Wall clock time and date at job start Tue Mar 31 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.30490 * 120.00120 * 2 1 4 4 S 1.77214 * 126.69014 * 0.31142 * 3 2 1 5 5 C 1.77401 * 94.74712 * 180.08895 * 4 3 2 6 6 C 1.36232 * 127.70905 * 179.97438 * 5 4 3 7 7 C 1.46161 * 120.00050 * 186.25477 * 6 5 4 8 8 C 1.37787 * 126.82651 * 40.64810 * 7 6 5 9 9 N 1.35883 * 109.48006 * 180.02562 * 8 7 6 10 10 C 1.36957 * 124.77946 * 179.97438 * 9 8 7 11 11 H 1.08007 * 120.00014 * 203.65624 * 10 9 8 12 12 C 1.38905 * 120.00010 * 23.65620 * 10 9 8 13 13 N 1.31385 * 119.99896 * 12.61574 * 12 10 9 14 14 Si 1.86805 * 119.99982 * 192.61601 * 12 10 9 15 15 H 1.48496 * 109.47097 * 90.00308 * 14 12 10 16 16 H 1.48505 * 109.46675 * 209.99969 * 14 12 10 17 17 H 1.48503 * 109.46965 * 329.99740 * 14 12 10 18 18 C 1.38424 * 110.44303 * 359.97438 * 9 8 7 19 19 C 1.39017 * 132.95202 * 180.02562 * 18 9 8 20 20 C 1.37932 * 119.95381 * 179.97438 * 19 18 9 21 21 C 1.38636 * 120.60493 * 359.97438 * 20 19 18 22 22 C 1.37947 * 120.25323 * 0.29309 * 21 20 19 23 23 C 1.39119 * 119.69049 * 359.45550 * 22 21 20 24 24 C 1.46243 * 104.58531 * 359.65928 * 5 4 3 25 25 O 1.21772 * 122.30156 * 180.24328 * 24 5 4 26 26 N 1.32251 * 115.40614 * 0.26069 * 24 5 4 27 27 C 1.46500 * 120.68092 * 180.02562 * 26 24 5 28 28 H 1.09003 * 109.47019 * 300.00579 * 1 2 3 29 29 H 1.09005 * 109.47027 * 60.00244 * 1 2 3 30 30 H 1.08996 * 109.47568 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.00371 * 6.25029 * 6 5 4 32 32 H 1.08008 * 125.25865 * 0.02562 * 8 7 6 33 33 H 0.97002 * 119.99954 * 180.02562 * 13 12 10 34 34 H 1.08001 * 120.02418 * 359.97438 * 19 18 9 35 35 H 1.08003 * 119.69614 * 179.97438 * 20 19 18 36 36 H 1.07992 * 119.87667 * 180.02562 * 21 20 19 37 37 H 1.08002 * 120.14935 * 179.70395 * 22 21 20 38 38 H 1.08991 * 109.47040 * 359.97438 * 27 26 24 39 39 H 1.09000 * 109.46560 * 119.97571 * 27 26 24 40 40 H 1.08997 * 109.47333 * 239.97507 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1175 1.1301 0.0000 4 16 1.4163 2.7576 0.0077 5 6 2.9818 3.5919 -0.0001 6 6 3.2103 4.9350 0.0008 7 6 4.5724 5.4447 -0.1443 8 6 5.5489 4.9630 -0.9886 9 7 6.6819 5.6977 -0.8369 10 6 7.8473 5.4875 -1.5249 11 1 8.7865 5.8251 -1.1122 12 6 7.8214 4.8400 -2.7536 13 7 6.6779 4.6505 -3.3722 14 14 9.4123 4.2388 -3.5263 15 1 9.6853 2.8491 -3.0796 16 1 9.2857 4.2673 -5.0057 17 1 10.5304 5.1220 -3.1080 18 6 6.4923 6.6886 0.1109 19 6 7.3198 7.6826 0.6206 20 6 6.8437 8.5486 1.5828 21 6 5.5428 8.4392 2.0495 22 6 4.7090 7.4556 1.5593 23 6 5.1757 6.5792 0.5848 24 6 3.9725 2.5162 0.0000 25 8 5.1704 2.7348 -0.0004 26 7 3.4781 1.2896 0.0000 27 6 4.3672 0.1252 0.0007 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 2.3849 5.6231 0.1087 32 1 5.4319 4.1301 -1.6662 33 1 6.6597 4.1980 -4.2301 34 1 8.3347 7.7766 0.2636 35 1 7.4902 9.3191 1.9763 36 1 5.1821 9.1238 2.8028 37 1 3.6974 7.3688 1.9275 38 1 5.4044 0.4602 0.0006 39 1 4.1792 -0.4749 0.8910 40 1 4.1795 -0.4758 -0.8890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015229399.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:46 Heat of formation + Delta-G solvation = 82.056834 kcal Electronic energy + Delta-G solvation = -26633.594798 eV Core-core repulsion = 22927.160481 eV Total energy + Delta-G solvation = -3706.434317 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.094 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.60634 -40.15645 -36.88873 -36.32971 -34.36669 -34.01246 -32.72602 -30.71168 -28.99739 -28.53454 -27.59020 -26.99231 -25.05303 -23.06919 -22.21352 -21.76217 -20.70831 -20.05176 -18.52621 -17.78883 -17.58562 -16.25817 -16.09286 -15.66428 -15.33334 -15.04334 -14.79966 -14.51273 -14.47957 -13.94722 -13.70501 -13.59732 -13.20372 -13.12833 -12.94692 -12.84005 -12.35902 -12.08793 -11.97611 -11.69074 -11.46647 -11.43846 -11.28655 -11.15234 -10.96028 -10.73422 -10.51452 -10.37161 -9.97362 -9.66497 -9.33999 -9.21713 -8.77461 -8.66503 -7.67263 -7.36379 -6.98977 -6.49149 -4.51378 1.04216 1.35246 1.93056 2.09008 2.14602 2.53966 2.79528 2.92817 2.97076 3.00220 3.44469 3.68475 3.94164 4.33534 4.56669 4.59502 4.86376 4.98484 5.39087 5.40418 5.45584 5.54093 5.54997 5.62731 5.67587 5.68416 5.82668 5.90278 6.07573 6.16356 6.21923 6.29096 6.48322 6.71148 6.72543 6.86337 6.93963 6.98364 7.08623 7.25936 7.34470 7.43554 7.62060 7.74098 7.84689 8.20153 8.26128 8.73056 9.14118 10.09235 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010212 B = 0.004472 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.201756 B = 6260.354493 C = 8389.497652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.543 5.543 3 C 0.392 3.608 4 S -0.067 6.067 5 C -0.300 4.300 6 C 0.161 3.839 7 C -0.287 4.287 8 C 0.191 3.809 9 N -0.270 5.270 10 C -0.345 4.345 11 H 0.111 0.889 12 C 0.047 3.953 13 N -0.841 5.841 14 Si 0.942 3.058 15 H -0.268 1.268 16 H -0.275 1.275 17 H -0.263 1.263 18 C 0.048 3.952 19 C -0.097 4.097 20 C -0.143 4.143 21 C -0.150 4.150 22 C -0.099 4.099 23 C -0.066 4.066 24 C 0.556 3.444 25 O -0.474 6.474 26 N -0.546 5.546 27 C 0.084 3.916 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.178 0.822 33 H 0.284 0.716 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.071 -2.921 4.451 8.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.273 5.273 3 C 0.007 3.993 4 S 0.171 5.829 5 C -0.416 4.416 6 C 0.134 3.866 7 C -0.295 4.295 8 C 0.045 3.955 9 N 0.071 4.929 10 C -0.472 4.472 11 H 0.129 0.871 12 C -0.163 4.163 13 N -0.471 5.471 14 Si 0.766 3.234 15 H -0.193 1.193 16 H -0.200 1.200 17 H -0.187 1.187 18 C -0.057 4.057 19 C -0.117 4.117 20 C -0.162 4.162 21 C -0.169 4.169 22 C -0.118 4.118 23 C -0.070 4.070 24 C 0.346 3.654 25 O -0.347 6.347 26 N -0.275 5.275 27 C -0.060 4.060 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.147 0.853 32 H 0.195 0.805 33 H 0.095 0.905 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.233 -3.451 4.085 8.995 hybrid contribution 1.422 -0.164 -0.547 1.532 sum -5.811 -3.616 3.538 7.704 Atomic orbital electron populations 1.22226 0.85322 1.03052 1.01287 1.71622 1.09987 1.19265 1.26427 1.24263 0.87281 0.92906 0.94897 1.85150 1.10185 0.98623 1.88968 1.22862 0.92413 0.96657 1.29683 1.20885 0.95004 0.90050 0.80706 1.18610 0.94571 1.04926 1.11375 1.22631 0.83481 0.92731 0.96648 1.40101 1.09953 1.18213 1.24637 1.19900 0.85430 1.39958 1.01916 0.87136 1.25543 0.99737 0.95598 0.95432 1.69840 1.26079 1.35667 1.15562 0.85680 0.79810 0.79788 0.78143 1.19279 1.20045 1.18734 1.18498 0.95370 0.94208 0.97629 1.20017 0.98655 0.94845 0.98199 1.20497 0.96139 1.00281 0.99296 1.20633 0.94454 0.99759 1.02055 1.20216 0.98849 0.95389 0.97315 1.18809 0.93281 0.96230 0.98701 1.17536 0.89416 0.81497 0.76930 1.90987 1.14436 1.82378 1.46855 1.44649 1.04323 1.09070 1.69470 1.21817 0.94921 0.86432 1.02812 0.92295 0.92243 0.89561 0.85336 0.80546 0.90495 0.87071 0.87109 0.87307 0.87317 0.88778 0.91158 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.50 59.85 0.63 0.99 16 2 N -0.54 -8.01 10.70 -67.59 -0.72 -8.73 16 3 C 0.39 6.29 7.98 -88.57 -0.71 5.58 16 4 S -0.07 -1.02 22.32 -107.50 -2.40 -3.42 16 5 C -0.30 -5.55 6.46 -37.09 -0.24 -5.79 16 6 C 0.16 2.98 10.22 -37.13 -0.38 2.61 16 7 C -0.29 -6.39 5.61 -103.00 -0.58 -6.97 16 8 C 0.19 4.76 7.19 -15.92 -0.11 4.64 16 9 N -0.27 -6.87 2.88 -59.16 -0.17 -7.04 16 10 C -0.34 -8.69 9.85 -15.02 -0.15 -8.84 16 11 H 0.11 2.63 7.86 -52.48 -0.41 2.22 16 12 C 0.05 1.15 5.32 -17.50 -0.09 1.05 16 13 N -0.84 -21.22 11.04 55.49 0.61 -20.61 16 14 Si 0.94 18.58 29.57 -169.99 -5.03 13.56 16 15 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 16 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 17 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 18 C 0.05 1.14 6.72 -83.80 -0.56 0.57 16 19 C -0.10 -1.99 9.92 -39.40 -0.39 -2.38 16 20 C -0.14 -2.51 10.02 -39.55 -0.40 -2.90 16 21 C -0.15 -2.55 10.04 -39.54 -0.40 -2.95 16 22 C -0.10 -1.84 10.09 -39.36 -0.40 -2.24 16 23 C -0.07 -1.44 6.35 -104.89 -0.67 -2.11 16 24 C 0.56 11.10 7.39 -14.16 -0.10 11.00 16 25 O -0.47 -10.94 12.37 5.12 0.06 -10.87 16 26 N -0.55 -9.48 2.96 -125.61 -0.37 -9.85 16 27 C 0.08 1.24 10.45 59.85 0.63 1.86 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.18 4.67 5.52 -52.48 -0.29 4.38 16 33 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 34 H 0.11 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.09 1.45 7.03 -51.93 -0.37 1.09 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 356.97 15.07 5.38 5.38 Total: -1.00 -28.34 356.97 -10.99 -39.33 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -4.43 Total: 8.13 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -3.92 Total: -5.87 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.65 Total: -46.23 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.06 Total: -10.87 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -2.40 Total: -3.42 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.34 -10.99 -39.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015229399.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.385 kcal (2) G-P(sol) polarization free energy of solvation -28.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds