Wall clock time and date at job start Tue Mar 31 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86790 * 120.00451 * 2 1 4 4 H 1.48498 * 109.47663 * 239.99694 * 3 2 1 5 5 H 1.48501 * 109.47372 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47200 * 119.99548 * 3 2 1 7 7 C 1.38630 * 119.99554 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00166 * 180.02562 * 7 2 1 9 9 O 1.34812 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.35662 * 117.00044 * 185.15492 * 9 7 2 11 11 C 1.39087 * 119.91087 * 354.22465 * 10 9 7 12 12 C 1.37709 * 120.08741 * 180.02562 * 11 10 9 13 13 C 1.39815 * 119.91210 * 359.97438 * 12 11 10 14 14 C 1.47361 * 120.08870 * 179.97438 * 13 12 11 15 15 N 1.29836 * 119.99870 * 180.02562 * 14 13 12 16 16 N 1.40107 * 119.99718 * 179.97438 * 15 14 13 17 17 C 1.34778 * 119.99852 * 179.97438 * 16 15 14 18 18 S 1.71194 * 119.99640 * 180.02562 * 17 16 15 19 19 N 1.34779 * 119.99804 * 0.02562 * 17 16 15 20 20 C 1.39859 * 119.99485 * 185.68599 * 19 17 16 21 21 C 1.38884 * 120.07291 * 220.64962 * 20 19 17 22 22 C 1.38116 * 119.92886 * 179.72421 * 21 20 19 23 23 C 1.38280 * 120.07187 * 0.53109 * 22 21 20 24 24 C 1.38288 * 120.14570 * 359.76611 * 23 22 21 25 25 C 1.38111 * 120.06834 * 359.95834 * 24 23 22 26 26 C 1.39814 * 119.82535 * 0.02562 * 13 12 11 27 27 C 1.37715 * 119.91202 * 359.97438 * 26 13 12 28 28 H 0.97006 * 119.99250 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.95579 * 359.97438 * 11 10 9 30 30 H 1.07998 * 120.04707 * 179.70500 * 12 11 10 31 31 H 1.08002 * 119.99822 * 359.97438 * 14 13 12 32 32 H 0.96995 * 119.99647 * 0.02562 * 16 15 14 33 33 H 0.96991 * 120.00381 * 5.68220 * 19 17 16 34 34 H 1.08006 * 120.03472 * 359.97438 * 21 20 19 35 35 H 1.08002 * 119.96167 * 180.29676 * 22 21 20 36 36 H 1.07992 * 119.93109 * 179.74572 * 23 22 21 37 37 H 1.07994 * 119.96681 * 179.97438 * 24 23 22 38 38 H 1.08004 * 120.03237 * 179.97438 * 25 24 23 39 39 H 1.08002 * 120.04464 * 180.02562 * 26 13 12 40 40 H 1.08001 * 119.95774 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 3.1036 1.6963 -1.2124 5 1 1.2849 2.7464 -0.0006 6 1 3.1035 1.6962 1.2126 7 6 2.0088 -1.2006 0.0005 8 1 3.0887 -1.2007 0.0010 9 8 1.3346 -2.3681 0.0005 10 6 2.0691 -3.5034 0.1097 11 6 3.4582 -3.4350 0.0938 12 6 4.2073 -4.5853 0.2038 13 6 3.5697 -5.8230 0.3321 14 6 4.3675 -7.0564 0.4495 15 7 3.7737 -8.2048 0.5681 16 7 4.5322 -9.3775 0.6792 17 6 3.9158 -10.5697 0.8028 18 16 4.8427 -12.0025 0.9392 19 7 2.5696 -10.6337 0.8190 20 6 1.9305 -11.8530 1.0661 21 6 0.7995 -12.2054 0.3411 22 6 0.1741 -13.4127 0.5836 23 6 0.6664 -14.2654 1.5545 24 6 1.7887 -13.9148 2.2824 25 6 2.4221 -12.7115 2.0409 26 6 2.1732 -5.8875 0.3476 27 6 1.4311 -4.7326 0.2371 28 1 -0.4849 0.8402 -0.0004 29 1 3.9499 -2.4787 -0.0057 30 1 5.2858 -4.5319 0.1867 31 1 5.4463 -7.0050 0.4362 32 1 5.5010 -9.3313 0.6679 33 1 2.0440 -9.8343 0.6594 34 1 0.4119 -11.5378 -0.4143 35 1 -0.7026 -13.6894 0.0168 36 1 0.1732 -15.2070 1.7451 37 1 2.1705 -14.5827 3.0403 38 1 3.2984 -12.4381 2.6100 39 1 1.6770 -6.8416 0.4470 40 1 0.3522 -4.7816 0.2494 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017415029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:22 Heat of formation + Delta-G solvation = 91.127511 kcal Electronic energy + Delta-G solvation = -24322.801834 eV Core-core repulsion = 20616.760851 eV Total energy + Delta-G solvation = -3706.040983 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.094 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.29211 -39.40503 -38.57690 -37.13949 -35.90304 -33.21933 -32.50965 -31.13454 -30.59595 -29.75393 -28.75466 -25.91548 -24.72067 -23.24204 -22.87400 -22.31533 -21.68623 -20.57280 -19.17186 -18.53343 -17.99114 -17.42809 -16.89706 -16.15408 -16.07329 -15.44192 -15.20482 -14.81643 -14.54632 -14.48590 -14.16998 -14.00835 -13.81375 -13.59024 -13.21551 -13.07747 -12.73202 -12.42350 -11.98800 -11.81430 -11.58876 -11.57352 -11.46465 -11.30648 -11.07458 -11.04513 -10.68394 -10.48868 -9.97513 -9.68145 -9.18166 -9.12637 -8.64037 -8.55838 -8.02401 -7.43378 -7.36439 -6.79062 -4.34412 0.48355 1.09701 1.29163 1.47249 1.65900 1.96826 2.42401 2.63295 2.69596 2.94948 2.97765 2.99682 3.65783 3.70328 4.30030 4.53778 4.68331 4.77783 4.79434 4.84412 4.93589 4.98432 5.22501 5.27836 5.36277 5.38273 5.44879 5.66255 5.82909 5.87687 5.98601 6.03971 6.13610 6.25007 6.31870 6.38223 6.45500 6.55177 6.71597 6.76804 6.89186 6.96923 7.02422 7.09672 7.43416 7.65188 7.70775 8.64776 9.28992 10.36676 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.001819 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.679240 B =15389.260320 C =16504.071446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.042 3.958 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.099 0.901 9 O -0.157 6.157 10 C 0.172 3.828 11 C -0.242 4.242 12 C -0.024 4.024 13 C -0.191 4.191 14 C 0.199 3.801 15 N -0.336 5.336 16 N -0.530 5.530 17 C 0.594 3.406 18 S -0.631 6.631 19 N -0.614 5.614 20 C 0.127 3.873 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.118 4.118 24 C -0.113 4.113 25 C -0.074 4.074 26 C -0.020 4.020 27 C -0.202 4.202 28 H 0.277 0.723 29 H 0.134 0.866 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.412 0.588 33 H 0.421 0.579 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.143 0.857 39 H 0.120 0.880 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.501 -16.407 2.028 16.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.165 4.165 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.116 0.884 9 O -0.056 6.056 10 C 0.113 3.887 11 C -0.261 4.261 12 C -0.045 4.045 13 C -0.196 4.196 14 C -0.006 4.006 15 N -0.146 5.146 16 N -0.250 5.250 17 C 0.235 3.765 18 S -0.502 6.502 19 N -0.239 5.239 20 C 0.033 3.967 21 C -0.145 4.145 22 C -0.135 4.135 23 C -0.137 4.137 24 C -0.133 4.133 25 C -0.096 4.096 26 C -0.041 4.041 27 C -0.221 4.221 28 H 0.087 0.913 29 H 0.152 0.848 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.256 0.744 33 H 0.261 0.739 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.161 0.839 39 H 0.138 0.862 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.735 -17.566 2.142 17.906 hybrid contribution 1.159 2.318 -0.344 2.614 sum 3.895 -15.248 1.798 15.840 Atomic orbital electron populations 1.70029 1.06177 1.28656 1.42991 1.25433 0.95957 0.99306 0.95796 0.85684 0.78798 0.79006 0.79506 1.19164 1.19982 1.19145 1.21454 0.92156 0.80462 1.52797 0.88386 1.83937 1.35129 1.11903 1.74618 1.19608 0.90360 0.87877 0.90807 1.21062 0.93600 0.99064 1.12382 1.20814 0.98583 0.90920 0.94160 1.17733 0.92707 0.89585 1.19560 1.24506 0.97700 0.90210 0.88152 1.74808 1.23061 0.93154 1.23534 1.46223 1.08698 1.02086 1.67948 1.22054 0.85987 0.88717 0.79750 1.93550 1.62874 1.19213 1.74522 1.42162 1.03573 1.11711 1.66435 1.17493 0.94965 0.86703 0.97492 1.20906 0.96509 0.97816 0.99224 1.20872 1.00251 0.93622 0.98713 1.21194 0.96571 0.99579 0.96378 1.20975 0.95559 0.96491 1.00247 1.21385 0.98690 0.94127 0.95389 1.20778 0.92311 0.97071 0.93914 1.20182 0.99988 0.90065 1.11896 0.91330 0.84835 0.86615 0.86674 0.74379 0.73857 0.85747 0.85636 0.85990 0.85624 0.83939 0.86160 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.58 13.67 55.48 0.76 -21.83 16 2 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 3 Si 0.95 18.35 29.55 -169.99 -5.02 13.33 16 4 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.39 -9.75 9.48 30.88 0.29 -9.46 16 8 H 0.10 2.19 5.19 -52.49 -0.27 1.92 16 9 O -0.16 -3.96 9.75 0.37 0.00 -3.96 16 10 C 0.17 3.58 6.65 -38.96 -0.26 3.32 16 11 C -0.24 -4.36 9.15 -39.46 -0.36 -4.72 16 12 C -0.02 -0.35 9.78 -39.19 -0.38 -0.73 16 13 C -0.19 -2.67 5.87 -105.01 -0.62 -3.29 16 14 C 0.20 2.23 10.75 -14.68 -0.16 2.08 16 15 N -0.34 -3.94 9.47 32.14 0.30 -3.64 16 16 N -0.53 -6.01 6.26 29.96 0.19 -5.82 16 17 C 0.59 7.66 7.74 -86.91 -0.67 6.98 16 18 S -0.63 -9.80 26.54 -107.50 -2.85 -12.65 16 19 N -0.61 -7.12 5.28 -11.41 -0.06 -7.18 16 20 C 0.13 1.46 5.93 -83.71 -0.50 0.97 16 21 C -0.12 -1.22 9.97 -39.39 -0.39 -1.62 16 22 C -0.12 -1.00 10.04 -39.61 -0.40 -1.40 16 23 C -0.12 -1.02 10.04 -39.55 -0.40 -1.42 16 24 C -0.11 -1.11 10.04 -39.61 -0.40 -1.50 16 25 C -0.07 -0.87 7.85 -39.39 -0.31 -1.18 16 26 C -0.02 -0.31 9.57 -39.18 -0.37 -0.69 16 27 C -0.20 -3.66 9.97 -39.46 -0.39 -4.06 16 28 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.13 2.39 5.62 -52.49 -0.30 2.09 16 30 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.12 0.94 8.02 -52.49 -0.42 0.52 16 32 H 0.41 4.03 8.63 -182.60 -1.58 2.46 16 33 H 0.42 4.46 7.88 -40.82 -0.32 4.13 16 34 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 35 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.14 1.84 6.18 -47.73 -0.29 1.55 16 39 H 0.12 1.60 7.55 -52.49 -0.40 1.21 16 40 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -29.44 365.90 -11.83 -41.27 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -5.25 Total: 10.71 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -5.41 Total: -15.75 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 1.19 Total: -38.46 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: 0.00 Total: -3.96 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.02 Total: 13.33 kcal Atomic # 16 Polarization: -9.80 SS G_CDS: -2.85 Total: -12.65 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.44 -11.83 -41.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017415029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.394 kcal (2) G-P(sol) polarization free energy of solvation -29.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds