Wall clock time and date at job start Tue Mar 31 2020 06:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38279 * 119.93526 * 2 1 4 4 C 1.38112 * 120.07219 * 180.25782 * 3 2 1 5 5 C 1.38877 * 119.92864 * 359.48999 * 4 3 2 6 6 N 1.39933 * 120.06838 * 180.27769 * 5 4 3 7 7 C 1.34524 * 126.69120 * 359.68683 * 6 5 4 8 8 O 1.21541 * 123.77121 * 0.03952 * 7 6 5 9 9 N 1.33791 * 112.45588 * 179.86909 * 7 6 5 10 10 C 1.46501 * 124.17767 * 180.21027 * 9 7 6 11 11 C 1.52999 * 109.47069 * 270.22738 * 10 9 7 12 12 H 1.09003 * 109.47397 * 304.99986 * 11 10 9 13 13 C 1.47199 * 109.47246 * 65.00257 * 11 10 9 14 14 N 7.11024 * 143.96840 * 321.15142 * 2 1 3 15 15 C 1.53001 * 109.47068 * 185.00266 * 11 10 9 16 16 C 1.50699 * 109.47312 * 175.00307 * 15 11 10 17 17 H 1.08002 * 120.00045 * 359.97438 * 16 15 11 18 18 C 1.37876 * 120.00180 * 179.97438 * 16 15 11 19 19 N 1.31518 * 119.99767 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00096 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47130 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47258 * 120.00019 * 20 18 16 23 23 H 1.48498 * 109.47218 * 239.99755 * 20 18 16 24 24 C 1.34775 * 111.64437 * 0.41802 * 9 7 6 25 25 O 1.21232 * 127.15602 * 179.72861 * 24 9 7 26 26 C 1.47316 * 126.68593 * 180.02562 * 6 5 4 27 27 H 1.08998 * 110.60040 * 298.49053 * 26 6 5 28 28 C 1.53000 * 110.59997 * 61.43757 * 26 6 5 29 29 C 1.38871 * 119.85853 * 0.25787 * 5 4 3 30 30 C 1.38113 * 119.92847 * 359.97438 * 29 5 4 31 31 H 1.08997 * 109.47458 * 270.25774 * 1 2 3 32 32 H 1.09008 * 109.46699 * 30.24834 * 1 2 3 33 33 H 1.08997 * 109.47704 * 150.25085 * 1 2 3 34 34 H 1.08004 * 119.96567 * 0.02562 * 3 2 1 35 35 H 1.08002 * 120.03919 * 179.77427 * 4 3 2 36 36 H 1.08992 * 109.46997 * 30.22910 * 10 9 7 37 37 H 1.09000 * 109.47077 * 150.23037 * 10 9 7 38 38 H 1.09003 * 109.46764 * 294.99973 * 15 11 10 39 39 H 1.08996 * 109.47312 * 54.99779 * 15 11 10 40 40 H 0.97002 * 119.99582 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.46986 * 59.99523 * 28 26 6 42 42 H 1.08995 * 109.47381 * 179.97438 * 28 26 6 43 43 H 1.08998 * 109.46930 * 300.00035 * 28 26 6 44 44 H 1.08000 * 120.03588 * 180.02562 * 29 5 4 45 45 H 1.07998 * 119.96239 * 179.97438 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5781 1.2016 -0.0054 5 6 4.2739 -0.0003 -0.0001 6 7 5.6732 -0.0003 0.0004 7 6 6.4770 1.0783 -0.0098 8 8 6.0706 2.2237 -0.0204 9 7 7.7738 0.7494 -0.0034 10 6 8.8696 1.7217 -0.0074 11 6 9.2517 2.0537 -1.4512 12 1 9.4856 1.1332 -1.9860 13 6 8.1259 2.7331 -2.1129 14 7 7.2570 3.2573 -2.6235 15 6 10.4757 2.9717 -1.4567 16 6 10.9263 3.1996 -2.8765 17 1 10.3933 2.7358 -3.6934 18 6 12.0191 4.0003 -3.1329 19 7 12.6678 4.5656 -2.1383 20 14 12.5781 4.2823 -4.8928 21 1 11.6872 3.5396 -5.8201 22 1 12.5192 5.7330 -5.2045 23 1 13.9727 3.7979 -5.0528 24 6 7.9476 -0.5871 0.0026 25 8 9.0002 -1.1886 0.0046 26 6 6.5533 -1.1817 0.0051 27 1 6.3918 -1.7766 0.9040 28 6 6.3262 -2.0272 -1.2496 29 6 3.5780 -1.2020 0.0052 30 6 2.1968 -1.1985 0.0057 31 1 -0.3634 0.0046 1.0276 32 1 -0.3633 0.8878 -0.5177 33 1 -0.3634 -0.8922 -0.5099 34 1 1.6554 2.1327 0.0004 35 1 4.1165 2.1379 -0.0091 36 1 8.5504 2.6308 0.5022 37 1 9.7319 1.2995 0.5087 38 1 10.2155 3.9268 -1.0004 39 1 11.2818 2.5059 -0.8900 40 1 13.4364 5.1293 -2.3187 41 1 6.5425 -1.4291 -2.1349 42 1 6.9857 -2.8946 -1.2276 43 1 5.2887 -2.3598 -1.2807 44 1 4.1162 -2.1383 0.0097 45 1 1.6551 -2.1327 0.0094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024087644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:13 Heat of formation + Delta-G solvation = 10.520911 kcal Electronic energy + Delta-G solvation = -29451.576488 eV Core-core repulsion = 25435.120364 eV Total energy + Delta-G solvation = -4016.456123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.84550 -39.73268 -38.65742 -37.24276 -36.48420 -35.29828 -33.80176 -32.79594 -31.82218 -31.30697 -30.60070 -28.07517 -26.46940 -25.12038 -24.19642 -23.24717 -22.55413 -21.89953 -21.34285 -20.25027 -18.30351 -17.48076 -16.96127 -16.85341 -16.28460 -16.19163 -15.79320 -15.63394 -14.94167 -14.66881 -14.58962 -14.53512 -14.14498 -13.98104 -13.83812 -13.73273 -13.43415 -13.03774 -12.81978 -12.61449 -12.58637 -12.47540 -12.21897 -12.13781 -11.83622 -11.78891 -11.52434 -11.42937 -11.12741 -10.92807 -10.77952 -10.55718 -10.48787 -10.39973 -10.12849 -9.99991 -9.54941 -9.23576 -9.17555 -8.49001 -8.09661 -6.12995 -4.16308 0.98240 1.17589 1.53754 1.78628 2.62503 2.85192 3.27252 3.35439 3.40017 3.57519 3.62433 3.66875 3.68058 4.21748 4.38348 4.45390 4.55880 4.64092 4.65683 4.69896 4.86353 5.08323 5.11279 5.16708 5.20119 5.25258 5.29182 5.32881 5.35788 5.39630 5.43180 5.61434 5.66277 5.68707 5.72561 5.86875 6.10877 6.16093 6.28986 6.32162 6.36052 6.42402 6.81825 6.98284 7.19711 7.34158 7.43973 7.81303 7.88928 8.17106 8.44080 8.87295 9.49296 10.97933 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017475 B = 0.002786 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.883151 B =10047.044224 C =10816.489431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.115 4.115 3 C -0.087 4.087 4 C -0.146 4.146 5 C 0.189 3.811 6 N -0.565 5.565 7 C 0.697 3.303 8 O -0.507 6.507 9 N -0.573 5.573 10 C 0.123 3.877 11 C -0.006 4.006 12 H 0.105 0.895 13 C 0.229 3.771 14 N -0.449 5.449 15 C 0.035 3.965 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.282 1.282 24 C 0.527 3.473 25 O -0.452 6.452 26 C 0.086 3.914 27 H 0.132 0.868 28 C -0.158 4.158 29 C -0.158 4.158 30 C -0.092 4.092 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.127 0.873 35 H 0.155 0.845 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.031 0.969 39 H 0.043 0.957 40 H 0.263 0.737 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.130 0.870 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.323 -16.078 8.857 26.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.116 4.116 3 C -0.106 4.106 4 C -0.166 4.166 5 C 0.096 3.904 6 N -0.293 5.293 7 C 0.400 3.600 8 O -0.378 6.378 9 N -0.318 5.318 10 C 0.002 3.998 11 C -0.029 4.029 12 H 0.122 0.878 13 C -0.089 4.089 14 N -0.125 5.125 15 C -0.004 4.004 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.208 1.208 24 C 0.313 3.687 25 O -0.320 6.320 26 C -0.020 4.020 27 H 0.150 0.850 28 C -0.216 4.216 29 C -0.179 4.179 30 C -0.110 4.110 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.145 0.855 35 H 0.173 0.827 36 H 0.123 0.877 37 H 0.136 0.864 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.147 0.853 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.073 -14.797 8.128 26.228 hybrid contribution 0.895 0.073 -0.813 1.212 sum -19.178 -14.724 7.315 25.260 Atomic orbital electron populations 1.20737 0.91152 1.02677 1.02138 1.19912 0.96211 0.93139 1.02378 1.20943 0.93227 0.97788 0.98651 1.21561 0.94555 0.98315 1.02213 1.17383 0.78237 0.94958 0.99788 1.45029 1.04120 1.06676 1.73431 1.15876 0.80991 0.85002 0.78120 1.90958 1.76122 1.18425 1.52310 1.46632 1.07917 1.09488 1.67798 1.22100 0.87520 0.91918 0.98267 1.19593 0.91342 1.00247 0.91687 0.87761 1.28884 0.93056 0.93445 0.93512 1.81005 1.12355 1.09568 1.09598 1.19168 0.88665 0.93682 0.98893 1.21099 1.13161 1.30297 0.91847 0.92482 1.24941 0.96318 0.95371 0.97280 1.69943 1.20173 1.31880 1.30823 0.86510 0.78559 0.78102 0.84771 1.19715 1.20912 1.20769 1.20669 0.90890 0.82223 0.74880 1.90844 1.30212 1.65919 1.45048 1.22288 0.87180 0.88879 1.03679 0.85044 1.22098 1.04303 1.00101 0.95062 1.20771 0.94509 0.95973 1.06605 1.20766 0.92932 0.97697 0.99631 0.91387 0.91625 0.91703 0.85538 0.82738 0.87729 0.86432 0.95110 0.93881 0.92752 0.91033 0.89142 0.89805 0.85270 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.01 36.00 0.36 -0.33 16 2 C -0.12 -1.02 5.88 -104.59 -0.62 -1.63 16 3 C -0.09 -0.92 9.69 -39.61 -0.38 -1.30 16 4 C -0.15 -1.88 9.36 -39.39 -0.37 -2.25 16 5 C 0.19 2.22 6.55 -83.69 -0.55 1.67 16 6 N -0.56 -6.85 2.95 -112.25 -0.33 -7.18 16 7 C 0.70 10.57 7.58 -88.02 -0.67 9.90 16 8 O -0.51 -9.22 13.46 5.33 0.07 -9.14 16 9 N -0.57 -8.15 2.50 -120.73 -0.30 -8.45 16 10 C 0.12 1.86 5.14 -4.04 -0.02 1.84 16 11 C -0.01 -0.12 2.42 -93.41 -0.23 -0.34 16 12 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 13 C 0.23 4.93 12.17 -20.76 -0.25 4.67 16 14 N -0.45 -10.51 18.48 42.16 0.78 -9.73 16 15 C 0.03 0.80 4.42 -27.88 -0.12 0.67 16 16 C -0.53 -14.05 8.60 -34.44 -0.30 -14.34 16 17 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 20 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.53 6.59 7.65 -10.55 -0.08 6.51 16 25 O -0.45 -6.49 17.76 5.60 0.10 -6.39 16 26 C 0.09 0.81 3.35 -68.20 -0.23 0.58 16 27 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 28 C -0.16 -1.23 9.28 37.16 0.34 -0.88 16 29 C -0.16 -1.40 8.72 -39.39 -0.34 -1.74 16 30 C -0.09 -0.74 9.69 -39.61 -0.38 -1.13 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.39 8.09 -51.92 -0.42 -0.03 16 33 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 34 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.16 2.37 5.41 -52.49 -0.28 2.09 16 36 H 0.10 1.58 7.86 -51.93 -0.41 1.18 16 37 H 0.12 1.55 8.00 -51.93 -0.42 1.14 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.52 5.54 -51.93 -0.29 0.24 16 44 H 0.13 0.83 5.73 -52.49 -0.30 0.52 16 45 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 382.99 15.07 5.77 5.77 Total: -1.00 -33.42 382.99 -8.00 -41.42 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.87 Total: -1.61 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -3.93 Total: 3.54 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.88 Total: -50.00 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.17 Total: -15.53 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.42 -8.00 -41.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024087644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.944 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds