Wall clock time and date at job start Tue Mar 31 2020 05:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86803 * 120.00407 * 2 1 4 4 H 1.48503 * 109.46681 * 274.98785 * 3 2 1 5 5 H 1.48505 * 109.46701 * 34.98395 * 3 2 1 6 6 H 1.48493 * 109.47280 * 154.98321 * 3 2 1 7 7 C 1.39902 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99286 * 147.85977 * 7 2 1 9 9 C 1.41130 * 120.00426 * 327.87020 * 7 2 1 10 10 C 1.40884 * 120.16300 * 157.56176 * 9 7 2 11 11 C 1.36358 * 119.82942 * 180.02562 * 10 9 7 12 12 C 1.39510 * 120.16931 * 359.97438 * 11 10 9 13 13 N 1.39122 * 119.83856 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99835 * 322.06095 * 13 12 11 15 15 O 1.21706 * 119.99975 * 5.15942 * 14 13 12 16 16 C 1.46700 * 119.99802 * 185.15919 * 14 13 12 17 17 C 1.39995 * 120.86155 * 187.08566 * 16 14 13 18 18 N 1.31617 * 119.28871 * 179.70821 * 17 16 14 19 19 C 1.33678 * 122.37799 * 0.59023 * 18 17 16 20 20 S 1.71460 * 128.65994 * 179.67302 * 19 18 17 21 21 C 1.75588 * 91.30589 * 180.02562 * 20 19 18 22 22 C 1.31037 * 109.49623 * 359.97438 * 21 20 19 23 23 N 1.35127 * 121.40182 * 359.68696 * 19 18 17 24 24 C 1.36389 * 119.26468 * 0.02562 * 23 19 18 25 25 O 1.21872 * 120.30322 * 180.02562 * 24 23 19 26 26 C 1.39516 * 120.32758 * 0.25991 * 12 11 10 27 27 C 1.36359 * 120.16290 * 359.47599 * 26 12 11 28 28 H 0.97005 * 119.99973 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.08213 * 359.97438 * 10 9 7 30 30 H 1.07996 * 119.91315 * 179.97438 * 11 10 9 31 31 H 0.96993 * 120.00080 * 141.78619 * 13 12 11 32 32 H 1.08000 * 120.36078 * 359.97438 * 17 16 14 33 33 H 1.07998 * 125.25048 * 179.97438 * 21 20 19 34 34 H 1.07996 * 122.31205 * 179.97438 * 22 21 20 35 35 H 1.08000 * 119.91886 * 179.72491 * 26 12 11 36 36 H 1.07996 * 120.08463 * 180.23229 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3849 2.1071 -1.3948 5 1 1.4969 2.6199 0.8028 6 1 3.5890 1.4120 0.5920 7 6 2.0081 -1.2116 0.0005 8 1 2.9640 -1.2834 -0.4971 9 6 1.4646 -2.3400 0.6510 10 6 1.8783 -3.6359 0.2845 11 6 1.3483 -4.7214 0.9172 12 6 0.3992 -4.5511 1.9254 13 7 -0.1374 -5.6634 2.5660 14 6 -0.4035 -6.7824 1.8634 15 8 -0.0884 -6.8536 0.6900 16 6 -1.0731 -7.9145 2.5132 17 6 -1.2267 -9.1363 1.8473 18 7 -1.8273 -10.1334 2.4617 19 6 -2.3110 -10.0221 3.7030 20 16 -3.1215 -11.2023 4.6465 21 6 -3.2907 -10.0758 5.9827 22 6 -2.7511 -8.9269 5.6573 23 7 -2.2017 -8.8700 4.4005 24 6 -1.5851 -7.7981 3.8251 25 8 -1.4757 -6.7500 4.4372 26 6 -0.0189 -3.2711 2.2905 27 6 0.5062 -2.1760 1.6705 28 1 -0.4850 0.8401 -0.0004 29 1 2.6125 -3.7693 -0.4961 30 1 1.6641 -5.7154 0.6370 31 1 -0.3162 -5.6350 3.5188 32 1 -0.8527 -9.2609 0.8418 33 1 -3.7662 -10.2959 6.9271 34 1 -2.7401 -8.0829 6.3309 35 1 -0.7572 -3.1471 3.0688 36 1 0.1844 -1.1856 1.9566 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015818178.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:47 Heat of formation + Delta-G solvation = 18.697949 kcal Electronic energy + Delta-G solvation = -25435.307566 eV Core-core repulsion = 21590.292708 eV Total energy + Delta-G solvation = -3845.014859 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.062 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.72430 -41.16252 -39.38228 -39.07347 -38.12539 -36.13812 -34.72459 -32.66096 -32.41607 -31.49912 -30.80875 -28.12922 -26.59286 -25.54362 -24.15655 -23.25340 -22.52374 -21.48881 -20.38037 -19.98383 -19.38124 -19.05662 -18.11908 -17.99416 -17.61120 -17.04351 -16.58814 -16.08805 -15.89296 -15.67927 -15.51328 -15.18831 -15.02555 -14.83476 -14.48265 -14.43125 -13.99815 -13.87056 -13.64778 -13.21327 -12.95908 -12.75623 -12.68380 -12.42962 -11.93132 -11.81252 -11.51969 -11.49183 -11.42372 -11.02937 -10.85078 -10.76281 -10.60299 -9.51499 -9.09734 -8.92984 -8.68981 -6.24923 -1.36706 -0.60110 0.01603 0.27035 0.64975 0.81585 0.88413 1.10555 1.36574 1.42158 1.54666 1.65729 2.19226 2.40523 2.44234 2.67968 2.85387 2.90523 3.65792 3.70545 3.96985 4.01941 4.15851 4.24722 4.33630 4.49302 4.68238 4.84005 4.87584 4.99304 5.09357 5.15551 5.26549 5.44529 5.62025 5.86266 6.00783 6.07894 6.15350 6.20974 6.32189 6.58443 6.77995 6.86859 6.97416 7.40539 8.20628 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.033016 B = 0.002240 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.877325 B =12496.040306 C =13079.670223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.047 3.953 3 Si 0.979 3.021 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.258 1.258 7 C -0.501 4.501 8 H 0.081 0.919 9 C 0.084 3.916 10 C -0.241 4.241 11 C -0.075 4.075 12 C -0.014 4.014 13 N -0.640 5.640 14 C 0.567 3.433 15 O -0.578 6.578 16 C -0.379 4.379 17 C 0.289 3.711 18 N -0.534 5.534 19 C 0.246 3.754 20 S 0.383 5.617 21 C -0.201 4.201 22 C 0.027 3.973 23 N -0.451 5.451 24 C 0.541 3.459 25 O -0.543 6.543 26 C -0.105 4.105 27 C -0.187 4.187 28 H 0.294 0.706 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.412 0.588 32 H 0.199 0.801 33 H 0.258 0.742 34 H 0.209 0.791 35 H 0.108 0.892 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.299 -23.875 16.628 31.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.172 4.172 3 Si 0.798 3.202 4 H -0.183 1.183 5 H -0.186 1.186 6 H -0.181 1.181 7 C -0.528 4.528 8 H 0.099 0.901 9 C 0.081 3.919 10 C -0.261 4.261 11 C -0.094 4.094 12 C -0.107 4.107 13 N -0.291 5.291 14 C 0.357 3.643 15 O -0.461 6.461 16 C -0.395 4.395 17 C 0.129 3.871 18 N -0.262 5.262 19 C -0.113 4.113 20 S 0.636 5.364 21 C -0.337 4.337 22 C -0.098 4.098 23 N -0.157 5.157 24 C 0.345 3.655 25 O -0.422 6.422 26 C -0.125 4.125 27 C -0.207 4.207 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.256 0.744 32 H 0.216 0.784 33 H 0.274 0.726 34 H 0.226 0.774 35 H 0.126 0.874 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.755 -25.154 15.702 31.897 hybrid contribution 0.827 3.250 0.499 3.390 sum -10.928 -21.904 16.201 29.355 Atomic orbital electron populations 1.69979 1.09700 1.31523 1.31430 1.26864 0.95073 1.04863 0.90428 0.85273 0.79595 0.75629 0.79702 1.18296 1.18612 1.18117 1.19726 1.05695 0.95035 1.32347 0.90118 1.17915 0.90753 0.92629 0.90596 1.20750 1.07876 0.92480 1.04960 1.20458 0.95072 0.97773 0.96143 1.17276 1.03118 0.86174 1.04156 1.43352 1.61254 1.11517 1.12954 1.17626 0.78502 0.82562 0.85583 1.90739 1.55936 1.82366 1.17084 1.21047 1.21659 0.99761 0.96999 1.23381 0.81348 0.84031 0.98348 1.68393 1.21550 1.30974 1.05310 1.27083 0.97860 0.91564 0.94822 1.84364 1.48404 1.04442 0.99148 1.26186 1.06314 0.93988 1.07228 1.21559 0.98972 1.03721 0.85555 1.45246 1.43043 1.12583 1.14859 1.17163 0.78848 0.82474 0.87026 1.90679 1.59629 1.27050 1.64880 1.20399 0.99611 0.91593 1.00866 1.20611 1.03658 0.96719 0.99709 0.89502 0.88225 0.87588 0.74397 0.78439 0.72579 0.77409 0.87365 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.55 11.79 21.82 0.26 -43.29 16 2 C 0.05 2.45 4.77 85.24 0.41 2.85 16 3 Si 0.98 38.94 29.66 68.60 2.03 40.97 16 4 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 5 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.50 -28.56 8.94 23.38 0.21 -28.35 16 8 H 0.08 4.44 8.01 -2.91 -0.02 4.42 16 9 C 0.08 4.95 5.57 -21.27 -0.12 4.83 16 10 C -0.24 -13.68 9.74 22.48 0.22 -13.46 16 11 C -0.07 -4.08 8.60 22.14 0.19 -3.89 16 12 C -0.01 -0.73 6.26 38.60 0.24 -0.49 16 13 N -0.64 -29.57 5.12 -306.64 -1.57 -31.14 16 14 C 0.57 24.90 7.55 86.45 0.65 25.55 16 15 O -0.58 -28.50 14.00 -4.37 -0.06 -28.57 16 16 C -0.38 -12.76 5.91 -19.89 -0.12 -12.88 16 17 C 0.29 7.75 10.85 85.15 0.92 8.67 16 18 N -0.53 -11.48 10.39 -196.84 -2.04 -13.53 16 19 C 0.25 4.02 8.07 179.29 1.45 5.47 16 20 S 0.38 1.36 23.14 -56.49 -1.31 0.05 16 21 C -0.20 -0.01 11.13 67.74 0.75 0.75 16 22 C 0.03 0.25 10.52 83.76 0.88 1.13 16 23 N -0.45 -8.70 2.82 -483.54 -1.36 -10.06 16 24 C 0.54 16.24 7.55 84.74 0.64 16.87 16 25 O -0.54 -18.86 14.15 -4.90 -0.07 -18.93 16 26 C -0.10 -5.55 9.90 22.14 0.22 -5.33 16 27 C -0.19 -10.69 8.74 22.48 0.20 -10.50 16 28 H 0.29 14.15 8.30 -92.70 -0.77 13.38 16 29 H 0.10 5.36 8.06 -2.91 -0.02 5.34 16 30 H 0.11 5.68 6.40 -2.91 -0.02 5.66 16 31 H 0.41 17.74 5.65 -92.71 -0.52 17.22 16 32 H 0.20 4.91 7.73 -2.91 -0.02 4.89 16 33 H 0.26 -2.55 8.06 -2.91 -0.02 -2.57 16 34 H 0.21 1.56 8.00 -2.91 -0.02 1.54 16 35 H 0.11 5.18 8.06 -2.91 -0.02 5.16 16 36 H 0.10 5.71 6.54 -2.91 -0.02 5.69 16 Total: -1.00 -83.42 331.28 3.27 -80.15 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 0.65 Total: 33.12 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 6.74 Total: -8.78 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -4.72 Total: -98.02 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: -0.13 Total: -47.49 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -1.31 Total: 0.05 kcal Total: -83.42 3.27 -80.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015818178.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.849 kcal (2) G-P(sol) polarization free energy of solvation -83.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds