Wall clock time and date at job start Tue Mar 31 2020 06:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86795 * 120.00224 * 2 1 4 4 H 1.48499 * 109.47336 * 274.81349 * 3 2 1 5 5 H 1.48504 * 109.46770 * 34.81217 * 3 2 1 6 6 H 1.48503 * 109.47498 * 154.80912 * 3 2 1 7 7 C 1.39871 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99796 * 162.12170 * 7 2 1 9 9 C 1.41132 * 119.99846 * 342.12241 * 7 2 1 10 10 C 1.40890 * 120.15558 * 155.18493 * 9 7 2 11 11 C 1.36339 * 119.83785 * 180.02562 * 10 9 7 12 12 C 1.39567 * 120.16128 * 0.02562 * 11 10 9 13 13 N 1.38858 * 119.84129 * 179.97438 * 12 11 10 14 14 C 1.46502 * 119.99701 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.46924 * 180.13652 * 14 13 12 16 16 C 1.50703 * 110.45931 * 294.87438 * 15 14 13 17 17 C 1.38242 * 119.97149 * 356.31164 * 16 15 14 18 18 C 1.38200 * 120.02573 * 180.02562 * 17 16 15 19 19 C 1.38464 * 119.97264 * 359.97438 * 18 17 16 20 20 F 1.35098 * 120.02426 * 179.97438 * 19 18 17 21 21 C 1.38456 * 119.94848 * 0.25585 * 19 18 17 22 22 C 1.38207 * 119.97275 * 359.51204 * 21 19 18 23 23 C 1.54511 * 110.51181 * 172.26625 * 15 14 13 24 24 C 1.54480 * 104.06306 * 241.21878 * 23 15 14 25 25 O 1.44425 * 104.80101 * 23.98128 * 24 23 15 26 26 C 1.44645 * 105.37052 * 319.55996 * 25 24 23 27 27 C 1.39565 * 120.31413 * 0.24863 * 12 11 10 28 28 C 1.36347 * 120.16288 * 359.48493 * 27 12 11 29 29 H 0.96996 * 119.99747 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.07630 * 0.04404 * 10 9 7 31 31 H 1.08003 * 119.91583 * 179.97438 * 11 10 9 32 32 H 0.96997 * 119.99906 * 359.97438 * 13 12 11 33 33 H 1.09003 * 109.46818 * 60.14357 * 14 13 12 34 34 H 1.08996 * 109.47549 * 300.14055 * 14 13 12 35 35 H 1.08003 * 119.99090 * 359.97438 * 17 16 15 36 36 H 1.08003 * 120.01657 * 179.97438 * 18 17 16 37 37 H 1.07998 * 120.01617 * 179.74568 * 21 19 18 38 38 H 1.07994 * 119.98312 * 180.21035 * 22 21 19 39 39 H 1.09001 * 110.50596 * 359.86650 * 23 15 14 40 40 H 1.08999 * 110.50714 * 122.57633 * 23 15 14 41 41 H 1.08996 * 110.37170 * 142.80945 * 24 23 15 42 42 H 1.09000 * 110.37404 * 265.14733 * 24 23 15 43 43 H 1.08992 * 110.34388 * 281.59923 * 26 25 24 44 44 H 1.09002 * 110.50928 * 159.18650 * 26 25 24 45 45 H 1.08001 * 119.91744 * 179.72921 * 27 12 11 46 46 H 1.07990 * 120.08030 * 180.23501 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3889 2.1051 -1.3951 5 1 1.4951 2.6211 0.7993 6 1 3.5878 1.4129 0.5959 7 6 2.0084 -1.2113 -0.0005 8 1 3.0493 -1.2338 -0.2877 9 6 1.3538 -2.4042 0.3741 10 6 1.8240 -3.6469 -0.0946 11 6 1.1864 -4.7952 0.2710 12 6 0.0701 -4.7417 1.1070 13 7 -0.5746 -5.9153 1.4748 14 6 -1.7463 -5.8632 2.3526 15 6 -2.2594 -7.2827 2.6031 16 6 -2.7658 -7.8935 1.3219 17 6 -2.7903 -7.1427 0.1613 18 6 -3.2550 -7.7016 -1.0141 19 6 -3.6957 -9.0141 -1.0292 20 9 -4.1506 -9.5613 -2.1776 21 6 -3.6751 -9.7636 0.1348 22 6 -3.2055 -9.2040 1.3081 23 6 -3.3714 -7.2750 3.6758 24 6 -2.8012 -8.1504 4.8138 25 8 -1.3682 -8.0870 4.6454 26 6 -1.1463 -8.1599 3.2180 27 6 -0.4047 -3.5139 1.5705 28 6 0.2262 -2.3579 1.2175 29 1 -0.4849 0.8400 -0.0004 30 1 2.6877 -3.6896 -0.7416 31 1 1.5455 -5.7484 -0.0878 32 1 -0.2491 -6.7695 1.1505 33 1 -2.5297 -5.2722 1.8782 34 1 -1.4693 -5.4042 3.3016 35 1 -2.4470 -6.1188 0.1734 36 1 -3.2745 -7.1148 -1.9206 37 1 -4.0224 -10.7861 0.1252 38 1 -3.1862 -9.7895 2.2153 39 1 -3.5539 -6.2602 4.0294 40 1 -4.2874 -7.7130 3.2794 41 1 -3.0875 -7.7450 5.7842 42 1 -3.1501 -9.1782 4.7131 43 1 -1.2399 -9.1892 2.8720 44 1 -0.1645 -7.7608 2.9632 45 1 -1.2717 -3.4796 2.2136 46 1 -0.1401 -1.4088 1.5799 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020818688.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:57 Heat of formation + Delta-G solvation = -36.890592 kcal Electronic energy + Delta-G solvation = -29109.372888 eV Core-core repulsion = 25070.940886 eV Total energy + Delta-G solvation = -4038.432002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.02522 -40.84610 -38.44333 -37.90048 -35.51060 -33.71420 -32.44798 -31.27168 -30.20244 -29.47770 -29.17933 -28.03772 -25.97281 -24.14816 -23.00969 -22.92617 -22.53543 -21.13642 -20.14862 -19.46880 -18.01117 -17.22112 -16.91140 -16.71611 -16.19828 -15.73802 -15.71051 -15.29772 -15.14282 -14.96357 -14.61400 -14.35079 -13.89807 -13.73822 -13.47891 -13.10605 -12.94291 -12.79409 -12.72421 -12.56184 -12.26598 -11.93950 -11.82935 -11.66785 -11.50278 -11.44983 -11.19367 -11.03980 -10.99840 -10.84076 -10.64199 -10.46827 -9.91180 -9.71861 -9.30570 -9.28938 -9.21094 -8.70431 -8.54664 -7.50838 -6.65845 -6.41780 -4.04928 0.92981 1.07323 2.90189 3.08931 3.14409 3.19390 3.33604 3.35865 3.74196 4.04547 4.09643 4.10600 4.35199 4.45188 4.60379 4.68687 4.72205 4.75228 4.76045 4.93401 5.00117 5.12455 5.29166 5.43821 5.48257 5.55914 5.66556 5.73639 5.76000 5.78698 5.82895 5.92190 5.94165 6.03659 6.19591 6.25172 6.30637 6.37338 6.58151 6.73260 6.89329 6.92534 7.18688 7.34195 7.52567 7.67204 7.81763 8.14087 8.26461 8.46214 8.65160 8.77380 9.04962 9.13536 10.35733 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013033 B = 0.002788 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.826102 B =10039.174004 C =11345.957172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.075 3.925 3 Si 0.901 3.099 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.467 4.467 8 H 0.072 0.928 9 C 0.077 3.923 10 C -0.187 4.187 11 C -0.156 4.156 12 C 0.089 3.911 13 N -0.760 5.760 14 C 0.152 3.848 15 C -0.059 4.059 16 C -0.082 4.082 17 C -0.074 4.074 18 C -0.150 4.150 19 C 0.093 3.907 20 F -0.143 7.143 21 C -0.157 4.157 22 C -0.089 4.089 23 C -0.141 4.141 24 C 0.044 3.956 25 O -0.369 6.369 26 C 0.055 3.945 27 C -0.161 4.161 28 C -0.125 4.125 29 H 0.276 0.724 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.384 0.616 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.152 0.848 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.791 -16.496 5.096 19.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.498 4.498 8 H 0.090 0.910 9 C 0.074 3.926 10 C -0.208 4.208 11 C -0.178 4.178 12 C -0.007 4.007 13 N -0.397 5.397 14 C 0.027 3.973 15 C -0.060 4.060 16 C -0.083 4.083 17 C -0.092 4.092 18 C -0.169 4.169 19 C 0.074 3.926 20 F -0.122 7.122 21 C -0.176 4.176 22 C -0.107 4.107 23 C -0.179 4.179 24 C -0.033 4.033 25 O -0.288 6.288 26 C -0.021 4.021 27 C -0.183 4.183 28 C -0.145 4.145 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.217 0.783 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.169 0.831 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.111 0.889 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.121 0.879 45 H 0.105 0.895 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.972 -16.222 5.320 19.772 hybrid contribution 0.115 0.349 -0.699 0.790 sum -9.857 -15.873 4.621 19.248 Atomic orbital electron populations 1.69853 1.07355 1.28591 1.37623 1.25790 0.94651 1.00880 0.92682 0.86420 0.80782 0.81352 0.78808 1.19867 1.20280 1.18662 1.19374 0.97903 0.91391 1.41123 0.90974 1.17491 0.92391 0.91963 0.90788 1.20544 1.02704 0.92650 1.04854 1.19794 0.97835 0.96999 1.03134 1.17280 0.95817 0.85444 1.02177 1.43954 1.32749 1.06011 1.57018 1.21027 0.88915 0.92654 0.94738 1.21105 0.95593 0.96683 0.92610 1.19680 1.00154 0.93894 0.94551 1.21433 0.95522 1.01532 0.90667 1.21267 1.01491 0.93798 1.00303 1.17790 0.99993 0.92685 0.82105 1.91491 1.86719 1.85912 1.48041 1.21038 1.03920 1.00727 0.91881 1.20795 0.97872 0.94607 0.97462 1.23080 0.97924 1.02206 0.94733 1.23431 0.81676 0.98813 0.99345 1.89203 1.21928 1.94897 1.22739 1.23703 0.99475 0.98226 0.80739 1.20076 1.01452 0.91924 1.04859 1.20926 0.98171 0.96467 0.98963 0.91350 0.89126 0.89694 0.78294 0.92770 0.92378 0.83089 0.84616 0.84973 0.85384 0.89643 0.89933 0.88925 0.92437 0.91986 0.87890 0.89484 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.17 10.97 55.54 0.61 -20.56 16 2 C 0.08 1.92 5.13 -17.33 -0.09 1.83 16 3 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.47 -12.57 9.03 -37.87 -0.34 -12.92 16 8 H 0.07 1.88 7.91 -52.49 -0.41 1.47 16 9 C 0.08 2.04 5.57 -106.79 -0.60 1.44 16 10 C -0.19 -4.55 9.74 -39.26 -0.38 -4.93 16 11 C -0.16 -3.37 9.82 -39.77 -0.39 -3.76 16 12 C 0.09 1.82 6.67 -83.69 -0.56 1.27 16 13 N -0.76 -11.89 3.60 -58.50 -0.21 -12.10 16 14 C 0.15 2.04 2.91 -4.04 -0.01 2.03 16 15 C -0.06 -0.62 0.60 -154.09 -0.09 -0.71 16 16 C -0.08 -0.86 4.49 -104.62 -0.47 -1.33 16 17 C -0.07 -0.88 8.43 -39.59 -0.33 -1.21 16 18 C -0.15 -1.76 10.03 -39.51 -0.40 -2.15 16 19 C 0.09 1.06 7.30 -39.42 -0.29 0.77 16 20 F -0.14 -1.73 17.27 2.25 0.04 -1.69 16 21 C -0.16 -1.50 10.03 -39.51 -0.40 -1.89 16 22 C -0.09 -0.81 8.24 -39.59 -0.33 -1.13 16 23 C -0.14 -1.23 6.18 -25.16 -0.16 -1.39 16 24 C 0.04 0.38 7.64 37.93 0.29 0.67 16 25 O -0.37 -4.43 11.65 -35.23 -0.41 -4.84 16 26 C 0.06 0.60 6.34 37.94 0.24 0.84 16 27 C -0.16 -3.61 9.23 -39.77 -0.37 -3.98 16 28 C -0.13 -3.21 8.63 -39.26 -0.34 -3.55 16 29 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 30 H 0.09 2.10 8.06 -52.48 -0.42 1.67 16 31 H 0.08 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.38 5.52 7.17 -40.82 -0.29 5.22 16 33 H 0.05 0.76 6.85 -51.93 -0.36 0.40 16 34 H 0.06 0.86 7.93 -51.93 -0.41 0.44 16 35 H 0.15 2.07 5.40 -52.48 -0.28 1.79 16 36 H 0.14 1.51 8.06 -52.48 -0.42 1.08 16 37 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.13 0.91 7.53 -52.49 -0.40 0.52 16 39 H 0.08 0.75 7.73 -51.93 -0.40 0.35 16 40 H 0.08 0.63 7.44 -51.93 -0.39 0.24 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.58 6.67 -51.93 -0.35 0.24 16 44 H 0.10 1.25 6.71 -51.93 -0.35 0.90 16 45 H 0.09 1.77 6.68 -52.49 -0.35 1.42 16 46 H 0.12 3.14 6.17 -52.49 -0.32 2.81 16 LS Contribution 371.41 15.07 5.60 5.60 Total: -1.00 -28.16 371.41 -10.39 -38.55 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -5.98 Total: 11.06 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: -5.00 Total: -30.10 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.40 Total: -32.66 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.41 Total: -4.84 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.16 -10.39 -38.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020818688.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.659 kcal (2) G-P(sol) polarization free energy of solvation -28.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds