Wall clock time and date at job start Tue Mar 31 2020 05:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00027 * 2 1 4 4 H 1.48499 * 109.47387 * 240.00493 * 3 2 1 5 5 H 1.48497 * 109.47065 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47190 * 120.00152 * 3 2 1 7 7 C 1.37877 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00299 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99939 * 359.97438 * 7 2 1 10 10 S 1.81002 * 109.47036 * 180.02562 * 9 7 2 11 11 C 1.76196 * 100.00052 * 180.02562 * 10 9 7 12 12 N 1.32293 * 120.51561 * 0.02562 * 11 10 9 13 13 N 1.28086 * 123.35771 * 179.97438 * 12 11 10 14 14 C 1.32220 * 123.33339 * 0.02562 * 13 12 11 15 15 C 1.48044 * 120.54062 * 180.02562 * 14 13 12 16 16 C 1.39516 * 120.10931 * 43.97641 * 15 14 13 17 17 C 1.37928 * 119.88265 * 179.79049 * 16 15 14 18 18 C 1.38582 * 120.11139 * 0.48843 * 17 16 15 19 19 F 1.35104 * 119.88677 * 179.71702 * 18 17 16 20 20 C 1.38580 * 120.22733 * 359.74331 * 18 17 16 21 21 C 1.37925 * 120.10995 * 0.02562 * 20 18 17 22 22 C 1.41749 * 118.91792 * 359.97438 * 14 13 12 23 23 C 1.39766 * 122.70359 * 180.02562 * 22 14 13 24 24 C 1.36449 * 119.40606 * 179.97438 * 23 22 14 25 25 C 1.39221 * 121.01533 * 359.97438 * 24 23 22 26 26 C 1.36437 * 121.00829 * 0.02562 * 25 24 23 27 27 C 1.39834 * 119.40169 * 359.97438 * 26 25 24 28 28 H 0.96993 * 120.00297 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.46973 * 60.00925 * 9 7 2 30 30 H 1.08994 * 109.47355 * 299.99974 * 9 7 2 31 31 H 1.08001 * 120.06133 * 0.02562 * 16 15 14 32 32 H 1.08000 * 119.94305 * 180.20401 * 17 16 15 33 33 H 1.07996 * 119.95069 * 180.02562 * 20 18 17 34 34 H 1.08008 * 120.05811 * 180.02562 * 21 20 18 35 35 H 1.08007 * 120.29863 * 359.97438 * 23 22 14 36 36 H 1.08000 * 119.49183 * 180.02562 * 24 23 22 37 37 H 1.07994 * 119.49409 * 180.28246 * 25 24 23 38 38 H 1.08005 * 120.29489 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 16 2.4273 -3.8749 -0.0005 11 6 1.3072 -5.2350 -0.0013 12 7 0.0004 -5.0291 -0.0022 13 7 -0.8618 -5.9763 -0.0033 14 6 -0.5340 -7.2572 -0.0031 15 6 -1.5827 -8.3022 -0.0050 16 6 -2.6902 -8.1807 -0.8447 17 6 -3.6624 -9.1591 -0.8457 18 6 -3.5454 -10.2564 -0.0074 19 9 -4.5032 -11.2093 -0.0080 20 6 -2.4496 -10.3793 0.8321 21 6 -1.4697 -9.4087 0.8372 22 6 0.8380 -7.6137 -0.0022 23 6 1.2731 -8.9419 -0.0025 24 6 2.6113 -9.2084 -0.0022 25 6 3.5480 -8.1784 -0.0020 26 6 3.1556 -6.8716 -0.0017 27 6 1.7915 -6.5644 -0.0021 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8896 31 1 -2.7844 -7.3239 -1.4954 32 1 -4.5185 -9.0677 -1.4978 33 1 -2.3628 -11.2364 1.4833 34 1 -0.6158 -9.5056 1.4915 35 1 0.5566 -9.7500 -0.0030 36 1 2.9491 -10.2342 -0.0028 37 1 4.6011 -8.4174 -0.0064 38 1 3.8922 -6.0816 -0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019862884.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:31 Heat of formation + Delta-G solvation = 45.293561 kcal Electronic energy + Delta-G solvation = -24829.613694 eV Core-core repulsion = 21063.550808 eV Total energy + Delta-G solvation = -3766.062886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.074 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.13707 -41.25051 -39.03458 -37.93350 -33.96483 -33.22866 -31.90087 -31.59086 -30.60696 -29.64756 -28.54368 -25.30164 -24.37815 -23.16969 -23.14928 -22.87623 -21.61359 -18.46424 -18.28495 -17.90488 -17.40283 -16.59414 -16.38077 -16.07439 -15.82258 -15.03806 -14.96803 -14.90718 -14.66123 -14.34168 -14.04879 -13.70599 -13.43749 -13.18969 -12.86068 -12.65527 -12.58137 -12.41882 -12.30008 -12.25213 -11.60079 -11.33265 -11.18784 -10.97797 -10.75033 -10.70458 -10.15546 -9.78174 -9.60521 -9.44533 -9.38332 -9.18387 -8.95773 -8.71627 -8.46376 -7.00320 -6.22249 -4.31213 0.05268 0.68905 0.85073 0.97588 1.76766 2.01407 2.92405 3.24377 3.24925 3.28746 3.30086 3.36335 3.92257 3.96881 4.02798 4.30299 4.41704 4.50016 4.52571 4.59548 4.65278 4.71220 4.95293 4.98325 5.08242 5.13779 5.16745 5.27870 5.58110 5.60354 5.64714 5.73204 5.76616 5.82952 5.93045 6.13310 6.20399 6.25631 6.31730 6.57575 6.60287 7.07467 7.19327 7.64453 7.90049 8.69473 9.05220 9.32751 10.87903 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.002813 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.613214 B = 9950.599750 C =11730.190376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.066 0.934 9 C 0.070 3.930 10 S -0.055 6.055 11 C 0.102 3.898 12 N -0.265 5.265 13 N -0.224 5.224 14 C 0.100 3.900 15 C -0.033 4.033 16 C -0.053 4.053 17 C -0.152 4.152 18 C 0.102 3.898 19 F -0.140 7.140 20 C -0.154 4.154 21 C -0.077 4.077 22 C -0.047 4.047 23 C -0.109 4.109 24 C -0.096 4.096 25 C -0.112 4.112 26 C -0.074 4.074 27 C -0.067 4.067 28 H 0.268 0.732 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.859 -23.271 -0.132 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.134 4.134 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.571 4.571 8 H 0.084 0.916 9 C -0.077 4.077 10 S 0.188 5.812 11 C -0.161 4.161 12 N -0.104 5.104 13 N -0.057 5.057 14 C -0.060 4.060 15 C -0.035 4.035 16 C -0.073 4.073 17 C -0.171 4.171 18 C 0.082 3.918 19 F -0.119 7.119 20 C -0.172 4.172 21 C -0.096 4.096 22 C -0.056 4.056 23 C -0.129 4.129 24 C -0.115 4.115 25 C -0.132 4.132 26 C -0.094 4.094 27 C -0.078 4.078 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.661 -21.744 -0.135 21.754 hybrid contribution -0.058 -0.288 0.022 0.295 sum 0.603 -22.031 -0.112 22.040 Atomic orbital electron populations 1.69965 1.06102 1.27632 1.48004 1.24943 0.94957 0.99194 0.94328 0.86421 0.79440 0.81899 0.78938 1.19849 1.20917 1.19853 1.20595 0.93199 0.88804 1.54478 0.91552 1.21404 0.93871 0.89729 1.02660 1.85504 1.13247 0.97148 1.85284 1.25760 0.97861 0.97435 0.95044 1.73372 0.98727 1.23518 1.14795 1.72618 1.28769 0.97194 1.07085 1.21170 0.90527 0.93097 1.01254 1.18249 0.94012 0.93212 0.98072 1.21183 0.91236 0.97744 0.97107 1.21117 1.01253 0.93897 1.00805 1.17835 0.87564 0.87742 0.98647 1.91504 1.62234 1.62553 1.95589 1.21010 0.94007 1.01341 1.00887 1.21155 0.98582 0.92299 0.97574 1.18545 0.92911 0.94354 0.99757 1.21076 0.96579 0.94863 1.00351 1.21062 0.92890 0.99719 0.97858 1.21021 1.00258 0.92333 0.99561 1.21064 0.94003 0.97633 0.96735 1.18449 0.94896 0.91994 1.02486 0.92207 0.92690 0.92694 0.84137 0.84247 0.84310 0.84398 0.84277 0.85188 0.85015 0.83889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 3 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.53 -14.54 9.13 -34.44 -0.31 -14.85 16 8 H 0.07 1.75 7.71 -52.48 -0.40 1.35 16 9 C 0.07 1.83 4.63 36.01 0.17 1.99 16 10 S -0.05 -1.13 20.63 -107.50 -2.22 -3.35 16 11 C 0.10 2.03 7.12 -16.12 -0.11 1.91 16 12 N -0.26 -5.80 10.27 31.85 0.33 -5.47 16 13 N -0.22 -4.39 11.24 33.61 0.38 -4.01 16 14 C 0.10 1.57 6.50 -82.34 -0.53 1.04 16 15 C -0.03 -0.42 5.40 -104.92 -0.57 -0.98 16 16 C -0.05 -0.62 9.67 -39.22 -0.38 -1.00 16 17 C -0.15 -1.51 10.01 -39.57 -0.40 -1.91 16 18 C 0.10 1.01 7.30 -39.33 -0.29 0.73 16 19 F -0.14 -1.45 17.26 2.25 0.04 -1.41 16 20 C -0.15 -1.36 10.01 -39.57 -0.40 -1.76 16 21 C -0.08 -0.75 7.66 -39.22 -0.30 -1.06 16 22 C -0.05 -0.69 5.72 -106.63 -0.61 -1.30 16 23 C -0.11 -1.15 8.52 -39.66 -0.34 -1.49 16 24 C -0.10 -0.85 9.95 -39.86 -0.40 -1.25 16 25 C -0.11 -1.09 9.95 -39.87 -0.40 -1.49 16 26 C -0.07 -0.97 9.45 -39.63 -0.37 -1.35 16 27 C -0.07 -1.10 5.76 -106.71 -0.61 -1.71 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 29 H 0.05 1.54 8.14 -51.91 -0.42 1.12 16 30 H 0.05 1.54 8.14 -51.92 -0.42 1.12 16 31 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.14 1.15 6.73 -52.48 -0.35 0.79 16 35 H 0.14 1.16 5.42 -52.48 -0.28 0.88 16 36 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.14 1.79 7.05 -52.48 -0.37 1.42 16 LS Contribution 347.58 15.07 5.24 5.24 Total: -1.00 -31.43 347.58 -9.98 -41.41 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -3.51 Total: -0.74 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -5.95 Total: -22.60 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 1.44 Total: -34.42 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -2.22 Total: -3.35 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.43 -9.98 -41.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019862884.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.705 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds