Wall clock time and date at job start Tue Mar 31 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47573 * 2 1 4 4 C 1.53008 * 109.46883 * 119.99917 * 2 1 3 5 5 O 1.45195 * 109.47065 * 64.99767 * 4 2 1 6 6 C 1.34717 * 116.99524 * 180.02562 * 5 4 2 7 7 O 1.21462 * 120.00170 * 359.97438 * 6 5 4 8 8 C 1.47729 * 119.99714 * 180.02562 * 6 5 4 9 9 C 1.39622 * 120.15060 * 180.02562 * 8 6 5 10 10 C 1.37945 * 119.84969 * 180.02562 * 9 8 6 11 11 C 1.38365 * 120.15161 * 0.02562 * 10 9 8 12 12 S 1.76197 * 119.85065 * 179.97438 * 11 10 9 13 13 O 1.42100 * 106.39925 * 336.45651 * 12 11 10 14 14 O 1.42103 * 106.39966 * 203.53767 * 12 11 10 15 15 N 1.65597 * 107.21750 * 89.99747 * 12 11 10 16 16 C 1.46506 * 120.00079 * 65.00357 * 15 12 11 17 17 C 1.50699 * 109.47214 * 164.72113 * 16 15 12 18 18 H 1.07997 * 119.99775 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99959 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99982 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99946 * 0.02562 * 19 17 16 22 22 H 1.48508 * 109.46923 * 89.99901 * 21 19 17 23 23 H 1.48494 * 109.47285 * 209.99436 * 21 19 17 24 24 H 1.48494 * 109.47464 * 329.99875 * 21 19 17 25 25 C 1.38370 * 120.29814 * 0.23362 * 11 10 9 26 26 C 1.37943 * 120.15314 * 359.48790 * 25 11 10 27 27 H 1.08997 * 109.47232 * 300.00434 * 1 2 3 28 28 H 1.09003 * 109.46795 * 59.99967 * 1 2 3 29 29 H 1.08999 * 109.47340 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47232 * 239.99566 * 2 1 3 31 31 H 1.08997 * 109.47414 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46594 * 299.99661 * 3 2 1 33 33 H 1.08997 * 109.47196 * 59.99544 * 3 2 1 34 34 H 1.09002 * 109.46746 * 304.99600 * 4 2 1 35 35 H 1.08998 * 109.46841 * 185.00155 * 4 2 1 36 36 H 1.08004 * 120.07280 * 359.97438 * 9 8 6 37 37 H 1.08001 * 119.92448 * 179.97438 * 10 9 8 38 38 H 0.97005 * 120.00050 * 244.72378 * 15 12 11 39 39 H 1.08999 * 109.46682 * 284.72550 * 16 15 12 40 40 H 1.09000 * 109.47243 * 44.71866 * 16 15 12 41 41 H 0.96999 * 119.99434 * 180.02562 * 20 19 17 42 42 H 1.07998 * 119.92018 * 179.72619 * 25 11 10 43 43 H 1.07998 * 120.07644 * 180.25923 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 8 1.6557 -2.1203 1.1912 6 6 2.0301 -2.9006 2.2236 7 8 2.6606 -2.4255 3.1466 8 6 1.6748 -4.3345 2.2323 9 6 2.0607 -5.1461 3.3009 10 6 1.7260 -6.4844 3.3025 11 6 1.0101 -7.0229 2.2480 12 16 0.5874 -8.7335 2.2579 13 8 1.5306 -9.3749 3.1054 14 8 0.3833 -9.1041 0.9013 15 7 -0.8832 -8.8707 3.0065 16 6 -2.0746 -8.2757 2.3957 17 6 -3.3096 -8.8432 3.0466 18 1 -3.2164 -9.5743 3.8360 19 6 -4.5583 -8.4291 2.6343 20 7 -5.6361 -8.9248 3.2020 21 14 -4.7194 -7.1651 1.2684 22 1 -4.7900 -7.8593 -0.0426 23 1 -5.9559 -6.3689 1.4740 24 1 -3.5405 -6.2624 1.2877 25 6 0.6291 -6.2255 1.1834 26 6 0.9521 -4.8845 1.1717 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9562 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6053 -0.2616 2.1370 35 1 3.1262 -0.6443 1.2953 36 1 2.6207 -4.7272 4.1240 37 1 2.0243 -7.1133 4.1282 38 1 -0.9567 -9.3485 3.8475 39 1 -2.0536 -7.1950 2.5363 40 1 -2.0885 -8.5032 1.3298 41 1 -6.5147 -8.6337 2.9117 42 1 0.0742 -6.6532 0.3615 43 1 0.6505 -4.2623 0.3421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021839087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:50 Heat of formation + Delta-G solvation = -145.845677 kcal Electronic energy + Delta-G solvation = -27017.614032 eV Core-core repulsion = 22961.695450 eV Total energy + Delta-G solvation = -4055.918582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93074 -39.08050 -37.31396 -36.96316 -35.57422 -35.44465 -34.86267 -32.27989 -31.95798 -31.33198 -27.60314 -27.46748 -27.41403 -24.75391 -23.06013 -22.10686 -21.38949 -20.78558 -19.37762 -18.44858 -17.92262 -17.55834 -17.09395 -16.80317 -16.19522 -15.89679 -15.40758 -15.08398 -14.98317 -14.59188 -14.42569 -13.95599 -13.80644 -13.59998 -13.47356 -13.33771 -13.02534 -12.85715 -12.77456 -12.55955 -12.54605 -12.11726 -11.83797 -11.75761 -11.66099 -11.59326 -11.47337 -11.21092 -11.07273 -10.96114 -10.88170 -10.76768 -10.62241 -10.05742 -9.68529 -9.59519 -9.29601 -8.98358 -8.59955 -6.24697 -4.26708 0.02395 0.72245 1.07025 2.07764 2.21124 3.18836 3.22727 3.25229 3.27964 3.52048 4.01149 4.13828 4.25770 4.33273 4.35421 4.36614 4.61698 4.64105 4.73751 4.96382 5.01470 5.05016 5.08277 5.08714 5.21466 5.24655 5.33183 5.40633 5.47072 5.60824 5.68122 5.70277 5.81130 5.85953 5.89590 5.93855 6.06411 6.06742 6.48533 6.74391 6.82464 7.31026 7.37097 7.72261 8.30443 8.76817 9.32721 10.87651 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010258 B = 0.003253 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.839640 B = 8605.066787 C =10567.629847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.146 4.146 4 C 0.071 3.929 5 O -0.348 6.348 6 C 0.510 3.490 7 O -0.501 6.501 8 C -0.081 4.081 9 C -0.078 4.078 10 C -0.029 4.029 11 C -0.639 4.639 12 S 2.688 3.312 13 O -0.968 6.968 14 O -0.956 6.956 15 N -1.092 6.092 16 C 0.216 3.784 17 C -0.532 4.532 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.891 5.891 21 Si 0.871 3.129 22 H -0.270 1.270 23 H -0.282 1.282 24 H -0.263 1.263 25 C -0.031 4.031 26 C -0.084 4.084 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.418 0.582 39 H 0.020 0.980 40 H 0.033 0.967 41 H 0.268 0.732 42 H 0.151 0.849 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.212 16.948 -5.421 23.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.003 4.003 5 O -0.265 6.265 6 C 0.354 3.646 7 O -0.389 6.389 8 C -0.082 4.082 9 C -0.097 4.097 10 C -0.048 4.048 11 C -0.724 4.724 12 S 2.775 3.225 13 O -0.959 6.959 14 O -0.946 6.946 15 N -0.855 5.855 16 C 0.091 3.909 17 C -0.571 4.571 18 H 0.101 0.899 19 C -0.129 4.129 20 N -0.528 5.528 21 Si 0.697 3.303 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.187 1.187 25 C -0.050 4.050 26 C -0.103 4.103 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.164 0.836 37 H 0.169 0.831 38 H 0.254 0.746 39 H 0.038 0.962 40 H 0.051 0.949 41 H 0.078 0.922 42 H 0.169 0.831 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 15.710 16.608 -5.687 23.558 hybrid contribution -0.380 1.428 -0.058 1.479 sum 15.330 18.037 -5.745 24.359 Atomic orbital electron populations 1.21858 0.94044 1.02846 1.02007 1.21179 0.97237 0.95898 0.97154 1.21783 1.01260 0.94614 1.02703 1.23252 1.00344 0.77006 0.99679 1.86531 1.72414 1.22803 1.44704 1.21167 0.76299 0.87270 0.79824 1.90839 1.37124 1.75190 1.35780 1.19380 1.01674 0.89760 0.97424 1.21357 0.98013 0.93165 0.97195 1.20917 0.92763 0.94851 0.96293 1.31643 1.10250 1.28366 1.02096 1.02070 0.72955 0.73433 0.74074 1.93559 1.61291 1.73066 1.67934 1.93582 1.85587 1.80400 1.35026 1.55226 1.22558 1.69546 1.38192 1.19502 0.83943 0.93281 0.94169 1.21018 0.88238 1.26212 1.21664 0.89862 1.24857 0.95549 0.96098 0.96362 1.69872 0.98029 1.43056 1.41831 0.86919 0.78363 0.82051 0.82934 1.19491 1.20780 1.18705 1.21046 0.94528 0.93119 0.96314 1.21579 0.95621 0.95448 0.97639 0.92579 0.92228 0.91657 0.89832 0.92280 0.91498 0.92204 0.90887 0.90991 0.83631 0.83058 0.74638 0.96218 0.94926 0.92214 0.83088 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.09 37.16 0.34 -0.72 16 2 C -0.10 -0.64 3.16 -90.62 -0.29 -0.93 16 3 C -0.15 -0.75 9.19 37.16 0.34 -0.40 16 4 C 0.07 0.61 4.85 37.16 0.18 0.79 16 5 O -0.35 -3.75 9.02 -40.54 -0.37 -4.12 16 6 C 0.51 6.38 7.90 34.61 0.27 6.66 16 7 O -0.50 -7.14 16.14 -19.24 -0.31 -7.45 16 8 C -0.08 -1.02 5.87 -104.98 -0.62 -1.64 16 9 C -0.08 -0.96 9.60 -39.17 -0.38 -1.34 16 10 C -0.03 -0.38 9.50 -39.64 -0.38 -0.75 16 11 C -0.64 -9.25 5.95 -39.49 -0.24 -9.49 16 12 S 2.69 44.50 5.74 -107.50 -0.62 43.89 16 13 O -0.97 -16.91 17.27 -57.17 -0.99 -17.90 16 14 O -0.96 -18.15 16.73 -57.17 -0.96 -19.11 16 15 N -1.09 -20.01 5.99 -11.65 -0.07 -20.08 16 16 C 0.22 4.71 5.05 -5.19 -0.03 4.68 16 17 C -0.53 -13.99 9.83 -34.44 -0.34 -14.32 16 18 H 0.08 2.32 7.90 -52.49 -0.41 1.91 16 19 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 20 N -0.89 -25.81 13.96 55.43 0.77 -25.04 16 21 Si 0.87 19.90 27.47 -169.99 -4.67 15.23 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 25 C -0.03 -0.42 9.50 -39.64 -0.38 -0.80 16 26 C -0.08 -1.02 9.62 -39.17 -0.38 -1.40 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.54 7.82 -51.93 -0.41 0.13 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.15 1.56 7.65 -52.48 -0.40 1.16 16 37 H 0.15 1.67 7.60 -52.49 -0.40 1.27 16 38 H 0.42 7.14 8.54 -34.47 -0.29 6.84 16 39 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 40 H 0.03 0.72 7.17 -51.93 -0.37 0.35 16 41 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.15 1.93 7.60 -52.49 -0.40 1.53 16 43 H 0.15 1.44 7.61 -52.49 -0.40 1.04 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -32.81 380.16 -9.45 -42.27 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.01 Total: 4.30 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -1.97 Total: -17.71 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.70 Total: -45.12 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -2.62 Total: -48.58 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.67 Total: 15.23 kcal Atomic # 16 Polarization: 44.50 SS G_CDS: -0.62 Total: 43.89 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.81 -9.45 -42.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021839087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.579 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds