Wall clock time and date at job start Tue Mar 31 2020 06:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39583 * 120.14792 * 48.52070 * 3 2 1 5 5 C 1.37754 * 120.08077 * 179.97438 * 4 3 2 6 6 N 1.48019 * 119.80858 * 179.97438 * 5 4 3 7 7 O 1.21807 * 120.00335 * 0.02562 * 6 5 4 8 8 O 1.21806 * 120.00285 * 180.02562 * 6 5 4 9 9 C 1.39249 * 120.38068 * 0.02562 * 5 4 3 10 10 N 1.39255 * 119.85623 * 179.97438 * 9 5 4 11 11 C 1.46956 * 110.99767 * 243.80234 * 10 9 5 12 12 C 1.53052 * 109.36020 * 176.81197 * 11 10 9 13 13 N 1.46956 * 109.36723 * 58.40222 * 12 11 10 14 14 C 1.46896 * 110.99915 * 176.81349 * 13 12 11 15 15 C 1.50697 * 109.47521 * 58.97611 * 14 13 12 16 16 H 1.08002 * 120.00078 * 5.00624 * 15 14 13 17 17 C 1.37884 * 120.00034 * 185.01076 * 15 14 13 18 18 N 1.31510 * 119.99813 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99787 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47210 * 60.00212 * 19 17 15 21 21 H 1.48502 * 109.46970 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47607 * 300.00108 * 19 17 15 23 23 C 1.46964 * 110.87444 * 300.67533 * 13 12 11 24 24 C 1.46954 * 110.99769 * 119.99928 * 10 9 5 25 25 C 1.38904 * 120.28928 * 0.25029 * 9 5 4 26 26 C 1.39151 * 119.90902 * 359.47789 * 25 9 5 27 27 C 1.43205 * 120.18553 * 180.24811 * 26 25 9 28 28 N 3.55836 * 104.13591 * 228.51402 * 2 1 3 29 29 H 1.07999 * 119.95396 * 359.97438 * 4 3 2 30 30 H 1.09004 * 109.48806 * 296.77563 * 11 10 9 31 31 H 1.08999 * 109.49114 * 56.84508 * 11 10 9 32 32 H 1.08996 * 109.48958 * 298.42959 * 12 11 10 33 33 H 1.09003 * 109.50269 * 178.37623 * 12 11 10 34 34 H 1.09002 * 109.46885 * 178.97817 * 14 13 12 35 35 H 1.08998 * 109.47236 * 298.97122 * 14 13 12 36 36 H 0.97006 * 119.99821 * 180.02562 * 18 17 15 37 37 H 1.08990 * 109.49135 * 299.35241 * 23 13 12 38 38 H 1.08999 * 109.48521 * 179.28687 * 23 13 12 39 39 H 1.09002 * 109.48952 * 303.15231 * 24 10 9 40 40 H 1.09002 * 109.48854 * 63.20388 * 24 10 9 41 41 H 1.07990 * 120.04154 * 179.72694 * 25 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 -0.7985 -0.9043 5 6 4.6469 -0.7964 -0.9034 6 7 5.3846 -1.6466 -1.8646 7 8 4.7737 -2.3451 -2.6537 8 8 6.6027 -1.6479 -1.8667 9 6 5.3494 0.0001 -0.0028 10 7 6.7419 -0.0066 -0.0112 11 6 7.2735 -0.5303 1.2548 12 6 8.8006 -0.5957 1.1755 13 7 9.3321 0.7463 0.8994 14 6 10.8011 0.7391 0.8905 15 6 11.2924 -0.2232 -0.1600 16 1 10.5877 -0.7134 -0.8153 17 6 12.6418 -0.4778 -0.2845 18 7 13.5000 0.1194 0.5132 19 14 13.2508 -1.6711 -1.5862 20 1 12.8524 -1.1827 -2.9307 21 1 14.7308 -1.7691 -1.5142 22 1 12.6535 -3.0099 -1.3489 23 6 8.8004 1.2698 -0.3667 24 6 7.2733 1.3353 -0.2874 25 6 4.6672 0.7970 0.9077 26 6 3.2758 0.8085 0.9136 27 6 2.5665 1.6320 1.8461 28 7 2.0051 2.2858 2.5849 29 1 2.7313 -1.4192 -1.6055 30 1 6.9797 0.1278 2.0726 31 1 6.8754 -1.5296 1.4308 32 1 9.0944 -1.2750 0.3753 33 1 9.1992 -0.9566 2.1236 34 1 11.1679 1.7407 0.6659 35 1 11.1688 0.4283 1.8684 36 1 14.4494 -0.0595 0.4254 37 1 9.0942 0.6118 -1.1844 38 1 9.1985 2.2691 -0.5427 39 1 6.8751 1.6961 -1.2357 40 1 6.9792 2.0147 0.5127 41 1 5.2160 1.4099 1.6072 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019873475.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:28 Heat of formation + Delta-G solvation = 124.797965 kcal Electronic energy + Delta-G solvation = -29032.324464 eV Core-core repulsion = 24917.283422 eV Total energy + Delta-G solvation = -4115.041042 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.36612 -40.90005 -39.08599 -37.23951 -37.16356 -36.48462 -35.40709 -33.01000 -32.59750 -31.20609 -30.67343 -28.06827 -27.14191 -25.48450 -24.02997 -23.72719 -23.28266 -21.75000 -20.76445 -19.77765 -19.31705 -18.71221 -17.82653 -17.51973 -16.95027 -16.35900 -15.99421 -15.49224 -15.28795 -14.93187 -14.89927 -14.41418 -14.33627 -14.23371 -14.13078 -13.76598 -13.75330 -13.44818 -13.19886 -12.99882 -12.91219 -12.66405 -12.20587 -11.91919 -11.49785 -11.23066 -11.20157 -11.02326 -10.99053 -10.92603 -10.71846 -10.55692 -10.32854 -10.24357 -9.91323 -9.79313 -9.62765 -8.78798 -8.43929 -7.30454 -6.04437 -4.13240 -0.99466 -0.27550 0.74480 1.11452 1.80239 1.87011 1.87525 2.27915 2.70343 2.84498 2.93169 3.15582 3.32497 3.36827 3.41154 3.69658 3.94962 4.06334 4.42292 4.45926 4.59258 4.67331 4.82954 4.91879 5.09580 5.16476 5.24988 5.26989 5.41353 5.54501 5.63179 5.86574 6.00784 6.23293 6.40905 6.59675 6.61539 6.64578 6.67008 6.75647 6.86666 7.17539 7.48530 7.63210 7.85696 7.93728 8.14193 8.24846 8.97036 9.54721 11.01007 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.003021 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.237386 B = 9264.873423 C =10565.785012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C 0.242 3.758 3 C 0.010 3.990 4 C -0.003 4.003 5 C -0.008 4.008 6 N 0.019 4.981 7 O -0.192 6.192 8 O -0.064 6.064 9 C 0.202 3.798 10 N -0.499 5.499 11 C 0.064 3.936 12 C 0.065 3.935 13 N -0.544 5.544 14 C 0.189 3.811 15 C -0.551 4.551 16 H 0.063 0.937 17 C 0.066 3.934 18 N -0.893 5.893 19 Si 0.889 3.111 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.275 1.275 23 C 0.063 3.937 24 C 0.063 3.937 25 C -0.106 4.106 26 C 0.082 3.918 27 C 0.233 3.767 28 N -0.363 5.363 29 H 0.175 0.825 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.028 0.972 35 H 0.035 0.965 36 H 0.262 0.738 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.848 0.290 -0.388 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.048 5.048 2 C -0.075 4.075 3 C 0.004 3.996 4 C -0.025 4.025 5 C -0.093 4.093 6 N 0.545 4.455 7 O -0.394 6.394 8 O -0.300 6.300 9 C 0.104 3.896 10 N -0.221 5.221 11 C -0.061 4.061 12 C -0.064 4.064 13 N -0.269 5.269 14 C 0.064 3.936 15 C -0.590 4.590 16 H 0.081 0.919 17 C -0.137 4.137 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.201 1.201 21 H -0.215 1.215 22 H -0.201 1.201 23 C -0.066 4.066 24 C -0.062 4.062 25 C -0.129 4.129 26 C 0.075 3.925 27 C -0.084 4.084 28 N -0.037 5.037 29 H 0.193 0.807 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -21.736 1.703 1.238 21.838 hybrid contribution 1.309 -1.143 -1.277 2.157 sum -20.426 0.560 -0.039 20.434 Atomic orbital electron populations 1.81342 1.11319 1.06152 1.05988 1.25057 0.91952 0.95221 0.95249 1.15435 0.85096 1.00476 0.98643 1.20826 0.91200 0.94750 0.95677 1.21169 0.91416 1.00035 0.96658 1.43255 1.01783 1.00105 1.00393 1.94558 1.70188 1.39540 1.35095 1.94759 0.93457 1.68069 1.73676 1.18837 0.92295 0.89268 0.89182 1.60054 0.99224 1.26541 1.36291 1.22475 0.97975 0.99163 0.86469 1.21930 0.89544 0.92749 1.02199 1.62766 1.11915 1.21440 1.30774 1.19717 0.79882 0.96857 0.97188 1.21742 0.92460 1.26542 1.18277 0.91899 1.24954 0.96973 0.95919 0.95863 1.69934 1.02429 1.42785 1.37985 0.86695 0.77467 0.81806 0.82327 1.20122 1.21454 1.20073 1.21944 0.89849 1.00930 0.93879 1.22470 0.97870 0.85390 1.00475 1.22011 0.91628 0.99741 0.99540 1.15941 0.91855 0.93132 0.91553 1.25221 0.94480 0.94499 0.94174 1.81303 1.06890 1.07479 1.08057 0.80741 0.93445 0.90618 0.91981 0.90617 0.95440 0.94713 0.92786 0.92268 0.90686 0.90598 0.93424 0.81391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -3.79 18.54 41.84 0.78 -3.02 16 2 C 0.24 1.84 14.40 -22.47 -0.32 1.52 16 3 C 0.01 0.06 5.77 -106.42 -0.61 -0.56 16 4 C 0.00 -0.02 9.24 -39.26 -0.36 -0.38 16 5 C -0.01 -0.07 6.87 -79.75 -0.55 -0.61 16 6 N 0.02 0.23 4.45 34.06 0.15 0.38 16 7 O -0.19 -2.39 18.42 -29.46 -0.54 -2.93 16 8 O -0.06 -0.93 17.07 -29.46 -0.50 -1.43 16 9 C 0.20 1.66 4.70 -83.87 -0.39 1.27 16 10 N -0.50 -5.53 2.50 -170.98 -0.43 -5.96 16 11 C 0.06 0.74 5.35 -3.77 -0.02 0.72 16 12 C 0.06 1.05 5.24 -3.77 -0.02 1.03 16 13 N -0.54 -9.85 4.92 -235.91 -1.16 -11.01 16 14 C 0.19 4.39 5.14 -4.98 -0.03 4.36 16 15 C -0.55 -14.02 7.66 -34.44 -0.26 -14.29 16 16 H 0.06 1.60 5.82 -52.49 -0.31 1.29 16 17 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 19 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.06 1.00 5.32 -3.76 -0.02 0.98 16 24 C 0.06 0.72 5.31 -3.77 -0.02 0.70 16 25 C -0.11 -0.62 8.30 -39.00 -0.32 -0.94 16 26 C 0.08 0.47 5.76 -106.58 -0.61 -0.14 16 27 C 0.23 1.81 14.40 -22.50 -0.32 1.49 16 28 N -0.36 -3.75 18.53 41.80 0.77 -2.98 16 29 H 0.18 0.77 7.58 -52.49 -0.40 0.37 16 30 H 0.05 0.48 7.40 -51.93 -0.38 0.09 16 31 H 0.08 0.78 8.13 -51.93 -0.42 0.36 16 32 H 0.06 1.18 6.61 -51.93 -0.34 0.83 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.03 0.69 8.12 -51.93 -0.42 0.27 16 35 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 37 H 0.06 1.10 6.78 -51.93 -0.35 0.75 16 38 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 39 H 0.08 0.77 8.13 -51.93 -0.42 0.34 16 40 H 0.05 0.47 7.22 -51.93 -0.38 0.09 16 41 H 0.17 0.81 7.01 -52.49 -0.37 0.44 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -30.12 363.01 -7.91 -38.03 By element: Atomic # 1 Polarization: -0.46 SS G_CDS: -4.19 Total: -4.65 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -3.97 Total: -3.20 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.85 Total: -46.99 kcal Atomic # 8 Polarization: -3.32 SS G_CDS: -1.05 Total: -4.36 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.12 -7.91 -38.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019873475.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.826 kcal (2) G-P(sol) polarization free energy of solvation -30.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds