Wall clock time and date at job start Tue Mar 31 2020 06:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39583 * 120.14792 * 48.52070 * 3 2 1 5 5 C 1.37754 * 120.08077 * 179.97438 * 4 3 2 6 6 N 1.48019 * 119.80858 * 179.97438 * 5 4 3 7 7 O 1.21807 * 120.00335 * 0.02562 * 6 5 4 8 8 O 1.21806 * 120.00285 * 180.02562 * 6 5 4 9 9 C 1.39249 * 120.38068 * 0.02562 * 5 4 3 10 10 N 1.39255 * 119.85623 * 179.97438 * 9 5 4 11 11 C 1.46956 * 110.99767 * 243.80234 * 10 9 5 12 12 C 1.53052 * 109.36020 * 176.81197 * 11 10 9 13 13 N 1.46956 * 109.36723 * 58.40222 * 12 11 10 14 14 C 1.46896 * 110.99915 * 176.81349 * 13 12 11 15 15 C 1.50697 * 109.47521 * 58.97611 * 14 13 12 16 16 H 1.08002 * 120.00078 * 5.00624 * 15 14 13 17 17 C 1.37884 * 120.00034 * 185.01076 * 15 14 13 18 18 N 1.31510 * 119.99813 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99787 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47210 * 60.00212 * 19 17 15 21 21 H 1.48502 * 109.46970 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47607 * 300.00108 * 19 17 15 23 23 C 1.46964 * 110.87444 * 300.67533 * 13 12 11 24 24 C 1.46954 * 110.99769 * 119.99928 * 10 9 5 25 25 C 1.38904 * 120.28928 * 0.25029 * 9 5 4 26 26 C 1.39151 * 119.90902 * 359.47789 * 25 9 5 27 27 C 1.43205 * 120.18553 * 180.24811 * 26 25 9 28 28 N 3.55836 * 104.13591 * 228.51402 * 2 1 3 29 29 H 1.07999 * 119.95396 * 359.97438 * 4 3 2 30 30 H 1.09004 * 109.48806 * 296.77563 * 11 10 9 31 31 H 1.08999 * 109.49114 * 56.84508 * 11 10 9 32 32 H 1.08996 * 109.48958 * 298.42959 * 12 11 10 33 33 H 1.09003 * 109.50269 * 178.37623 * 12 11 10 34 34 H 1.09002 * 109.46885 * 178.97817 * 14 13 12 35 35 H 1.08998 * 109.47236 * 298.97122 * 14 13 12 36 36 H 0.97006 * 119.99821 * 180.02562 * 18 17 15 37 37 H 1.08990 * 109.49135 * 299.35241 * 23 13 12 38 38 H 1.08999 * 109.48521 * 179.28687 * 23 13 12 39 39 H 1.09002 * 109.48952 * 303.15231 * 24 10 9 40 40 H 1.09002 * 109.48854 * 63.20388 * 24 10 9 41 41 H 1.07990 * 120.04154 * 179.72694 * 25 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 -0.7985 -0.9043 5 6 4.6469 -0.7964 -0.9034 6 7 5.3846 -1.6466 -1.8646 7 8 4.7737 -2.3451 -2.6537 8 8 6.6027 -1.6479 -1.8667 9 6 5.3494 0.0001 -0.0028 10 7 6.7419 -0.0066 -0.0112 11 6 7.2735 -0.5303 1.2548 12 6 8.8006 -0.5957 1.1755 13 7 9.3321 0.7463 0.8994 14 6 10.8011 0.7391 0.8905 15 6 11.2924 -0.2232 -0.1600 16 1 10.5877 -0.7134 -0.8153 17 6 12.6418 -0.4778 -0.2845 18 7 13.5000 0.1194 0.5132 19 14 13.2508 -1.6711 -1.5862 20 1 12.8524 -1.1827 -2.9307 21 1 14.7308 -1.7691 -1.5142 22 1 12.6535 -3.0099 -1.3489 23 6 8.8004 1.2698 -0.3667 24 6 7.2733 1.3353 -0.2874 25 6 4.6672 0.7970 0.9077 26 6 3.2758 0.8085 0.9136 27 6 2.5665 1.6320 1.8461 28 7 2.0051 2.2858 2.5849 29 1 2.7313 -1.4192 -1.6055 30 1 6.9797 0.1278 2.0726 31 1 6.8754 -1.5296 1.4308 32 1 9.0944 -1.2750 0.3753 33 1 9.1992 -0.9566 2.1236 34 1 11.1679 1.7407 0.6659 35 1 11.1688 0.4283 1.8684 36 1 14.4494 -0.0595 0.4254 37 1 9.0942 0.6118 -1.1844 38 1 9.1985 2.2691 -0.5427 39 1 6.8751 1.6961 -1.2357 40 1 6.9792 2.0147 0.5127 41 1 5.2160 1.4099 1.6072 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019873475.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:28 Heat of formation + Delta-G solvation = 106.994962 kcal Electronic energy + Delta-G solvation = -29033.096460 eV Core-core repulsion = 24917.283422 eV Total energy + Delta-G solvation = -4115.813038 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.17287 -41.65895 -40.03969 -38.10123 -37.89550 -37.39331 -36.56173 -34.47811 -33.63097 -32.13531 -31.79175 -29.44347 -28.05119 -26.91101 -24.91747 -24.62421 -24.43429 -23.23262 -21.43159 -20.76350 -20.34890 -19.54743 -18.68274 -18.34313 -18.31370 -17.50395 -16.98747 -16.51376 -16.27643 -15.80177 -15.77282 -15.71658 -15.57239 -15.09423 -14.82638 -14.76058 -14.62734 -14.42848 -14.15803 -14.07592 -13.68238 -13.63893 -13.46357 -13.22849 -12.87356 -12.75165 -12.45537 -12.41726 -12.19662 -12.10710 -12.06620 -11.96556 -11.75725 -11.72033 -11.36885 -10.91697 -10.52541 -10.44131 -9.61098 -8.94763 -8.08349 -6.25859 -1.68399 -0.83828 -0.07694 0.36336 1.18136 1.20157 1.25622 1.44493 1.44520 1.52821 1.66941 2.08393 2.17451 2.34742 2.44342 2.44820 3.15317 3.17550 3.32739 3.40333 3.46771 3.80507 3.97077 4.15311 4.22486 4.25545 4.33682 4.36232 4.54328 4.55377 4.72184 4.82640 4.86964 5.10770 5.22582 5.30728 5.36774 5.39887 5.44895 5.77348 5.82128 5.96920 5.99153 6.05127 6.12946 6.32980 6.59866 6.63274 6.95812 7.45665 8.93471 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.003021 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.237386 B = 9264.873423 C =10565.785012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.264 3.736 3 C 0.029 3.971 4 C 0.020 3.980 5 C -0.009 4.009 6 N 0.025 4.975 7 O -0.181 6.181 8 O -0.132 6.132 9 C 0.200 3.800 10 N -0.517 5.517 11 C 0.076 3.924 12 C 0.065 3.935 13 N -0.536 5.536 14 C 0.202 3.798 15 C -0.550 4.550 16 H 0.059 0.941 17 C 0.014 3.986 18 N -0.927 5.927 19 Si 0.949 3.051 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.271 1.271 23 C 0.062 3.938 24 C 0.075 3.925 25 C -0.083 4.083 26 C 0.102 3.898 27 C 0.256 3.744 28 N -0.404 5.404 29 H 0.194 0.806 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.027 0.973 33 H 0.068 0.932 34 H 0.004 0.996 35 H 0.008 0.992 36 H 0.263 0.737 37 H 0.025 0.975 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.496 0.292 -0.485 21.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.051 4.051 3 C 0.022 3.978 4 C -0.001 4.001 5 C -0.094 4.094 6 N 0.544 4.456 7 O -0.391 6.391 8 O -0.353 6.353 9 C 0.103 3.897 10 N -0.239 5.239 11 C -0.049 4.049 12 C -0.064 4.064 13 N -0.260 5.260 14 C 0.075 3.925 15 C -0.589 4.589 16 H 0.077 0.923 17 C -0.185 4.185 18 N -0.568 5.568 19 Si 0.775 3.225 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.066 4.066 24 C -0.051 4.051 25 C -0.106 4.106 26 C 0.095 3.905 27 C -0.060 4.060 28 N -0.079 5.079 29 H 0.212 0.788 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.022 0.978 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -24.304 1.723 1.157 24.393 hybrid contribution 1.964 -1.148 -1.259 2.600 sum -22.340 0.574 -0.102 22.348 Atomic orbital electron populations 1.81390 1.12678 1.07501 1.07320 1.25125 0.91983 0.94005 0.94032 1.15220 0.83987 1.00193 0.98391 1.20875 0.89905 0.94044 0.95292 1.21125 0.91888 1.00108 0.96310 1.43652 1.01622 0.99890 1.00437 1.94523 1.69850 1.39380 1.35317 1.94792 0.94669 1.70294 1.75544 1.18659 0.90699 0.90275 0.90105 1.59784 1.01242 1.26519 1.36352 1.22303 0.93963 1.00971 0.87634 1.21910 0.93401 0.90700 1.00387 1.62688 1.08610 1.22685 1.32008 1.19356 0.83434 0.94757 0.94968 1.22002 0.92430 1.26236 1.18215 0.92320 1.25716 0.97391 0.97614 0.97810 1.70045 1.02616 1.44408 1.39683 0.85747 0.76930 0.79874 0.79996 1.19692 1.21116 1.19624 1.21950 0.93655 0.99589 0.91441 1.22324 0.93910 0.86275 1.02553 1.21989 0.91290 0.98675 0.98635 1.15763 0.91580 0.92366 0.90750 1.25294 0.93560 0.93678 0.93468 1.81354 1.08175 1.08881 1.09457 0.78848 0.90767 0.89067 0.95479 0.91379 0.97755 0.97389 0.92813 0.95687 0.91061 0.88845 0.90713 0.79369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.44 18.54 19.00 0.35 -7.09 16 2 C 0.26 3.15 14.40 88.33 1.27 4.43 16 3 C 0.03 0.20 5.77 -21.03 -0.12 0.08 16 4 C 0.02 0.15 9.24 22.48 0.21 0.36 16 5 C -0.01 -0.12 6.87 36.50 0.25 0.13 16 6 N 0.02 0.55 4.45 -46.15 -0.21 0.34 16 7 O -0.18 -4.15 18.42 18.88 0.35 -3.80 16 8 O -0.13 -3.85 17.07 18.88 0.32 -3.53 16 9 C 0.20 2.55 4.70 38.37 0.18 2.73 16 10 N -0.52 -10.30 2.50 -694.87 -1.74 -12.04 16 11 C 0.08 1.59 5.35 86.31 0.46 2.05 16 12 C 0.06 2.12 5.24 86.31 0.45 2.57 16 13 N -0.54 -19.72 4.92 -900.29 -4.43 -24.15 16 14 C 0.20 9.82 5.14 85.56 0.44 10.26 16 15 C -0.55 -29.11 7.66 25.60 0.20 -28.91 16 16 H 0.06 3.11 5.82 -2.91 -0.02 3.10 16 17 C 0.01 0.76 5.46 84.66 0.46 1.22 16 18 N -0.93 -53.85 13.29 21.45 0.28 -53.57 16 19 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 C 0.06 2.00 5.32 86.31 0.46 2.46 16 24 C 0.07 1.52 5.31 86.31 0.46 1.97 16 25 C -0.08 -0.56 8.30 22.65 0.19 -0.37 16 26 C 0.10 0.71 5.76 -21.13 -0.12 0.58 16 27 C 0.26 3.05 14.40 88.34 1.27 4.33 16 28 N -0.40 -7.30 18.53 18.99 0.35 -6.95 16 29 H 0.19 0.83 7.58 -2.91 -0.02 0.80 16 30 H 0.07 1.18 7.40 -2.39 -0.02 1.17 16 31 H 0.09 1.66 8.13 -2.39 -0.02 1.64 16 32 H 0.03 1.07 6.61 -2.39 -0.02 1.06 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.00 0.23 8.12 -2.39 -0.02 0.21 16 35 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 37 H 0.02 0.97 6.78 -2.39 -0.02 0.95 16 38 H 0.07 2.29 8.12 -2.39 -0.02 2.27 16 39 H 0.09 1.62 8.13 -2.39 -0.02 1.60 16 40 H 0.07 1.15 7.22 -2.39 -0.02 1.13 16 41 H 0.19 0.70 7.01 -2.92 -0.02 0.68 16 Total: -1.00 -69.90 363.01 4.48 -65.43 By element: Atomic # 1 Polarization: -5.16 SS G_CDS: 1.11 Total: -4.05 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 6.06 Total: 3.90 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -5.38 Total: -103.46 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.67 Total: -7.33 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -69.90 4.48 -65.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019873475.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.423 kcal (2) G-P(sol) polarization free energy of solvation -69.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds