Wall clock time and date at job start Tue Mar 31 2020 06:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86794 * 120.00062 * 2 1 4 4 H 1.48502 * 109.47440 * 270.00428 * 3 2 1 5 5 H 1.48503 * 109.47279 * 30.00518 * 3 2 1 6 6 H 1.48501 * 109.46955 * 150.00459 * 3 2 1 7 7 C 1.39861 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00290 * 163.38640 * 7 2 1 9 9 C 1.41142 * 119.99985 * 343.38835 * 7 2 1 10 10 C 1.40880 * 120.15630 * 154.55210 * 9 7 2 11 11 C 1.36343 * 119.83429 * 179.97438 * 10 9 7 12 12 C 1.39563 * 120.16235 * 359.97018 * 11 10 9 13 13 N 1.38857 * 119.84277 * 180.02562 * 12 11 10 14 14 C 1.46500 * 120.00028 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.47172 * 184.79734 * 14 13 12 16 16 C 1.50697 * 110.56351 * 59.01117 * 15 14 13 17 17 C 1.38237 * 119.97613 * 69.84596 * 16 15 14 18 18 C 1.38202 * 120.02972 * 179.76750 * 17 16 15 19 19 C 1.38459 * 119.96796 * 0.50154 * 18 17 16 20 20 F 1.35103 * 120.02432 * 179.76898 * 19 18 17 21 21 C 1.38461 * 119.95286 * 359.75233 * 19 18 17 22 22 C 1.38201 * 119.96973 * 359.97438 * 21 19 18 23 23 C 1.54510 * 110.51260 * 181.69072 * 15 14 13 24 24 C 1.54484 * 104.18429 * 118.71175 * 23 15 14 25 25 O 1.44425 * 104.80153 * 335.95630 * 24 23 15 26 26 C 1.44417 * 105.27836 * 40.51094 * 25 24 23 27 27 C 1.39567 * 120.31558 * 0.28335 * 12 11 10 28 28 C 1.36335 * 120.15947 * 359.47879 * 27 12 11 29 29 H 0.97008 * 119.99879 * 359.97438 * 1 2 3 30 30 H 1.07990 * 120.08480 * 359.95089 * 10 9 7 31 31 H 1.08000 * 119.91837 * 180.02562 * 11 10 9 32 32 H 0.97003 * 120.00323 * 0.02562 * 13 12 11 33 33 H 1.08995 * 109.47253 * 64.80089 * 14 13 12 34 34 H 1.08997 * 109.47219 * 304.79528 * 14 13 12 35 35 H 1.08004 * 119.98718 * 0.02562 * 17 16 15 36 36 H 1.08000 * 120.01566 * 180.25545 * 18 17 16 37 37 H 1.07999 * 120.01241 * 180.02562 * 21 19 18 38 38 H 1.08002 * 119.98048 * 180.02562 * 22 21 19 39 39 H 1.08998 * 110.50774 * 0.02562 * 23 15 14 40 40 H 1.09001 * 110.51105 * 237.42869 * 23 15 14 41 41 H 1.08999 * 110.36919 * 94.78610 * 24 23 15 42 42 H 1.09002 * 110.37086 * 217.00959 * 24 23 15 43 43 H 1.09001 * 110.37389 * 78.32105 * 26 25 24 44 44 H 1.09001 * 110.36999 * 200.65831 * 26 25 24 45 45 H 1.08004 * 119.91931 * 179.72608 * 27 12 11 46 46 H 1.08003 * 120.08465 * 180.28144 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0465 -1.4001 5 1 1.4406 2.6526 0.7002 6 1 3.5406 1.4400 0.7000 7 6 2.0083 -1.2112 -0.0005 8 1 3.0545 -1.2307 -0.2679 9 6 1.3468 -2.4082 0.3484 10 6 1.8181 -3.6444 -0.1358 11 6 1.1744 -4.7967 0.2058 12 6 0.0514 -4.7537 1.0335 13 7 -0.5988 -5.9313 1.3776 14 6 -1.7782 -5.8901 2.2457 15 6 -2.2270 -7.3177 2.5645 16 6 -1.1205 -8.0807 3.2459 17 6 -0.7504 -7.7546 4.5373 18 6 0.2610 -8.4568 5.1651 19 6 0.9107 -9.4803 4.4962 20 9 1.9027 -10.1644 5.1072 21 6 0.5427 -9.8026 3.2009 22 6 -0.4728 -9.1027 2.5773 23 6 -3.4962 -7.3023 3.4454 24 6 -4.5604 -8.0234 2.5887 25 8 -4.1091 -7.8615 1.2264 26 6 -2.6777 -8.0464 1.2752 27 6 -0.4243 -3.5321 1.5125 28 6 0.2123 -2.3724 1.1830 29 1 -0.4850 0.8401 0.0004 30 1 2.6870 -3.6792 -0.7762 31 1 1.5348 -5.7451 -0.1642 32 1 -0.2722 -6.7813 1.0433 33 1 -2.5845 -5.3606 1.7382 34 1 -1.5297 -5.3721 3.1719 35 1 -1.2546 -6.9536 5.0575 36 1 0.5472 -8.2046 6.1755 37 1 1.0485 -10.6010 2.6784 38 1 -0.7602 -9.3542 1.5671 39 1 -3.8042 -6.2776 3.6534 40 1 -3.3226 -7.8444 4.3750 41 1 -4.6054 -9.0806 2.8504 42 1 -5.5365 -7.5577 2.7249 43 1 -2.4339 -9.1071 1.3354 44 1 -2.2070 -7.5971 0.4008 45 1 -1.2965 -3.5059 2.1490 46 1 -0.1542 -1.4283 1.5581 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020818692.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:01 Heat of formation + Delta-G solvation = -38.857116 kcal Electronic energy + Delta-G solvation = -29050.978403 eV Core-core repulsion = 25012.461126 eV Total energy + Delta-G solvation = -4038.517277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.04239 -40.81711 -38.48163 -37.86131 -35.42315 -33.71325 -32.37902 -31.56009 -30.19162 -29.45792 -29.19534 -27.97166 -25.91477 -24.30514 -23.26210 -23.06277 -22.10436 -21.14695 -20.13577 -19.49363 -18.05966 -17.19458 -16.86976 -16.68605 -16.36718 -15.74079 -15.69855 -15.50937 -15.08826 -14.93501 -14.52932 -14.11026 -13.89332 -13.75612 -13.59151 -13.41638 -13.07806 -12.93155 -12.62720 -12.54910 -12.16398 -11.93335 -11.81103 -11.68917 -11.56496 -11.37405 -11.18875 -11.02536 -10.99202 -10.79380 -10.74240 -10.44770 -9.88539 -9.69006 -9.31517 -9.27585 -9.21761 -8.72988 -8.52778 -7.48378 -6.61598 -6.37894 -4.02742 0.92844 1.01797 2.92793 3.11147 3.15537 3.20357 3.34322 3.36562 3.70923 3.98458 4.06619 4.07150 4.42464 4.45250 4.53742 4.62002 4.67114 4.74350 4.78973 4.94518 5.00626 5.08438 5.21314 5.41192 5.49618 5.51670 5.64854 5.66174 5.71821 5.75720 5.82978 5.89174 5.94314 5.97268 6.09285 6.27055 6.27739 6.32664 6.57791 6.67856 6.92364 6.94374 7.21233 7.36941 7.55270 7.69769 7.84490 8.16426 8.29340 8.49273 8.68719 8.80148 9.07614 9.16171 10.39555 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012460 B = 0.002816 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.572632 B = 9939.510396 C =11268.779314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.467 4.467 8 H 0.072 0.928 9 C 0.075 3.925 10 C -0.186 4.186 11 C -0.158 4.158 12 C 0.095 3.905 13 N -0.758 5.758 14 C 0.160 3.840 15 C -0.061 4.061 16 C -0.066 4.066 17 C -0.079 4.079 18 C -0.147 4.147 19 C 0.091 3.909 20 F -0.143 7.143 21 C -0.147 4.147 22 C -0.096 4.096 23 C -0.143 4.143 24 C 0.045 3.955 25 O -0.368 6.368 26 C 0.048 3.952 27 C -0.163 4.163 28 C -0.123 4.123 29 H 0.276 0.724 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.382 0.618 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.101 0.899 45 H 0.087 0.913 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.776 -17.323 8.990 20.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.072 3.928 10 C -0.206 4.206 11 C -0.180 4.180 12 C -0.002 4.002 13 N -0.395 5.395 14 C 0.034 3.966 15 C -0.062 4.062 16 C -0.067 4.067 17 C -0.097 4.097 18 C -0.166 4.166 19 C 0.072 3.928 20 F -0.121 7.121 21 C -0.166 4.166 22 C -0.114 4.114 23 C -0.182 4.182 24 C -0.032 4.032 25 O -0.287 6.287 26 C -0.028 4.028 27 C -0.185 4.185 28 C -0.143 4.143 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.215 0.785 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.120 0.880 45 H 0.105 0.895 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.203 -17.026 8.921 20.527 hybrid contribution 0.876 0.355 0.158 0.958 sum -6.327 -16.672 9.080 20.010 Atomic orbital electron populations 1.69851 1.07311 1.28536 1.37972 1.25781 0.94669 1.00828 0.92764 0.86423 0.80605 0.81287 0.78967 1.19793 1.20359 1.18744 1.19357 0.97391 0.91232 1.41886 0.91029 1.17487 0.92484 0.91978 0.90846 1.20546 1.02527 0.92719 1.04807 1.19786 0.97813 0.97003 1.03445 1.17295 0.95431 0.85460 1.02030 1.43798 1.32066 1.06043 1.57575 1.20995 0.89098 0.91846 0.94616 1.21171 0.93370 0.96312 0.95338 1.19597 0.97134 0.95774 0.94167 1.20822 0.96126 0.98505 0.94264 1.21122 0.97857 0.96380 1.01264 1.17727 0.88869 0.93976 0.92195 1.91495 1.59121 1.78450 1.83058 1.21103 0.99466 1.02250 0.93785 1.20997 0.95101 0.95143 1.00116 1.23089 0.93485 1.02759 0.98820 1.23405 0.98263 0.99513 0.81995 1.89170 1.20502 1.92718 1.26268 1.23810 0.81860 0.99224 0.97948 1.20069 1.01348 0.91995 1.05086 1.20935 0.98034 0.96366 0.98967 0.91372 0.89117 0.89750 0.78530 0.92592 0.92815 0.84981 0.84756 0.84755 0.84730 0.89661 0.89881 0.92364 0.88920 0.91628 0.88049 0.89526 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.56 10.94 55.54 0.61 -20.95 16 2 C 0.07 1.93 5.15 -17.34 -0.09 1.84 16 3 Si 0.90 19.32 29.59 -169.99 -5.03 14.29 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.47 -12.76 9.04 -37.87 -0.34 -13.10 16 8 H 0.07 1.89 7.90 -52.49 -0.41 1.48 16 9 C 0.07 2.03 5.57 -106.79 -0.59 1.43 16 10 C -0.19 -4.61 9.74 -39.27 -0.38 -4.99 16 11 C -0.16 -3.54 9.82 -39.77 -0.39 -3.93 16 12 C 0.09 2.01 6.67 -83.69 -0.56 1.46 16 13 N -0.76 -12.49 4.97 -58.50 -0.29 -12.78 16 14 C 0.16 2.22 3.56 -4.04 -0.01 2.21 16 15 C -0.06 -0.64 0.56 -153.92 -0.09 -0.72 16 16 C -0.07 -0.68 4.09 -104.62 -0.43 -1.11 16 17 C -0.08 -0.80 8.61 -39.59 -0.34 -1.14 16 18 C -0.15 -1.52 10.03 -39.51 -0.40 -1.92 16 19 C 0.09 1.01 7.30 -39.42 -0.29 0.73 16 20 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 21 C -0.15 -1.47 10.03 -39.51 -0.40 -1.87 16 22 C -0.10 -0.93 8.52 -39.59 -0.34 -1.26 16 23 C -0.14 -1.23 6.01 -25.16 -0.15 -1.38 16 24 C 0.05 0.40 7.63 37.94 0.29 0.69 16 25 O -0.37 -4.44 11.65 -35.23 -0.41 -4.85 16 26 C 0.05 0.51 5.70 38.11 0.22 0.73 16 27 C -0.16 -3.77 9.21 -39.77 -0.37 -4.13 16 28 C -0.12 -3.22 8.63 -39.26 -0.34 -3.55 16 29 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 30 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 31 H 0.08 1.67 8.06 -52.49 -0.42 1.24 16 32 H 0.38 5.67 7.18 -40.82 -0.29 5.38 16 33 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.05 0.77 7.60 -51.93 -0.39 0.38 16 35 H 0.13 1.17 7.88 -52.48 -0.41 0.75 16 36 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.14 1.08 5.93 -52.49 -0.31 0.77 16 39 H 0.08 0.72 7.73 -51.93 -0.40 0.32 16 40 H 0.08 0.60 7.15 -51.93 -0.37 0.23 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.58 5.93 -51.93 -0.31 0.28 16 44 H 0.10 1.19 7.09 -51.93 -0.37 0.82 16 45 H 0.09 1.82 6.67 -52.48 -0.35 1.47 16 46 H 0.12 3.20 6.18 -52.48 -0.32 2.88 16 LS Contribution 373.76 15.07 5.63 5.63 Total: -1.00 -29.60 373.76 -10.49 -40.09 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -6.04 Total: 10.25 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: -4.99 Total: -30.04 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.32 Total: -33.73 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.41 Total: -4.85 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.60 -10.49 -40.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020818692.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.233 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds