Wall clock time and date at job start Tue Mar 31 2020 06:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38314 * 119.92636 * 2 1 4 4 C 1.38086 * 120.06711 * 179.72106 * 3 2 1 5 5 C 1.38912 * 119.93096 * 359.97438 * 4 3 2 6 6 N 1.39847 * 120.07286 * 180.02562 * 5 4 3 7 7 C 1.36645 * 119.99685 * 327.91444 * 6 5 4 8 8 N 1.36539 * 119.99590 * 353.74022 * 7 6 5 9 9 N 1.32397 * 119.99808 * 173.74302 * 7 6 5 10 10 C 1.33897 * 119.99864 * 172.96898 * 9 7 6 11 11 N 1.32710 * 118.81205 * 354.29721 * 10 9 7 12 12 C 1.31935 * 122.28698 * 179.74277 * 11 10 9 13 13 C 1.50708 * 120.18157 * 180.27020 * 12 11 10 14 14 C 1.40851 * 119.64272 * 0.52280 * 12 11 10 15 15 C 1.40500 * 121.07859 * 179.72179 * 14 12 11 16 16 H 1.08001 * 120.00033 * 318.14523 * 15 14 12 17 17 C 1.39874 * 120.00029 * 138.13896 * 15 14 12 18 18 N 1.30997 * 119.99853 * 349.28252 * 17 15 14 19 19 Si 1.86792 * 120.00148 * 169.28314 * 17 15 14 20 20 H 1.48504 * 109.47390 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47208 * 120.00067 * 19 17 15 22 22 H 1.48507 * 109.47393 * 240.00015 * 19 17 15 23 23 C 1.47411 * 117.84747 * 359.74522 * 14 12 11 24 24 O 1.21762 * 121.06032 * 180.02562 * 23 14 12 25 25 N 1.35165 * 117.88337 * 0.02562 * 23 14 12 26 26 H 0.96992 * 120.01863 * 180.02562 * 25 23 14 27 27 C 1.38871 * 119.85493 * 359.97438 * 5 4 3 28 28 C 1.50702 * 120.03878 * 179.97438 * 27 5 4 29 29 C 1.38130 * 119.92880 * 0.02562 * 27 5 4 30 30 H 1.09000 * 109.47132 * 90.00158 * 1 2 3 31 31 H 1.08999 * 109.47512 * 209.99906 * 1 2 3 32 32 H 1.09006 * 109.47425 * 330.00415 * 1 2 3 33 33 H 1.07996 * 119.96193 * 359.74124 * 3 2 1 34 34 H 1.08005 * 120.02865 * 180.02562 * 4 3 2 35 35 H 0.96996 * 120.00315 * 147.91948 * 6 5 4 36 36 H 0.97006 * 119.99315 * 147.32313 * 8 7 6 37 37 H 0.96997 * 120.00846 * 327.31723 * 8 7 6 38 38 H 1.08999 * 109.46860 * 270.25142 * 13 12 11 39 39 H 1.09000 * 109.46792 * 30.24768 * 13 12 11 40 40 H 1.08993 * 109.47195 * 150.25258 * 13 12 11 41 41 H 0.96996 * 119.99715 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.47593 * 89.99579 * 28 27 5 43 43 H 1.08994 * 109.47323 * 210.00183 * 28 27 5 44 44 H 1.08998 * 109.46629 * 330.00254 * 28 27 5 45 45 H 1.07995 * 119.96219 * 179.97438 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2021 0.0058 5 6 4.2739 0.0000 0.0122 6 7 5.6723 0.0000 0.0187 7 6 6.3584 1.0009 -0.6095 8 7 5.6851 1.9293 -1.3505 9 7 7.6760 1.0705 -0.4995 10 6 8.3621 1.9624 -1.2251 11 7 7.7138 2.6856 -2.1295 12 6 8.3207 3.5868 -2.8780 13 6 7.5366 4.3861 -3.8868 14 6 9.7063 3.7941 -2.7331 15 6 10.3840 4.7416 -3.5185 16 1 10.1573 4.8324 -4.5705 17 6 11.3521 5.5675 -2.9378 18 7 11.4814 5.6091 -1.6349 19 14 12.4605 6.6110 -4.0202 20 1 12.1146 6.3851 -5.4466 21 1 12.2703 8.0455 -3.6865 22 1 13.8777 6.2326 -3.7882 23 6 10.4225 2.9842 -1.7310 24 8 11.6204 3.1158 -1.5568 25 7 9.7072 2.0910 -1.0116 26 1 10.1472 1.5423 -0.3437 27 6 3.5780 -1.2018 0.0133 28 6 4.3289 -2.5084 0.0196 29 6 2.1967 -1.1983 0.0074 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8901 0.5138 33 1 1.6552 2.1329 -0.0042 34 1 4.1160 2.1385 0.0062 35 1 6.1553 -0.7106 0.4689 36 1 6.0127 2.8410 -1.3994 37 1 4.8793 1.6772 -1.8280 38 1 7.5296 3.8597 -4.8412 39 1 6.5130 4.5123 -3.5339 40 1 8.0000 5.3643 -4.0147 41 1 12.1531 6.1815 -1.2323 42 1 4.5065 -2.8205 1.0488 43 1 3.7402 -3.2683 -0.4941 44 1 5.2833 -2.3813 -0.4913 45 1 1.6550 -2.1326 0.0078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020555632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:21 Heat of formation + Delta-G solvation = 78.739947 kcal Electronic energy + Delta-G solvation = -29002.610655 eV Core-core repulsion = 25021.405482 eV Total energy + Delta-G solvation = -3981.205173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.46779 -39.53998 -37.94567 -36.09002 -34.66593 -34.13562 -32.88011 -32.50395 -31.62977 -30.90506 -29.41148 -27.61236 -27.44879 -26.41044 -24.57065 -22.91912 -22.20588 -20.86982 -20.60243 -20.14884 -18.23579 -17.93235 -17.11661 -16.52058 -16.17712 -15.93340 -15.55343 -15.08110 -14.86966 -14.79753 -14.26554 -14.10087 -13.94736 -13.50974 -13.39724 -13.37364 -13.05653 -12.89262 -12.75926 -12.29338 -12.22667 -12.00454 -11.91609 -11.59645 -11.47298 -11.29450 -11.24527 -11.22203 -11.09062 -10.78251 -10.34204 -9.84715 -9.40633 -9.24683 -8.97311 -8.89104 -8.64979 -8.44757 -7.92579 -7.80380 -6.88825 -6.41909 -4.10449 1.08504 1.21834 1.92721 2.91884 2.98225 3.11073 3.15287 3.23242 3.56508 3.92438 3.99877 4.25394 4.54240 4.57404 4.66218 4.77410 4.79746 5.06363 5.08547 5.27550 5.37166 5.41344 5.45847 5.51213 5.58128 5.65938 5.72567 5.84197 5.90924 5.98574 6.16156 6.24537 6.34045 6.47091 6.58703 6.61856 6.71713 6.85157 6.98912 7.09092 7.32325 7.38899 7.54520 7.63347 7.99790 8.05650 8.19879 8.47523 8.63270 8.72665 9.08543 9.64774 9.65391 10.20703 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024056 B = 0.002443 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.681803 B =11456.438975 C =12216.924179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.114 4.114 3 C -0.095 4.095 4 C -0.153 4.153 5 C 0.167 3.833 6 N -0.650 5.650 7 C 0.634 3.366 8 N -0.849 5.849 9 N -0.600 5.600 10 C 0.430 3.570 11 N -0.521 5.521 12 C -0.059 4.059 13 C -0.051 4.051 14 C -0.009 4.009 15 C -0.406 4.406 16 H 0.089 0.911 17 C 0.070 3.930 18 N -0.752 5.752 19 Si 0.915 3.085 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.272 1.272 23 C 0.524 3.476 24 O -0.532 6.532 25 N -0.627 5.627 26 H 0.393 0.607 27 C -0.119 4.119 28 C -0.115 4.115 29 C -0.093 4.093 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.123 0.877 34 H 0.141 0.859 35 H 0.421 0.579 36 H 0.424 0.576 37 H 0.384 0.616 38 H 0.038 0.962 39 H 0.040 0.960 40 H 0.063 0.937 41 H 0.282 0.718 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.590 -10.058 3.725 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.116 4.116 3 C -0.114 4.114 4 C -0.175 4.175 5 C 0.070 3.930 6 N -0.282 5.282 7 C 0.271 3.729 8 N -0.415 5.415 9 N -0.342 5.342 10 C 0.079 3.921 11 N -0.249 5.249 12 C -0.184 4.184 13 C -0.108 4.108 14 C -0.018 4.018 15 C -0.435 4.435 16 H 0.107 0.893 17 C -0.152 4.152 18 N -0.374 5.374 19 Si 0.739 3.261 20 H -0.183 1.183 21 H -0.200 1.200 22 H -0.197 1.197 23 C 0.319 3.681 24 O -0.409 6.409 25 N -0.273 5.273 26 H 0.228 0.772 27 C -0.123 4.123 28 C -0.172 4.172 29 C -0.111 4.111 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.141 0.859 34 H 0.158 0.842 35 H 0.260 0.740 36 H 0.270 0.730 37 H 0.214 0.786 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.867 -10.010 4.089 21.746 hybrid contribution 1.285 0.628 -0.433 1.494 sum -17.582 -9.382 3.657 20.261 Atomic orbital electron populations 1.20726 0.91372 1.02471 1.02086 1.19822 0.95969 0.93094 1.02682 1.20888 0.93439 0.97567 0.99532 1.21393 0.94422 0.97753 1.03919 1.17534 0.82118 0.93560 0.99821 1.41401 1.03016 1.27365 1.56427 1.18175 0.85772 0.83533 0.85392 1.43753 1.31632 1.13453 1.52647 1.68090 1.02777 1.29056 1.34241 1.18633 0.81983 0.96762 0.94754 1.67434 1.36635 1.11296 1.09514 1.20543 0.90291 1.02688 1.04845 1.19986 0.97147 0.98447 0.95263 1.20106 0.91720 0.95947 0.94049 1.19143 1.15565 1.12388 0.96446 0.89316 1.25959 0.96589 0.97464 0.95188 1.69777 1.27669 1.28714 1.11215 0.86148 0.80101 0.78919 0.80884 1.18319 1.19962 1.19714 1.19386 0.87089 0.79433 0.82226 1.90714 1.14307 1.67474 1.68366 1.44041 1.07714 1.38241 1.37296 0.77182 1.19604 0.93868 0.93847 1.04946 1.20724 1.00289 0.93866 1.02303 1.20685 0.92567 0.97592 1.00293 0.91468 0.91872 0.91743 0.85871 0.84164 0.73994 0.73005 0.78573 0.94350 0.94083 0.91835 0.90699 0.91217 0.91298 0.91360 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.01 36.00 0.36 -0.31 16 2 C -0.11 -0.97 5.88 -104.59 -0.62 -1.59 16 3 C -0.10 -0.87 9.69 -39.61 -0.38 -1.26 16 4 C -0.15 -1.63 7.82 -39.39 -0.31 -1.94 16 5 C 0.17 1.83 6.12 -83.72 -0.51 1.32 16 6 N -0.65 -7.91 4.89 -11.19 -0.05 -7.97 16 7 C 0.63 10.00 8.25 -320.02 -2.64 7.36 16 8 N -0.85 -12.50 5.31 30.14 0.16 -12.34 16 9 N -0.60 -11.53 10.55 -14.54 -0.15 -11.69 16 10 C 0.43 9.72 8.29 -322.99 -2.68 7.04 16 11 N -0.52 -11.61 6.09 -9.70 -0.06 -11.67 16 12 C -0.06 -1.42 6.89 -81.56 -0.56 -1.98 16 13 C -0.05 -1.03 9.73 36.01 0.35 -0.68 16 14 C -0.01 -0.24 5.49 -104.32 -0.57 -0.81 16 15 C -0.41 -10.82 7.63 -38.12 -0.29 -11.11 16 16 H 0.09 2.22 7.63 -52.49 -0.40 1.82 16 17 C 0.07 1.85 4.88 -17.30 -0.08 1.76 16 18 N -0.75 -20.88 11.03 55.55 0.61 -20.27 16 19 Si 0.92 19.51 29.57 -169.99 -5.03 14.48 16 20 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 C 0.52 14.53 7.42 -12.35 -0.09 14.44 16 24 O -0.53 -16.07 15.27 5.13 0.08 -15.99 16 25 N -0.63 -15.10 5.34 -14.07 -0.08 -15.17 16 26 H 0.39 8.68 8.91 -40.82 -0.36 8.31 16 27 C -0.12 -1.12 5.90 -104.43 -0.62 -1.74 16 28 C -0.12 -0.87 9.46 36.01 0.34 -0.53 16 29 C -0.09 -0.79 9.35 -39.61 -0.37 -1.16 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 32 H 0.06 0.35 8.08 -51.93 -0.42 -0.06 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.14 1.58 6.15 -52.48 -0.32 1.26 16 35 H 0.42 4.62 7.84 -40.82 -0.32 4.30 16 36 H 0.42 7.14 6.35 -40.82 -0.26 6.88 16 37 H 0.38 4.89 7.12 -40.82 -0.29 4.60 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.30 7.13 -51.93 -0.37 0.93 16 41 H 0.28 7.22 8.30 -40.82 -0.34 6.88 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 44 H 0.07 0.56 7.13 -51.93 -0.37 0.19 16 45 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 371.66 15.07 5.60 5.60 Total: -1.00 -32.09 371.66 -13.22 -45.31 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -5.63 Total: 20.90 kcal Atomic # 6 Polarization: 17.48 SS G_CDS: -8.67 Total: 8.81 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: 0.43 Total: -79.11 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.08 Total: -15.99 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.09 -13.22 -45.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020555632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.048 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds