Wall clock time and date at job start Tue Mar 31 2020 06:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38278 * 119.93297 * 2 1 4 4 C 1.38115 * 120.07043 * 179.97438 * 3 2 1 5 5 C 1.38864 * 119.92924 * 0.02902 * 4 3 2 6 6 N 1.39934 * 120.06685 * 179.97438 * 5 4 3 7 7 C 1.34525 * 126.69225 * 359.96787 * 6 5 4 8 8 O 1.21532 * 123.77138 * 0.04214 * 7 6 5 9 9 N 1.33799 * 112.45766 * 180.02562 * 7 6 5 10 10 C 1.46499 * 124.17868 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46931 * 90.02479 * 10 9 7 12 12 H 1.08994 * 109.46718 * 54.99896 * 11 10 9 13 13 C 1.47199 * 109.47382 * 295.00156 * 11 10 9 14 14 N 7.11128 * 143.97519 * 38.56638 * 2 1 3 15 15 C 1.52998 * 109.46798 * 175.00011 * 11 10 9 16 16 C 1.50699 * 109.46700 * 185.00031 * 15 11 10 17 17 H 1.07999 * 120.00803 * 0.02562 * 16 15 11 18 18 C 1.37881 * 119.99889 * 180.02562 * 16 15 11 19 19 N 1.31520 * 120.00186 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00030 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99863 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00044 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00037 * 20 18 16 24 24 C 1.34764 * 111.64394 * 0.23385 * 9 7 6 25 25 O 1.21237 * 127.15940 * 179.73430 * 24 9 7 26 26 C 1.47319 * 126.68525 * 180.02562 * 6 5 4 27 27 H 1.08992 * 110.60400 * 61.28081 * 26 6 5 28 28 C 1.53000 * 110.59766 * 298.48523 * 26 6 5 29 29 C 1.38873 * 119.86186 * 0.24503 * 5 4 3 30 30 C 1.38118 * 119.92734 * 359.45505 * 29 5 4 31 31 H 1.08996 * 109.47288 * 90.00078 * 1 2 3 32 32 H 1.08996 * 109.47186 * 209.99826 * 1 2 3 33 33 H 1.09002 * 109.47032 * 329.99893 * 1 2 3 34 34 H 1.07996 * 119.95983 * 0.02562 * 3 2 1 35 35 H 1.07999 * 120.03026 * 179.97438 * 4 3 2 36 36 H 1.09000 * 109.46803 * 330.02878 * 10 9 7 37 37 H 1.08994 * 109.47387 * 210.02695 * 10 9 7 38 38 H 1.09004 * 109.47139 * 65.00408 * 15 11 10 39 39 H 1.08997 * 109.47675 * 305.00008 * 15 11 10 40 40 H 0.96998 * 120.00124 * 180.02562 * 19 18 16 41 41 H 1.08994 * 109.47135 * 60.00636 * 28 26 6 42 42 H 1.08995 * 109.47081 * 180.02562 * 28 26 6 43 43 H 1.09006 * 109.47092 * 300.00475 * 28 26 6 44 44 H 1.07998 * 120.03419 * 179.73034 * 29 5 4 45 45 H 1.07993 * 119.96331 * 180.32023 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5782 1.2016 0.0005 5 6 4.2739 -0.0001 0.0005 6 7 5.6732 -0.0001 0.0005 7 6 6.4770 1.0785 -0.0001 8 8 6.0706 2.2239 0.0001 9 7 7.7739 0.7495 -0.0005 10 6 8.8697 1.7219 -0.0016 11 6 9.2522 2.0609 1.4405 12 1 9.4862 1.1430 1.9796 13 6 8.1266 2.7434 2.0993 14 7 7.2584 3.2702 2.6074 15 6 10.4761 2.9790 1.4411 16 6 10.9272 3.2137 2.8596 17 1 10.3946 2.7538 3.6789 18 6 12.0201 4.0157 3.1118 19 7 12.4141 4.2202 4.3498 20 14 12.9410 4.8119 1.6950 21 1 12.3458 6.1405 1.4020 22 1 12.8401 3.9480 0.4912 23 1 14.3693 4.9801 2.0651 24 6 7.9477 -0.5868 -0.0053 25 8 9.0003 -1.1884 -0.0114 26 6 6.5533 -1.1815 -0.0001 27 1 6.3893 -1.7815 -0.8951 28 6 6.3271 -2.0219 1.2582 29 6 3.5780 -1.2019 -0.0053 30 6 2.1969 -1.1985 0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6553 2.1326 0.0004 35 1 4.1164 2.1380 0.0001 36 1 8.5502 2.6286 -0.5155 37 1 9.7317 1.2973 -0.5160 38 1 10.2158 3.9319 0.9802 39 1 11.2821 2.5104 0.8763 40 1 13.1827 4.7847 4.5271 41 1 5.2897 -2.3545 1.2914 42 1 6.9867 -2.8894 1.2392 43 1 6.5442 -1.4202 2.1409 44 1 4.1163 -2.1382 -0.0098 45 1 1.6552 -2.1328 0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024087642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:09 Heat of formation + Delta-G solvation = 14.979666 kcal Electronic energy + Delta-G solvation = -29493.988947 eV Core-core repulsion = 25477.726169 eV Total energy + Delta-G solvation = -4016.262777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.89497 -39.76379 -38.70396 -37.33101 -36.54739 -35.35172 -33.84828 -32.79096 -31.91013 -31.37462 -30.63030 -28.42896 -26.64389 -25.19003 -24.25851 -23.27643 -22.57534 -21.61749 -21.35093 -20.28355 -18.34043 -17.54823 -17.09432 -16.92298 -16.57245 -16.28560 -15.84815 -15.71074 -14.99673 -14.73096 -14.60107 -14.30510 -14.15988 -14.02732 -13.90910 -13.73236 -13.49501 -13.27088 -12.84495 -12.65263 -12.57347 -12.49665 -12.41799 -12.23518 -12.00164 -11.85963 -11.61807 -11.46359 -11.37232 -11.01871 -10.79734 -10.52211 -10.43354 -10.31144 -10.17796 -9.99967 -9.60935 -9.37720 -9.19441 -8.64350 -8.12174 -6.13311 -4.14869 0.95696 1.15753 1.49353 1.73360 2.57232 2.80162 3.26054 3.32823 3.33953 3.54489 3.58664 3.62184 3.63365 4.18446 4.35897 4.42645 4.53541 4.55432 4.63181 4.66651 4.83995 5.05984 5.09366 5.11659 5.13496 5.18424 5.21029 5.30913 5.31620 5.34419 5.37941 5.54460 5.62057 5.65380 5.68928 5.84317 6.04394 6.09158 6.12562 6.25454 6.28448 6.40437 6.79098 6.84087 6.92909 7.01647 7.14306 7.57110 7.83789 8.34943 8.41086 8.88941 9.45457 10.99636 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018431 B = 0.002846 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.779533 B = 9836.178256 C =10608.431971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.115 4.115 3 C -0.087 4.087 4 C -0.146 4.146 5 C 0.189 3.811 6 N -0.564 5.564 7 C 0.698 3.302 8 O -0.507 6.507 9 N -0.574 5.574 10 C 0.120 3.880 11 C 0.004 3.996 12 H 0.110 0.890 13 C 0.226 3.774 14 N -0.441 5.441 15 C -0.002 4.002 16 C -0.529 4.529 17 H 0.074 0.926 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.878 3.122 21 H -0.276 1.276 22 H -0.262 1.262 23 H -0.286 1.286 24 C 0.528 3.472 25 O -0.452 6.452 26 C 0.087 3.913 27 H 0.132 0.868 28 C -0.158 4.158 29 C -0.157 4.157 30 C -0.092 4.092 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.127 0.873 35 H 0.155 0.845 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.025 0.975 39 H 0.042 0.958 40 H 0.265 0.735 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.130 0.870 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.014 -15.487 -13.786 28.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.116 4.116 3 C -0.106 4.106 4 C -0.166 4.166 5 C 0.096 3.904 6 N -0.292 5.292 7 C 0.401 3.599 8 O -0.378 6.378 9 N -0.319 5.319 10 C -0.001 4.001 11 C -0.019 4.019 12 H 0.128 0.872 13 C -0.092 4.092 14 N -0.117 5.117 15 C -0.041 4.041 16 C -0.566 4.566 17 H 0.092 0.908 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.186 1.186 23 H -0.212 1.212 24 C 0.314 3.686 25 O -0.320 6.320 26 C -0.020 4.020 27 H 0.150 0.850 28 C -0.216 4.216 29 C -0.178 4.178 30 C -0.110 4.110 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.172 0.828 36 H 0.123 0.877 37 H 0.136 0.864 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.147 0.853 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.778 -14.227 -12.905 27.570 hybrid contribution 1.078 0.339 -0.671 1.314 sum -18.700 -13.889 -13.576 26.961 Atomic orbital electron populations 1.20740 0.91132 1.02709 1.02143 1.19918 0.96230 0.93135 1.02296 1.20945 0.93222 0.97801 0.98642 1.21552 0.94562 0.98289 1.02220 1.17375 0.78187 0.94973 0.99890 1.45018 1.04141 1.06643 1.73388 1.15860 0.80944 0.85019 0.78119 1.90955 1.76101 1.18427 1.52360 1.46574 1.07886 1.09450 1.67959 1.22095 0.87744 0.92074 0.98152 1.19332 0.90564 1.00016 0.91945 0.87191 1.28715 0.93172 0.93674 0.93676 1.81003 1.12323 1.09185 1.09150 1.19626 0.90536 0.94051 0.99848 1.20941 1.13886 1.31161 0.90659 0.90812 1.24980 0.96773 0.95706 0.95569 1.69901 1.26303 1.38157 1.18932 0.86815 0.79285 0.80340 0.83108 1.20165 1.18603 1.21166 1.20678 0.90941 0.82162 0.74822 1.90847 1.30221 1.65896 1.45015 1.22288 0.87070 0.88886 1.03743 0.85048 1.22098 1.04339 1.00156 0.94983 1.20771 0.94516 0.95964 1.06550 1.20770 0.92927 0.97713 0.99602 0.91378 0.91681 0.91608 0.85524 0.82756 0.87702 0.86445 0.95653 0.93969 0.92476 0.89773 0.89117 0.90956 0.85265 0.85554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.11 -1.00 5.88 -104.59 -0.62 -1.61 16 3 C -0.09 -0.90 9.69 -39.61 -0.38 -1.29 16 4 C -0.15 -1.84 9.36 -39.39 -0.37 -2.21 16 5 C 0.19 2.16 6.55 -83.69 -0.55 1.61 16 6 N -0.56 -6.66 2.95 -112.25 -0.33 -6.99 16 7 C 0.70 10.24 7.58 -88.02 -0.67 9.58 16 8 O -0.51 -8.95 13.50 5.34 0.07 -8.88 16 9 N -0.57 -7.82 2.49 -120.73 -0.30 -8.12 16 10 C 0.12 1.71 5.14 -4.04 -0.02 1.69 16 11 C 0.00 0.07 2.42 -93.41 -0.23 -0.16 16 12 H 0.11 1.96 8.14 -51.93 -0.42 1.53 16 13 C 0.23 4.80 12.19 -20.78 -0.25 4.54 16 14 N -0.44 -10.30 18.50 42.14 0.78 -9.52 16 15 C 0.00 -0.03 3.49 -27.88 -0.10 -0.13 16 16 C -0.53 -14.28 9.15 -34.44 -0.32 -14.59 16 17 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 19 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 20 Si 0.88 20.56 27.47 -169.99 -4.67 15.89 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.53 6.35 7.66 -10.55 -0.08 6.27 16 25 O -0.45 -6.26 17.75 5.59 0.10 -6.16 16 26 C 0.09 0.79 3.33 -68.20 -0.23 0.56 16 27 H 0.13 0.81 8.14 -51.93 -0.42 0.38 16 28 C -0.16 -1.21 9.29 37.16 0.35 -0.86 16 29 C -0.16 -1.36 8.72 -39.39 -0.34 -1.70 16 30 C -0.09 -0.73 9.69 -39.61 -0.38 -1.11 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.16 2.32 5.41 -52.49 -0.28 2.04 16 36 H 0.10 1.45 7.86 -51.93 -0.41 1.04 16 37 H 0.12 1.40 8.00 -51.93 -0.42 0.98 16 38 H 0.03 0.54 7.57 -51.93 -0.39 0.14 16 39 H 0.04 0.83 7.20 -51.93 -0.37 0.46 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.08 0.51 5.57 -51.93 -0.29 0.23 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.13 0.80 5.75 -52.49 -0.30 0.50 16 45 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 379.50 15.07 5.72 5.72 Total: -1.00 -34.68 379.50 -7.62 -42.31 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.84 Total: -0.18 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -3.92 Total: 2.20 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.92 Total: -50.91 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.17 Total: -15.04 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.67 Total: 15.89 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.68 -7.62 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024087642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.285 kcal (2) G-P(sol) polarization free energy of solvation -34.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds