Wall clock time and date at job start Tue Mar 31 2020 06:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30761 * 119.99726 * 2 1 4 4 N 1.40095 * 120.00065 * 359.97438 * 3 2 1 5 5 C 1.34783 * 120.00203 * 180.02562 * 4 3 2 6 6 O 1.21998 * 119.99255 * 359.97438 * 5 4 3 7 7 C 1.40553 * 120.00381 * 180.02562 * 5 4 3 8 8 H 1.08005 * 119.99989 * 359.97438 * 7 5 4 9 9 C 1.40185 * 120.00264 * 179.97438 * 7 5 4 10 10 N 1.30612 * 119.99825 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 120.00417 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47067 * 89.99727 * 11 9 7 13 13 H 1.48503 * 109.47267 * 209.99919 * 11 9 7 14 14 H 1.48503 * 109.46991 * 330.00043 * 11 9 7 15 15 C 1.46641 * 119.99975 * 179.97438 * 2 1 3 16 16 C 1.40341 * 120.10636 * 180.02562 * 15 2 1 17 17 C 1.36501 * 119.89180 * 179.97438 * 16 15 2 18 18 C 1.39443 * 120.10535 * 359.97438 * 17 16 15 19 19 N 1.39097 * 119.88982 * 180.02562 * 18 17 16 20 20 C 1.34782 * 120.00308 * 326.34446 * 19 18 17 21 21 O 1.21704 * 119.99238 * 354.72050 * 20 19 18 22 22 C 1.46585 * 120.00183 * 174.71753 * 20 19 18 23 23 C 1.36601 * 125.98780 * 179.97438 * 22 20 19 24 24 C 1.40346 * 106.70481 * 179.73856 * 23 22 20 25 25 C 1.35152 * 107.11634 * 359.97438 * 24 23 22 26 26 O 1.33932 * 108.77634 * 0.02562 * 25 24 23 27 27 C 1.39437 * 120.21868 * 0.27864 * 18 17 16 28 28 C 1.36500 * 120.10815 * 359.48377 * 27 18 17 29 29 H 1.09002 * 109.47180 * 270.00318 * 1 2 3 30 30 H 1.09002 * 109.46903 * 30.00001 * 1 2 3 31 31 H 1.09002 * 109.46845 * 150.00289 * 1 2 3 32 32 H 0.97000 * 120.00287 * 0.02562 * 4 3 2 33 33 H 0.97006 * 120.00521 * 180.02562 * 10 9 7 34 34 H 1.08001 * 120.05674 * 359.95336 * 16 15 2 35 35 H 1.07995 * 119.94931 * 180.02562 * 17 16 15 36 36 H 0.96997 * 120.00224 * 146.33925 * 19 18 17 37 37 H 1.08002 * 126.65157 * 359.71864 * 23 22 20 38 38 H 1.07995 * 126.44271 * 179.97438 * 24 23 22 39 39 H 1.08009 * 125.61144 * 179.97438 * 25 24 23 40 40 H 1.07999 * 119.94726 * 179.72522 * 27 18 17 41 41 H 1.08000 * 120.05578 * 180.23087 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1325 0.0000 4 7 1.4603 2.3457 -0.0005 5 6 2.1341 3.5130 -0.0011 6 8 3.3541 3.5129 -0.0006 7 6 1.4313 4.7302 -0.0011 8 1 0.3513 4.7302 -0.0011 9 6 2.1322 5.9443 -0.0011 10 7 3.4383 5.9443 -0.0006 11 14 1.1982 7.5621 -0.0018 12 1 0.9501 7.9910 1.3981 13 1 2.0011 8.5969 -0.7017 14 1 -0.0991 7.3843 -0.7023 15 6 2.2402 -1.2700 0.0006 16 6 3.6436 -1.2726 0.0011 17 6 4.3217 -2.4572 0.0022 18 6 3.6222 -3.6635 0.0032 19 7 4.3177 -4.8681 0.0049 20 6 5.4963 -4.9667 -0.6414 21 8 5.9058 -4.0329 -1.3059 22 6 6.2849 -6.1985 -0.5440 23 6 7.4893 -6.4303 -1.1454 24 6 7.8809 -7.7269 -0.7778 25 6 6.9113 -8.2235 0.0222 26 8 5.9514 -7.2998 0.1605 27 6 2.2278 -3.6662 -0.0026 28 6 1.5408 -2.4867 0.0012 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 0.4903 2.3457 -0.0005 33 1 3.9234 6.7844 -0.0002 34 1 4.1863 -0.3388 0.0004 35 1 5.4017 -2.4603 0.0030 36 1 3.9545 -5.6372 0.4712 37 1 8.0344 -5.7482 -1.7810 38 1 8.7867 -8.2328 -1.0778 39 1 6.9103 -9.2042 0.4747 40 1 1.6905 -4.6030 -0.0062 41 1 0.4608 -2.4898 0.0004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016121539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:57 Heat of formation + Delta-G solvation = -8.619918 kcal Electronic energy + Delta-G solvation = -27024.240144 eV Core-core repulsion = 22871.120917 eV Total energy + Delta-G solvation = -4153.119227 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.70226 -41.59083 -40.03344 -39.41837 -37.57729 -36.00836 -34.76079 -34.08948 -33.38251 -32.27729 -31.38165 -30.10444 -29.23440 -28.22057 -25.53631 -23.70614 -23.61881 -22.75715 -22.31440 -21.33408 -20.44693 -19.81443 -19.58172 -18.57952 -17.74333 -17.51178 -17.42388 -17.30959 -16.44164 -16.02633 -15.84615 -15.68021 -15.46843 -15.23921 -15.07946 -14.72451 -14.50734 -14.43055 -14.17546 -13.99689 -13.72642 -13.59192 -13.35293 -13.29378 -12.86948 -12.81668 -12.70921 -12.41267 -12.18071 -12.02083 -11.71377 -11.35783 -11.09040 -10.99800 -10.83484 -10.02558 -9.99841 -9.89027 -9.67257 -8.65209 -8.43505 -7.11113 -0.38062 0.08055 0.49520 1.29061 1.37717 1.39966 1.48108 1.56952 1.57880 1.99249 2.05672 2.08613 2.37205 2.41377 2.91629 3.58340 3.63360 3.63895 3.87434 3.91018 3.98728 4.08995 4.23318 4.37924 4.39135 4.48789 4.57652 4.64737 4.70390 4.87687 4.92189 4.94179 5.11886 5.13405 5.17349 5.26359 5.29267 5.36914 5.50722 5.65637 5.77222 5.80477 5.96632 6.03097 6.25713 6.65963 6.83204 6.97454 7.46987 8.40989 8.58859 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024290 B = 0.001800 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.445969 B =15553.909248 C =16581.799233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.082 3.918 3 N -0.272 5.272 4 N -0.592 5.592 5 C 0.542 3.458 6 O -0.620 6.620 7 C -0.561 4.561 8 H 0.096 0.904 9 C 0.027 3.973 10 N -0.802 5.802 11 Si 1.012 2.988 12 H -0.257 1.257 13 H -0.270 1.270 14 H -0.243 1.243 15 C -0.058 4.058 16 C -0.090 4.090 17 C -0.137 4.137 18 C 0.144 3.856 19 N -0.644 5.644 20 C 0.599 3.401 21 O -0.541 6.541 22 C -0.111 4.111 23 C -0.122 4.122 24 C -0.237 4.237 25 C 0.022 3.978 26 O -0.166 6.166 27 C -0.125 4.125 28 C -0.064 4.064 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.117 0.883 32 H 0.384 0.616 33 H 0.281 0.719 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.433 0.567 37 H 0.154 0.846 38 H 0.183 0.817 39 H 0.261 0.739 40 H 0.178 0.822 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.575 -32.671 1.795 32.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 N -0.081 5.081 4 N -0.338 5.338 5 C 0.351 3.649 6 O -0.506 6.506 7 C -0.598 4.598 8 H 0.115 0.885 9 C -0.191 4.191 10 N -0.430 5.430 11 Si 0.830 3.170 12 H -0.181 1.181 13 H -0.195 1.195 14 H -0.166 1.166 15 C -0.060 4.060 16 C -0.112 4.112 17 C -0.157 4.157 18 C 0.048 3.952 19 N -0.290 5.290 20 C 0.389 3.611 21 O -0.420 6.420 22 C -0.163 4.163 23 C -0.143 4.143 24 C -0.256 4.256 25 C -0.047 4.047 26 O -0.061 6.061 27 C -0.145 4.145 28 C -0.084 4.084 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.135 0.865 32 H 0.223 0.777 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.132 0.868 36 H 0.273 0.727 37 H 0.172 0.828 38 H 0.200 0.800 39 H 0.276 0.724 40 H 0.195 0.805 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -1.671 -31.345 1.508 31.426 hybrid contribution -0.554 0.685 -0.032 0.881 sum -2.226 -30.661 1.476 30.777 Atomic orbital electron populations 1.21280 0.89225 1.04876 1.04594 1.23681 0.95758 0.90717 1.00548 1.75118 1.28223 0.93120 1.11662 1.47259 1.07861 1.01691 1.77004 1.17226 0.87399 0.82373 0.77868 1.90663 1.16011 1.86887 1.57004 1.20285 0.95799 0.90003 1.53673 0.88548 1.27217 0.95560 1.05534 0.90777 1.70206 1.10101 1.29777 1.32912 0.84817 0.78713 0.73700 0.79791 1.18121 1.19476 1.16616 1.18617 0.91965 0.91473 1.03989 1.20971 0.94626 0.97475 0.98089 1.20700 1.00172 0.91601 1.03236 1.17969 0.92093 0.84609 1.00489 1.43001 1.20593 1.13046 1.52320 1.16911 0.80643 0.84906 0.78689 1.90947 1.70613 1.38860 1.41581 1.21450 0.99531 0.89073 1.06221 1.22306 0.94143 0.98403 0.99402 1.22240 1.04010 0.95063 1.04278 1.25474 0.85789 0.94927 0.98546 1.84048 1.44024 1.21513 1.56518 1.20953 0.90395 1.00426 1.02677 1.21242 1.01731 0.88881 0.96571 0.88617 0.92164 0.86485 0.77660 0.90862 0.88592 0.86778 0.72721 0.82823 0.79980 0.72380 0.80493 0.80752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.04 71.24 0.64 -2.79 16 2 C 0.08 2.96 7.10 44.91 0.32 3.28 16 3 N -0.27 -13.54 10.19 -42.96 -0.44 -13.98 16 4 N -0.59 -30.70 6.11 -180.57 -1.10 -31.80 16 5 C 0.54 34.32 7.65 84.80 0.65 34.97 16 6 O -0.62 -45.87 15.19 -5.31 -0.08 -45.95 16 7 C -0.56 -32.69 9.25 23.31 0.22 -32.48 16 8 H 0.10 4.87 7.85 -2.91 -0.02 4.85 16 9 C 0.03 1.55 5.50 85.35 0.47 2.02 16 10 N -0.80 -50.28 11.70 21.86 0.26 -50.03 16 11 Si 1.01 40.52 29.56 68.60 2.03 42.55 16 12 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 13 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 14 H -0.24 -8.89 7.11 99.48 0.71 -8.18 16 15 C -0.06 -1.84 5.88 -20.06 -0.12 -1.95 16 16 C -0.09 -3.40 9.54 22.38 0.21 -3.18 16 17 C -0.14 -4.49 8.58 22.15 0.19 -4.30 16 18 C 0.14 3.44 6.28 38.57 0.24 3.69 16 19 N -0.64 -12.23 5.30 -306.88 -1.63 -13.86 16 20 C 0.60 14.53 7.51 86.42 0.65 15.18 16 21 O -0.54 -18.04 14.54 -4.36 -0.06 -18.10 16 22 C -0.11 -2.09 7.13 24.07 0.17 -1.92 16 23 C -0.12 -2.10 10.62 22.40 0.24 -1.86 16 24 C -0.24 -2.29 10.87 22.07 0.24 -2.05 16 25 C 0.02 0.14 12.08 67.11 0.81 0.95 16 26 O -0.17 -2.08 10.41 -5.05 -0.05 -2.13 16 27 C -0.12 -2.16 9.90 22.15 0.22 -1.94 16 28 C -0.06 -1.29 9.31 22.38 0.21 -1.08 16 29 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.06 1.59 6.37 -2.39 -0.02 1.57 16 31 H 0.12 1.86 6.45 -2.39 -0.02 1.84 16 32 H 0.38 16.46 6.41 -213.32 -1.37 15.09 16 33 H 0.28 15.73 8.29 -92.70 -0.77 14.96 16 34 H 0.10 4.40 7.54 -2.91 -0.02 4.38 16 35 H 0.11 4.10 6.41 -2.91 -0.02 4.08 16 36 H 0.43 4.74 8.58 -92.71 -0.79 3.94 16 37 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 39 H 0.26 -1.12 8.06 -2.91 -0.02 -1.14 16 40 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 41 H 0.18 2.05 6.35 -2.91 -0.02 2.03 16 Total: -1.00 -98.46 365.18 3.24 -95.22 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: -1.04 Total: 31.56 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 5.36 Total: 6.52 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -2.91 Total: -109.66 kcal Atomic # 8 Polarization: -65.99 SS G_CDS: -0.20 Total: -66.19 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -98.46 3.24 -95.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016121539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.598 kcal (2) G-P(sol) polarization free energy of solvation -98.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds