Wall clock time and date at job start Tue Mar 31 2020 05:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00023 * 2 1 4 4 H 1.48497 * 109.47076 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47365 * 300.00019 * 3 2 1 6 6 H 1.48493 * 109.47301 * 60.00257 * 3 2 1 7 7 C 1.37873 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99948 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00098 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47254 * 180.02562 * 9 7 2 11 11 C 1.46502 * 120.00457 * 270.00371 * 10 9 7 12 12 C 1.53000 * 109.46742 * 269.99949 * 11 10 9 13 13 C 1.50706 * 109.46770 * 179.97438 * 12 11 10 14 14 C 1.38240 * 120.00040 * 269.73054 * 13 12 11 15 15 C 1.38234 * 119.99585 * 179.76943 * 14 13 12 16 16 C 1.38239 * 120.00224 * 0.49994 * 15 14 13 17 17 C 1.38229 * 119.99667 * 359.74997 * 16 15 14 18 18 C 1.38231 * 120.00624 * 0.02562 * 17 16 15 19 19 C 1.34780 * 120.00015 * 90.00126 * 10 9 7 20 20 S 1.71195 * 120.00338 * 180.02562 * 19 10 9 21 21 N 1.34783 * 119.99713 * 0.02562 * 19 10 9 22 22 C 1.39890 * 119.99746 * 184.15043 * 21 19 10 23 23 C 1.38882 * 120.07095 * 314.81460 * 22 21 19 24 24 C 1.38108 * 119.92775 * 179.97438 * 23 22 21 25 25 C 1.38287 * 120.07271 * 359.97438 * 24 23 22 26 26 C 1.38280 * 120.13952 * 0.04167 * 25 24 23 27 27 C 1.38104 * 120.07292 * 359.95355 * 26 25 24 28 28 H 0.97002 * 119.99605 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47236 * 60.00653 * 9 7 2 30 30 H 1.09005 * 109.47586 * 300.00732 * 9 7 2 31 31 H 1.09000 * 109.46614 * 29.99562 * 11 10 9 32 32 H 1.08998 * 109.47340 * 149.99784 * 11 10 9 33 33 H 1.08992 * 109.47413 * 299.99513 * 12 11 10 34 34 H 1.08998 * 109.47337 * 59.99834 * 12 11 10 35 35 H 1.07997 * 119.99797 * 359.97438 * 14 13 12 36 36 H 1.08002 * 119.99750 * 180.22717 * 15 14 13 37 37 H 1.07998 * 119.99859 * 179.73085 * 16 15 14 38 38 H 1.08001 * 119.99535 * 179.97438 * 17 16 15 39 39 H 1.07998 * 120.00790 * 179.97438 * 18 17 16 40 40 H 0.96998 * 120.00064 * 4.14930 * 21 19 10 41 41 H 1.08000 * 120.03852 * 359.70882 * 23 22 21 42 42 H 1.08003 * 119.96507 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.92472 * 179.97438 * 25 24 23 44 44 H 1.08004 * 119.95791 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.03251 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6790 -4.1695 -1.2692 12 6 1.7482 -5.3007 -1.7109 13 6 2.2376 -5.8730 -3.0163 14 6 1.7838 -5.3511 -4.2132 15 6 2.2364 -5.8730 -5.4106 16 6 3.1348 -6.9237 -5.4110 17 6 3.5845 -7.4489 -4.2141 18 6 3.1356 -6.9241 -3.0167 19 6 2.6407 -4.1250 1.1667 20 16 3.7536 -5.4258 1.1668 21 7 2.2024 -3.6130 2.3339 22 6 2.7217 -4.0856 3.5438 23 6 2.8683 -5.4509 3.7523 24 6 3.3818 -5.9142 4.9477 25 6 3.7503 -5.0203 5.9364 26 6 3.6054 -3.6604 5.7320 27 6 3.0926 -3.1906 4.5389 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6245 -2.5571 0.8896 31 1 2.6867 -3.3878 -2.0288 32 1 3.6884 -4.5596 -1.1388 33 1 1.7404 -6.0823 -0.9513 34 1 0.7388 -4.9106 -1.8413 35 1 1.0783 -4.5334 -4.2128 36 1 1.8848 -5.4628 -6.3457 37 1 3.4851 -7.3343 -6.3465 38 1 4.2861 -8.2701 -4.2145 39 1 3.4866 -7.3347 -2.0816 40 1 1.5269 -2.9169 2.3350 41 1 2.5770 -6.1497 2.9821 42 1 3.4956 -6.9757 5.1106 43 1 4.1513 -5.3852 6.8705 44 1 3.8938 -2.9649 6.5064 45 1 2.9793 -2.1284 4.3801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016849589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:51 Heat of formation + Delta-G solvation = 66.707636 kcal Electronic energy + Delta-G solvation = -26108.362893 eV Core-core repulsion = 22602.521991 eV Total energy + Delta-G solvation = -3505.840902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.84434 -39.18978 -38.12875 -35.37125 -33.47092 -32.59738 -30.75697 -30.67841 -29.53764 -28.76887 -27.43614 -24.46726 -23.87954 -22.54851 -22.41901 -21.85910 -20.86864 -20.33798 -18.07065 -17.44891 -16.94909 -16.60236 -16.07625 -15.47680 -15.17175 -14.98722 -14.84182 -14.80017 -13.95142 -13.86424 -13.71321 -13.33447 -13.14101 -12.92907 -12.85763 -12.73141 -12.67555 -12.24021 -11.79917 -11.67676 -11.36839 -11.29529 -11.09490 -11.01956 -10.93622 -10.81898 -10.73733 -10.55136 -10.22174 -10.07828 -9.12032 -8.88298 -8.79619 -8.70475 -8.59322 -7.90476 -7.21183 -6.59178 -6.47942 -4.60009 1.36983 1.48280 1.52860 1.74349 2.13814 2.52587 3.05398 3.15103 3.15992 3.21367 3.81591 3.94219 4.11287 4.12335 4.85030 4.98085 4.98867 5.10936 5.17894 5.21092 5.26780 5.38193 5.39811 5.54838 5.64602 5.67603 5.69370 5.79261 5.86176 5.92906 6.01018 6.13881 6.20771 6.25296 6.32068 6.45464 6.57294 6.59198 6.61428 6.62106 6.68679 6.79832 6.82931 6.89127 7.07669 7.13612 7.27660 7.43859 7.57900 7.61665 7.84528 8.48626 9.10668 10.57396 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007179 B = 0.004373 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3899.160918 B = 6402.081281 C = 9791.854871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.070 3.930 3 Si 0.902 3.098 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.549 4.549 8 H 0.067 0.933 9 C 0.222 3.778 10 N -0.535 5.535 11 C 0.120 3.880 12 C -0.093 4.093 13 C -0.069 4.069 14 C -0.116 4.116 15 C -0.123 4.123 16 C -0.129 4.129 17 C -0.122 4.122 18 C -0.107 4.107 19 C 0.573 3.427 20 S -0.693 6.693 21 N -0.634 5.634 22 C 0.138 3.862 23 C -0.069 4.069 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.122 4.122 27 C -0.126 4.126 28 H 0.269 0.731 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.128 0.872 40 H 0.417 0.583 41 H 0.147 0.853 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 -9.442 0.138 9.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.134 4.134 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.587 4.587 8 H 0.085 0.915 9 C 0.100 3.900 10 N -0.236 5.236 11 C -0.003 4.003 12 C -0.132 4.132 13 C -0.070 4.070 14 C -0.134 4.134 15 C -0.141 4.141 16 C -0.147 4.147 17 C -0.140 4.140 18 C -0.125 4.125 19 C 0.212 3.788 20 S -0.561 6.561 21 N -0.262 5.262 22 C 0.045 3.955 23 C -0.092 4.092 24 C -0.141 4.141 25 C -0.144 4.144 26 C -0.141 4.141 27 C -0.147 4.147 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.259 0.741 41 H 0.165 0.835 42 H 0.139 0.861 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.228 -10.055 -0.051 10.299 hybrid contribution -0.495 2.215 -0.159 2.275 sum 1.733 -7.840 -0.210 8.032 Atomic orbital electron populations 1.69918 1.06071 1.27895 1.48376 1.24944 0.94927 0.99604 0.93969 0.86348 0.80202 0.82496 0.78047 1.19436 1.20501 1.20550 1.21384 0.93832 0.89629 1.53904 0.91518 1.19814 0.87745 0.82971 0.99425 1.47578 1.41209 1.31366 1.03464 1.21813 0.99954 0.95602 0.82934 1.20913 0.99150 0.98748 0.94375 1.19765 0.96903 0.95842 0.94483 1.21139 1.00322 0.99925 0.92037 1.21097 0.98090 0.97068 0.97845 1.21095 0.98415 0.97367 0.97867 1.21131 1.00153 1.00183 0.92579 1.21199 0.96701 0.96158 0.98425 1.22033 0.86109 0.88628 0.82059 1.92944 1.42054 1.27207 1.93922 1.42313 1.41194 1.40210 1.02446 1.17488 1.00325 0.93006 0.84724 1.21549 0.96855 0.94485 0.96262 1.20926 1.00596 0.99487 0.93058 1.21092 1.00799 0.93397 0.99087 1.20790 1.00914 0.95598 0.96821 1.20997 1.00200 0.99195 0.94261 0.92092 0.92801 0.94704 0.89479 0.87544 0.89798 0.91082 0.86010 0.86387 0.86572 0.86347 0.85437 0.74095 0.83514 0.86126 0.86538 0.86170 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.55 13.29 55.43 0.74 -21.82 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 19.53 29.54 -169.99 -5.02 14.50 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 7 C -0.55 -13.18 9.39 -34.44 -0.32 -13.50 16 8 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.22 4.73 4.96 -5.19 -0.03 4.71 16 10 N -0.53 -10.24 2.46 -177.08 -0.43 -10.68 16 11 C 0.12 2.08 5.15 -4.04 -0.02 2.06 16 12 C -0.09 -1.41 5.67 -27.88 -0.16 -1.57 16 13 C -0.07 -0.97 5.13 -104.62 -0.54 -1.51 16 14 C -0.12 -1.53 9.70 -39.58 -0.38 -1.91 16 15 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 16 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 17 C -0.12 -1.47 10.05 -39.59 -0.40 -1.86 16 18 C -0.11 -1.45 9.70 -39.58 -0.38 -1.83 16 19 C 0.57 11.19 7.56 -86.91 -0.66 10.53 16 20 S -0.69 -14.23 24.20 -107.50 -2.60 -16.83 16 21 N -0.63 -11.51 5.19 -11.40 -0.06 -11.57 16 22 C 0.14 2.35 5.94 -83.71 -0.50 1.85 16 23 C -0.07 -1.12 7.86 -39.39 -0.31 -1.43 16 24 C -0.12 -1.67 10.04 -39.61 -0.40 -2.07 16 25 C -0.12 -1.58 10.04 -39.55 -0.40 -1.97 16 26 C -0.12 -1.60 10.04 -39.62 -0.40 -2.00 16 27 C -0.13 -1.92 9.97 -39.39 -0.39 -2.31 16 28 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 29 H 0.05 1.20 8.07 -51.93 -0.42 0.78 16 30 H 0.04 0.76 6.30 -51.93 -0.33 0.43 16 31 H 0.09 1.52 8.07 -51.93 -0.42 1.10 16 32 H 0.11 1.97 6.58 -51.93 -0.34 1.63 16 33 H 0.08 1.35 8.06 -51.93 -0.42 0.93 16 34 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 35 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 40 H 0.42 7.54 6.52 -40.82 -0.27 7.27 16 41 H 0.15 2.58 6.10 -44.31 -0.27 2.31 16 42 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 43 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 44 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 45 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 389.18 15.07 5.86 5.86 Total: -1.00 -27.28 389.18 -13.92 -41.21 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -6.23 Total: 14.22 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -6.17 Total: -14.90 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.24 Total: -44.06 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 16 Polarization: -14.23 SS G_CDS: -2.60 Total: -16.83 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -27.28 -13.92 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016849589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.913 kcal (2) G-P(sol) polarization free energy of solvation -27.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds