Wall clock time and date at job start Tue Mar 31 2020 05:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.37881 * 120.00400 * 288.70238 * 3 2 1 5 5 C 1.46312 * 119.99629 * 353.70994 * 4 3 2 6 6 C 1.40198 * 120.25143 * 327.73888 * 5 4 3 7 7 C 1.37640 * 119.86876 * 180.02562 * 6 5 4 8 8 C 1.38710 * 120.38819 * 0.02562 * 7 6 5 9 9 C 1.38041 * 120.51891 * 359.71434 * 8 7 6 10 10 C 1.38784 * 120.11059 * 0.55981 * 9 8 7 11 11 O 1.35440 * 120.19652 * 179.71660 * 10 9 8 12 12 C 1.34756 * 116.99599 * 5.64480 * 11 10 9 13 13 H 1.07999 * 120.00104 * 354.90545 * 12 11 10 14 14 C 1.38771 * 119.99629 * 174.62710 * 12 11 10 15 15 N 1.31472 * 119.99416 * 180.27544 * 14 12 11 16 16 Si 1.86799 * 120.00093 * 0.27868 * 14 12 11 17 17 H 1.48497 * 109.47016 * 89.99767 * 16 14 12 18 18 H 1.48502 * 109.46681 * 209.99614 * 16 14 12 19 19 H 1.48495 * 109.47346 * 329.99769 * 16 14 12 20 20 C 1.47113 * 119.99922 * 108.70787 * 3 2 1 21 21 O 1.21644 * 120.00132 * 179.97438 * 20 3 2 22 22 N 1.34782 * 119.99832 * 359.97438 * 20 3 2 23 23 C 1.46500 * 120.00026 * 180.02562 * 22 20 3 24 24 C 1.53008 * 109.47012 * 275.00429 * 23 22 20 25 25 C 1.52997 * 109.46978 * 180.02562 * 24 23 22 26 26 C 1.52998 * 109.47492 * 59.99513 * 25 24 23 27 27 C 1.53008 * 109.47406 * 300.00225 * 26 25 24 28 28 C 1.52994 * 109.46973 * 155.00063 * 23 22 20 29 29 H 1.07995 * 120.00281 * 173.70909 * 4 3 2 30 30 H 1.07997 * 120.06885 * 0.04656 * 6 5 4 31 31 H 1.08001 * 119.80183 * 179.97438 * 7 6 5 32 32 H 1.08004 * 119.74181 * 179.97438 * 8 7 6 33 33 H 1.07996 * 119.94807 * 180.30351 * 9 8 7 34 34 H 0.97000 * 119.99677 * 180.02562 * 15 14 12 35 35 H 0.97001 * 119.99724 * 0.02562 * 22 20 3 36 36 H 1.08999 * 109.46955 * 35.00220 * 23 22 20 37 37 H 1.09006 * 109.46260 * 299.99720 * 24 23 22 38 38 H 1.08993 * 109.47243 * 59.99269 * 24 23 22 39 39 H 1.08999 * 109.46824 * 299.99690 * 25 24 23 40 40 H 1.08999 * 109.47221 * 179.97438 * 25 24 23 41 41 H 1.08997 * 109.47521 * 179.97438 * 26 25 24 42 42 H 1.08998 * 109.47009 * 59.99464 * 26 25 24 43 43 H 1.09002 * 109.46486 * 300.00365 * 27 26 25 44 44 H 1.08998 * 109.47298 * 179.97438 * 27 26 25 45 45 H 1.08999 * 109.47503 * 300.00249 * 28 23 22 46 46 H 1.08999 * 109.47152 * 60.00277 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2576 -0.3819 1.1310 5 6 2.5328 -0.6558 2.3721 6 6 1.3596 0.0494 2.6752 7 6 0.6843 -0.2143 3.8452 8 6 1.1578 -1.1740 4.7277 9 6 2.3083 -1.8816 4.4428 10 6 3.0091 -1.6288 3.2718 11 8 4.1413 -2.3180 2.9932 12 6 4.4720 -3.3170 3.8349 13 1 3.8909 -3.4839 4.7298 14 6 5.5558 -4.1351 3.5488 15 7 5.8751 -5.1132 4.3672 16 14 6.5609 -3.8466 2.0009 17 1 7.6684 -2.9032 2.2986 18 1 7.1235 -5.1371 1.5284 19 1 5.6899 -3.2701 0.9454 20 6 3.3033 0.4096 -1.2067 21 8 4.5198 0.4106 -1.2066 22 7 2.6292 0.7832 -2.3124 23 6 3.3615 1.1899 -3.5144 24 6 3.7248 2.6728 -3.4128 25 6 4.4889 3.0977 -4.6683 26 6 3.6114 2.8708 -5.9009 27 6 3.2481 1.3879 -6.0024 28 6 2.4843 0.9629 -4.7472 29 1 4.3328 -0.4794 1.1008 30 1 0.9863 0.7978 1.9919 31 1 -0.2191 0.3299 4.0779 32 1 0.6199 -1.3721 5.6430 33 1 2.6660 -2.6302 5.1341 34 1 6.6329 -5.6848 4.1675 35 1 1.6592 0.7827 -2.3124 36 1 4.2724 0.5979 -3.6025 37 1 2.8137 3.2647 -3.3246 38 1 4.3495 2.8345 -2.5345 39 1 5.3999 2.5057 -4.7570 40 1 4.7474 4.1542 -4.5963 41 1 4.1556 3.1739 -6.7953 42 1 2.7004 3.4627 -5.8122 43 1 4.1591 0.7960 -6.0909 44 1 2.6225 1.2264 -6.8802 45 1 2.2255 -0.0935 -4.8194 46 1 1.5734 1.5549 -4.6590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022344815.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:33 Heat of formation + Delta-G solvation = -10.528943 kcal Electronic energy + Delta-G solvation = -28467.577309 eV Core-core repulsion = 24515.634307 eV Total energy + Delta-G solvation = -3951.943003 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.16911 -39.57994 -38.22595 -37.21066 -36.24073 -34.24399 -33.52658 -32.69492 -31.03398 -30.30241 -29.54886 -28.87071 -25.59703 -24.62878 -22.95690 -22.68346 -21.61144 -21.07428 -20.76713 -20.21313 -18.44247 -18.21233 -17.22258 -16.57115 -15.60648 -15.44176 -15.13710 -14.99682 -14.56177 -14.51776 -14.36914 -14.31825 -14.14374 -14.06270 -13.72710 -13.26911 -13.15197 -12.88879 -12.69540 -12.64888 -12.59990 -12.45363 -12.34312 -12.05574 -11.71068 -11.50912 -11.41925 -11.07923 -10.99241 -10.95770 -10.91409 -10.71770 -10.48183 -10.36751 -9.90287 -9.76187 -9.59318 -9.12359 -9.08362 -8.22415 -7.55037 -6.70512 -4.34805 0.58525 2.01337 2.12137 2.83936 2.85603 3.12311 3.15500 3.16309 3.30617 3.79076 4.04268 4.21452 4.23791 4.40853 4.41110 4.48506 4.63154 4.83469 4.85486 4.89785 4.98607 5.17662 5.21359 5.22795 5.28003 5.36196 5.40396 5.48556 5.50099 5.69868 5.74935 5.78685 5.82047 5.83575 5.84810 5.96027 6.04688 6.12091 6.16987 6.19778 6.25475 6.42579 6.47322 6.82768 6.87088 6.99798 7.28525 7.47844 7.49587 7.70413 7.71705 8.28709 8.61222 9.17424 10.34513 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011361 B = 0.003092 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.971279 B = 9052.398645 C =10966.113495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.269 3.731 3 C -0.205 4.205 4 C 0.130 3.870 5 C -0.201 4.201 6 C -0.037 4.037 7 C -0.210 4.210 8 C -0.046 4.046 9 C -0.222 4.222 10 C 0.191 3.809 11 O -0.189 6.189 12 C -0.393 4.393 13 H 0.113 0.887 14 C 0.071 3.929 15 N -0.859 5.859 16 Si 0.900 3.100 17 H -0.267 1.267 18 H -0.278 1.278 19 H -0.252 1.252 20 C 0.584 3.416 21 O -0.536 6.536 22 N -0.730 5.730 23 C 0.147 3.853 24 C -0.130 4.130 25 C -0.117 4.117 26 C -0.122 4.122 27 C -0.115 4.115 28 C -0.128 4.128 29 H 0.155 0.845 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.141 0.859 34 H 0.286 0.714 35 H 0.397 0.603 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.090 12.949 -14.309 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.044 4.044 3 C -0.212 4.212 4 C 0.107 3.893 5 C -0.203 4.203 6 C -0.055 4.055 7 C -0.229 4.229 8 C -0.064 4.064 9 C -0.240 4.240 10 C 0.135 3.865 11 O -0.090 6.090 12 C -0.467 4.467 13 H 0.130 0.870 14 C -0.136 4.136 15 N -0.493 5.493 16 Si 0.724 3.276 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.175 1.175 20 C 0.372 3.628 21 O -0.415 6.415 22 N -0.380 5.380 23 C 0.043 3.957 24 C -0.169 4.169 25 C -0.155 4.155 26 C -0.159 4.159 27 C -0.153 4.153 28 C -0.166 4.166 29 H 0.173 0.827 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.159 0.841 34 H 0.096 0.904 35 H 0.231 0.769 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.592 12.728 -14.472 20.068 hybrid contribution 0.331 -0.137 -0.266 0.446 sum -5.261 12.591 -14.738 20.086 Atomic orbital electron populations 1.81229 1.11723 1.10652 1.08258 1.25455 0.92543 0.93218 0.93152 1.17835 0.84656 1.21758 0.96968 1.23032 1.00347 0.77731 0.88231 1.17990 1.00146 1.05673 0.96464 1.21112 0.91375 0.96897 0.96147 1.20614 1.02306 1.03234 0.96716 1.21075 0.94386 0.93165 0.97807 1.21283 0.98423 1.05168 0.99176 1.19196 0.85041 0.90621 0.91650 1.83437 1.33774 1.41715 1.50104 1.20904 1.15254 1.06453 1.04100 0.86975 1.24554 0.96437 0.93740 0.98850 1.69590 1.27366 1.15969 1.36355 0.86242 0.80608 0.78422 0.82332 1.19198 1.20333 1.17525 1.17541 0.86863 0.76273 0.82075 1.90818 1.12761 1.54600 1.83292 1.45932 1.10057 1.69209 1.12838 1.20968 0.95970 0.95550 0.83260 1.21942 1.00692 0.95640 0.98637 1.21494 0.98673 1.01277 0.94050 1.21578 0.99931 0.96340 0.98061 1.21469 1.00440 0.96456 0.96955 1.21812 0.98724 1.01999 0.94065 0.82733 0.86357 0.86791 0.86513 0.84149 0.90375 0.76875 0.89115 0.91924 0.91051 0.91617 0.91787 0.91938 0.91996 0.91547 0.91609 0.91201 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.21 18.04 41.84 0.75 -6.46 16 2 C 0.27 4.19 10.53 -22.47 -0.24 3.95 16 3 C -0.20 -3.21 5.84 -104.50 -0.61 -3.82 16 4 C 0.13 2.26 9.04 -36.47 -0.33 1.93 16 5 C -0.20 -3.72 5.56 -104.94 -0.58 -4.31 16 6 C -0.04 -0.62 8.29 -39.06 -0.32 -0.94 16 7 C -0.21 -3.35 10.02 -39.63 -0.40 -3.75 16 8 C -0.05 -0.75 10.03 -39.48 -0.40 -1.15 16 9 C -0.22 -4.30 9.16 -39.45 -0.36 -4.66 16 10 C 0.19 4.00 6.67 -38.40 -0.26 3.75 16 11 O -0.19 -4.47 8.00 1.21 0.01 -4.46 16 12 C -0.39 -10.05 9.95 30.93 0.31 -9.74 16 13 H 0.11 2.91 5.44 -52.49 -0.29 2.62 16 14 C 0.07 1.84 5.50 -17.51 -0.10 1.75 16 15 N -0.86 -22.97 13.96 55.49 0.77 -22.19 16 16 Si 0.90 20.23 28.62 -169.99 -4.86 15.37 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.25 -5.71 7.11 56.52 0.40 -5.31 16 20 C 0.58 8.91 7.71 -12.66 -0.10 8.81 16 21 O -0.54 -9.68 15.96 5.24 0.08 -9.59 16 22 N -0.73 -8.80 5.03 -54.98 -0.28 -9.08 16 23 C 0.15 1.54 2.45 -67.93 -0.17 1.37 16 24 C -0.13 -1.27 5.50 -26.73 -0.15 -1.41 16 25 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 26 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 27 C -0.12 -0.80 5.92 -26.75 -0.16 -0.96 16 28 C -0.13 -1.04 5.39 -26.76 -0.14 -1.18 16 29 H 0.16 2.74 7.55 -52.49 -0.40 2.34 16 30 H 0.12 1.86 5.65 -52.49 -0.30 1.57 16 31 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 33 H 0.14 2.80 5.64 -52.49 -0.30 2.51 16 34 H 0.29 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.40 4.30 7.48 -40.82 -0.31 3.99 16 36 H 0.09 1.11 7.58 -51.93 -0.39 0.71 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 385.52 15.07 5.81 5.81 Total: -1.00 -27.68 385.52 -8.20 -35.88 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.18 Total: 7.17 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -4.31 Total: -12.45 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 1.25 Total: -37.73 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.09 Total: -14.05 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.86 Total: 15.37 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -27.68 -8.20 -35.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022344815.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.351 kcal (2) G-P(sol) polarization free energy of solvation -27.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds