 C -0.09 -1.51 9.96 -39.42 -0.39 -1.90 16 28 C -0.21 -4.33 9.16 -39.42 -0.36 -4.69 16 29 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.12 2.31 8.06 -52.48 -0.42 1.89 16 31 H 0.13 2.29 6.23 -52.49 -0.33 1.97 16 32 H 0.41 3.67 8.82 -40.82 -0.36 3.31 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.12 1.28 6.91 -51.93 -0.36 0.92 16 35 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 36 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 37 H 0.13 0.57 8.06 -52.48 -0.42 0.14 16 38 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 40 H 0.14 3.01 5.63 -52.49 -0.30 2.71 16 LS Contribution 354.84 15.07 5.35 5.35 Total: -1.00 -32.25 354.84 -10.15 -42.40 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -4.14 Total: 5.57 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -4.86 Total: -19.93 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.72 Total: -32.68 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.07 Total: -14.03 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.86 Total: 16.75 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -2.42 Total: -3.42 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.25 -10.15 -42.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014490802.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.846 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds