Wall clock time and date at job start Tue Mar 31 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30761 * 119.99726 * 2 1 4 4 N 1.40095 * 120.00065 * 359.97438 * 3 2 1 5 5 C 1.34783 * 120.00203 * 180.02562 * 4 3 2 6 6 O 1.21998 * 119.99255 * 359.97438 * 5 4 3 7 7 C 1.40553 * 120.00381 * 180.02562 * 5 4 3 8 8 H 1.08005 * 119.99989 * 359.97438 * 7 5 4 9 9 C 1.40185 * 120.00264 * 179.97438 * 7 5 4 10 10 N 1.30612 * 119.99825 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 120.00417 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47067 * 89.99727 * 11 9 7 13 13 H 1.48503 * 109.47267 * 209.99919 * 11 9 7 14 14 H 1.48503 * 109.46991 * 330.00043 * 11 9 7 15 15 C 1.46641 * 119.99975 * 179.97438 * 2 1 3 16 16 C 1.40341 * 120.10636 * 180.02562 * 15 2 1 17 17 C 1.36501 * 119.89180 * 179.97438 * 16 15 2 18 18 C 1.39443 * 120.10535 * 359.97438 * 17 16 15 19 19 N 1.39097 * 119.88982 * 180.02562 * 18 17 16 20 20 C 1.34782 * 120.00308 * 326.34446 * 19 18 17 21 21 O 1.21704 * 119.99238 * 354.72050 * 20 19 18 22 22 C 1.46585 * 120.00183 * 174.71753 * 20 19 18 23 23 C 1.36601 * 125.98780 * 179.97438 * 22 20 19 24 24 C 1.40346 * 106.70481 * 179.73856 * 23 22 20 25 25 C 1.35152 * 107.11634 * 359.97438 * 24 23 22 26 26 O 1.33932 * 108.77634 * 0.02562 * 25 24 23 27 27 C 1.39437 * 120.21868 * 0.27864 * 18 17 16 28 28 C 1.36500 * 120.10815 * 359.48377 * 27 18 17 29 29 H 1.09002 * 109.47180 * 270.00318 * 1 2 3 30 30 H 1.09002 * 109.46903 * 30.00001 * 1 2 3 31 31 H 1.09002 * 109.46845 * 150.00289 * 1 2 3 32 32 H 0.97000 * 120.00287 * 0.02562 * 4 3 2 33 33 H 0.97006 * 120.00521 * 180.02562 * 10 9 7 34 34 H 1.08001 * 120.05674 * 359.95336 * 16 15 2 35 35 H 1.07995 * 119.94931 * 180.02562 * 17 16 15 36 36 H 0.96997 * 120.00224 * 146.33925 * 19 18 17 37 37 H 1.08002 * 126.65157 * 359.71864 * 23 22 20 38 38 H 1.07995 * 126.44271 * 179.97438 * 24 23 22 39 39 H 1.08009 * 125.61144 * 179.97438 * 25 24 23 40 40 H 1.07999 * 119.94726 * 179.72522 * 27 18 17 41 41 H 1.08000 * 120.05578 * 180.23087 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1325 0.0000 4 7 1.4603 2.3457 -0.0005 5 6 2.1341 3.5130 -0.0011 6 8 3.3541 3.5129 -0.0006 7 6 1.4313 4.7302 -0.0011 8 1 0.3513 4.7302 -0.0011 9 6 2.1322 5.9443 -0.0011 10 7 3.4383 5.9443 -0.0006 11 14 1.1982 7.5621 -0.0018 12 1 0.9501 7.9910 1.3981 13 1 2.0011 8.5969 -0.7017 14 1 -0.0991 7.3843 -0.7023 15 6 2.2402 -1.2700 0.0006 16 6 3.6436 -1.2726 0.0011 17 6 4.3217 -2.4572 0.0022 18 6 3.6222 -3.6635 0.0032 19 7 4.3177 -4.8681 0.0049 20 6 5.4963 -4.9667 -0.6414 21 8 5.9058 -4.0329 -1.3059 22 6 6.2849 -6.1985 -0.5440 23 6 7.4893 -6.4303 -1.1454 24 6 7.8809 -7.7269 -0.7778 25 6 6.9113 -8.2235 0.0222 26 8 5.9514 -7.2998 0.1605 27 6 2.2278 -3.6662 -0.0026 28 6 1.5408 -2.4867 0.0012 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 0.4903 2.3457 -0.0005 33 1 3.9234 6.7844 -0.0002 34 1 4.1863 -0.3388 0.0004 35 1 5.4017 -2.4603 0.0030 36 1 3.9545 -5.6372 0.4712 37 1 8.0344 -5.7482 -1.7810 38 1 8.7867 -8.2328 -1.0778 39 1 6.9103 -9.2042 0.4747 40 1 1.6905 -4.6030 -0.0062 41 1 0.4608 -2.4898 0.0004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016121539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:58 Heat of formation + Delta-G solvation = 21.008549 kcal Electronic energy + Delta-G solvation = -27022.955357 eV Core-core repulsion = 22871.120917 eV Total energy + Delta-G solvation = -4151.834440 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.12363 -40.57666 -38.73894 -37.65272 -35.99722 -34.77413 -33.49975 -32.70973 -31.75231 -31.11325 -30.52335 -28.65278 -28.06171 -26.34063 -24.53705 -22.64759 -22.51559 -22.12240 -20.79293 -20.32514 -19.02259 -18.80738 -17.85970 -17.52623 -16.79107 -16.76159 -15.95178 -15.58473 -15.36951 -14.98273 -14.60743 -14.20402 -14.08393 -13.95695 -13.87737 -13.50147 -13.45105 -13.29946 -13.13019 -12.76699 -12.72511 -12.54133 -12.17469 -11.67191 -11.41381 -11.25414 -11.12544 -10.79852 -10.63439 -10.52435 -10.50090 -10.36020 -10.15284 -9.38770 -9.19122 -9.00134 -8.89482 -8.34663 -7.74299 -7.08760 -6.38372 -4.93990 0.52091 1.10314 1.61295 1.92244 2.21201 2.66989 2.81251 2.97094 3.07224 3.11574 3.15755 3.75822 4.07484 4.11589 4.21567 4.45143 4.46163 4.56658 4.90021 4.95577 5.01998 5.16917 5.32010 5.41798 5.42281 5.50558 5.54906 5.58313 5.72195 5.78388 5.81535 5.86339 6.08308 6.18719 6.20533 6.39717 6.43365 6.51571 6.78644 6.94460 7.07597 7.12192 7.21679 7.70616 7.85925 8.00019 8.70757 8.77548 9.31816 10.40557 10.66774 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024290 B = 0.001800 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.445969 B =15553.909248 C =16581.799233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.037 3.963 3 N -0.183 5.183 4 N -0.586 5.586 5 C 0.557 3.443 6 O -0.553 6.553 7 C -0.536 4.536 8 H 0.070 0.930 9 C 0.088 3.912 10 N -0.743 5.743 11 Si 0.917 3.083 12 H -0.269 1.269 13 H -0.276 1.276 14 H -0.262 1.262 15 C -0.018 4.018 16 C -0.072 4.072 17 C -0.116 4.116 18 C 0.129 3.871 19 N -0.658 5.658 20 C 0.600 3.400 21 O -0.493 6.493 22 C -0.081 4.081 23 C -0.114 4.114 24 C -0.225 4.225 25 C -0.004 4.004 26 O -0.165 6.165 27 C -0.140 4.140 28 C -0.093 4.093 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.370 0.630 33 H 0.274 0.726 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.413 0.587 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.212 0.788 40 H 0.125 0.875 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.055 -28.484 1.196 28.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 N 0.006 4.994 4 N -0.333 5.333 5 C 0.365 3.635 6 O -0.432 6.432 7 C -0.573 4.573 8 H 0.089 0.911 9 C -0.136 4.136 10 N -0.370 5.370 11 Si 0.741 3.259 12 H -0.194 1.194 13 H -0.201 1.201 14 H -0.186 1.186 15 C -0.021 4.021 16 C -0.093 4.093 17 C -0.136 4.136 18 C 0.034 3.966 19 N -0.302 5.302 20 C 0.387 3.613 21 O -0.368 6.368 22 C -0.133 4.133 23 C -0.135 4.135 24 C -0.244 4.244 25 C -0.074 4.074 26 O -0.061 6.061 27 C -0.160 4.160 28 C -0.114 4.114 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.207 0.793 33 H 0.085 0.915 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.249 0.751 37 H 0.181 0.819 38 H 0.176 0.824 39 H 0.228 0.772 40 H 0.142 0.858 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.914 -27.067 0.887 27.149 hybrid contribution -1.744 -0.034 0.138 1.749 sum 0.170 -27.100 1.025 27.120 Atomic orbital electron populations 1.21084 0.93015 1.03029 1.02584 1.22756 0.92959 0.91446 1.07947 1.75007 1.26876 0.92435 1.05094 1.48099 1.07661 1.01794 1.75706 1.16780 0.87887 0.80383 0.78433 1.90733 1.13412 1.85309 1.53785 1.19710 0.94438 0.89674 1.53482 0.91140 1.25766 0.94681 1.00679 0.92468 1.70020 1.07345 1.28046 1.31627 0.86216 0.80112 0.80502 0.79091 1.19427 1.20126 1.18647 1.18439 0.92635 0.90523 1.00460 1.21221 0.93378 0.98529 0.96166 1.20839 1.00800 0.90639 1.01314 1.17808 0.90935 0.84932 1.02883 1.43097 1.21128 1.13287 1.52708 1.16589 0.80556 0.84619 0.79503 1.90965 1.69538 1.36909 1.39397 1.21954 0.99049 0.88655 1.03644 1.22062 0.94352 0.97076 0.99979 1.21909 1.02517 0.96208 1.03744 1.24462 0.87645 0.94479 1.00845 1.84053 1.43274 1.21838 1.56907 1.20429 0.91595 0.98673 1.05345 1.20803 0.99793 0.90674 1.00170 0.90966 0.91645 0.90775 0.79333 0.91462 0.84090 0.84899 0.75058 0.81948 0.82405 0.77178 0.85752 0.85141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.04 36.01 0.33 -1.55 16 2 C 0.04 0.66 7.10 -79.66 -0.57 0.09 16 3 N -0.18 -4.22 10.19 35.07 0.36 -3.87 16 4 N -0.59 -14.28 6.11 28.90 0.18 -14.10 16 5 C 0.56 16.44 7.65 -15.38 -0.12 16.32 16 6 O -0.55 -18.74 15.19 4.92 0.07 -18.67 16 7 C -0.54 -15.00 9.25 -37.98 -0.35 -15.35 16 8 H 0.07 1.76 7.85 -52.48 -0.41 1.35 16 9 C 0.09 2.40 5.50 -17.34 -0.10 2.31 16 10 N -0.74 -21.98 11.70 55.56 0.65 -21.33 16 11 Si 0.92 19.51 29.56 -169.99 -5.02 14.48 16 12 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 13 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 14 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 15 C -0.02 -0.29 5.88 -104.92 -0.62 -0.90 16 16 C -0.07 -1.24 9.54 -39.42 -0.38 -1.62 16 17 C -0.12 -1.78 8.58 -39.76 -0.34 -2.12 16 18 C 0.13 1.63 6.28 -83.67 -0.53 1.11 16 19 N -0.66 -6.78 5.30 -10.99 -0.06 -6.84 16 20 C 0.60 7.20 7.51 -12.89 -0.10 7.10 16 21 O -0.49 -7.66 14.54 5.19 0.08 -7.59 16 22 C -0.08 -0.79 7.13 -36.81 -0.26 -1.05 16 23 C -0.11 -1.00 10.62 -39.38 -0.42 -1.42 16 24 C -0.22 -1.37 10.87 -39.89 -0.43 -1.81 16 25 C 0.00 -0.02 12.08 29.63 0.36 0.33 16 26 O -0.17 -1.27 10.41 4.99 0.05 -1.22 16 27 C -0.14 -1.54 9.90 -39.76 -0.39 -1.93 16 28 C -0.09 -1.14 9.31 -39.42 -0.37 -1.51 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.92 6.37 -51.93 -0.33 0.59 16 31 H 0.07 0.79 6.45 -51.93 -0.34 0.46 16 32 H 0.37 7.62 6.41 -182.60 -1.17 6.45 16 33 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 34 H 0.14 2.75 7.54 -52.49 -0.40 2.35 16 35 H 0.13 2.10 6.41 -52.49 -0.34 1.77 16 36 H 0.41 2.93 8.58 -40.82 -0.35 2.58 16 37 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.21 0.17 8.06 -52.48 -0.42 -0.25 16 40 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.13 1.24 6.35 -52.49 -0.33 0.91 16 LS Contribution 365.18 15.07 5.50 5.50 Total: -1.00 -38.50 365.18 -7.38 -45.88 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -4.91 Total: 9.73 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -4.28 Total: -1.99 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 1.13 Total: -46.14 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: 0.20 Total: -27.47 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -38.50 -7.38 -45.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016121539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.892 kcal (2) G-P(sol) polarization free energy of solvation -38.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds