Wall clock time and date at job start Tue Mar 31 2020 06:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38277 * 119.93282 * 2 1 4 4 C 1.38111 * 120.07697 * 179.97438 * 3 2 1 5 5 C 1.38874 * 119.92412 * 0.02562 * 4 3 2 6 6 N 1.39937 * 120.06934 * 179.97438 * 5 4 3 7 7 C 1.34529 * 126.68978 * 359.97438 * 6 5 4 8 8 O 1.21540 * 123.77031 * 0.03047 * 7 6 5 9 9 N 1.33786 * 112.45741 * 180.02562 * 7 6 5 10 10 C 1.46500 * 124.17753 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47520 * 90.01890 * 10 9 7 12 12 H 1.09001 * 109.46832 * 305.00072 * 11 10 9 13 13 C 1.47206 * 109.47168 * 64.99830 * 11 10 9 14 14 N 9.09132 * 163.33787 * 91.38503 * 2 1 3 15 15 C 1.52997 * 109.47232 * 184.99873 * 11 10 9 16 16 C 1.50697 * 109.47050 * 174.99758 * 15 11 10 17 17 H 1.08007 * 120.00134 * 0.02562 * 16 15 11 18 18 C 1.37882 * 119.99937 * 179.97438 * 16 15 11 19 19 N 1.31517 * 120.00060 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99925 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47381 * 89.99972 * 20 18 16 22 22 H 1.48505 * 109.46820 * 210.00035 * 20 18 16 23 23 H 1.48501 * 109.47179 * 329.99730 * 20 18 16 24 24 C 1.34772 * 111.64342 * 0.22266 * 9 7 6 25 25 O 1.21237 * 127.15354 * 179.73532 * 24 9 7 26 26 C 1.47310 * 126.68903 * 180.02562 * 6 5 4 27 27 H 1.09003 * 110.59829 * 61.28759 * 26 6 5 28 28 C 1.52993 * 110.60031 * 298.49542 * 26 6 5 29 29 C 1.38868 * 119.86083 * 0.25472 * 5 4 3 30 30 C 1.38115 * 119.92835 * 359.44584 * 29 5 4 31 31 H 1.09010 * 109.47185 * 89.99889 * 1 2 3 32 32 H 1.08999 * 109.47331 * 209.99704 * 1 2 3 33 33 H 1.09004 * 109.47138 * 330.00398 * 1 2 3 34 34 H 1.08002 * 119.96164 * 359.97438 * 3 2 1 35 35 H 1.07996 * 120.04022 * 180.02562 * 4 3 2 36 36 H 1.09004 * 109.46930 * 330.01489 * 10 9 7 37 37 H 1.09002 * 109.46951 * 210.02119 * 10 9 7 38 38 H 1.08994 * 109.47510 * 294.99830 * 15 11 10 39 39 H 1.09000 * 109.46818 * 55.00071 * 15 11 10 40 40 H 0.96996 * 120.00119 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.47258 * 59.99956 * 28 26 6 42 42 H 1.09000 * 109.47074 * 180.02562 * 28 26 6 43 43 H 1.09003 * 109.47302 * 300.00080 * 28 26 6 44 44 H 1.07997 * 120.03792 * 179.72049 * 29 5 4 45 45 H 1.08002 * 119.96504 * 180.31348 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1983 0.0000 4 6 3.5780 1.2018 0.0005 5 6 4.2738 0.0000 0.0005 6 7 5.6732 -0.0001 0.0005 7 6 6.4770 1.0787 0.0001 8 8 6.0705 2.2241 0.0001 9 7 7.7738 0.7497 -0.0004 10 6 8.8695 1.7222 -0.0015 11 6 9.2520 2.0613 1.4406 12 1 8.3685 2.4026 1.9801 13 6 9.7961 0.8623 2.0988 14 7 10.2165 -0.0630 2.6060 15 6 10.3090 3.1674 1.4412 16 6 10.5961 3.5871 2.8598 17 1 10.0769 3.1120 3.6791 18 6 11.5224 4.5768 3.1119 19 7 11.7733 4.9427 4.3500 20 14 12.4209 5.3979 1.6950 21 1 11.6489 6.5816 1.2387 22 1 13.7680 5.8298 2.1470 23 1 12.5603 4.4353 0.5729 24 6 7.9476 -0.5867 -0.0050 25 8 9.0002 -1.1882 -0.0110 26 6 6.5533 -1.1814 0.0000 27 1 6.3893 -1.7813 -0.8951 28 6 6.3270 -2.0218 1.2582 29 6 3.5780 -1.2018 -0.0054 30 6 2.1969 -1.1984 0.0004 31 1 -0.3634 0.0000 -1.0278 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6552 2.1327 -0.0004 35 1 4.1163 2.1381 0.0010 36 1 8.5501 2.6288 -0.5155 37 1 9.7316 1.2975 -0.5158 38 1 11.2240 2.7959 0.9800 39 1 9.9393 4.0235 0.8768 40 1 12.4247 5.6392 4.5273 41 1 5.2895 -2.3544 1.2913 42 1 6.9867 -2.8893 1.2392 43 1 6.5440 -1.4202 2.1409 44 1 4.1162 -2.1381 -0.0099 45 1 1.6551 -2.1328 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024087646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:16 Heat of formation + Delta-G solvation = 14.667768 kcal Electronic energy + Delta-G solvation = -29416.245236 eV Core-core repulsion = 25399.968934 eV Total energy + Delta-G solvation = -4016.276302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.90432 -39.78400 -38.70228 -37.33120 -36.58449 -35.39587 -33.86174 -32.80093 -31.91931 -31.39068 -30.64173 -28.43458 -26.64666 -25.22896 -24.22797 -23.27692 -22.63006 -21.59883 -21.36021 -20.29490 -18.31387 -17.73498 -16.99824 -16.87979 -16.54895 -16.23310 -15.95056 -15.75613 -14.98612 -14.72919 -14.65002 -14.29325 -14.16159 -14.00470 -13.91972 -13.73834 -13.54726 -13.30611 -12.84512 -12.66168 -12.57576 -12.51228 -12.41386 -12.22985 -12.10534 -11.88028 -11.67176 -11.47710 -11.31558 -11.01761 -10.79345 -10.54607 -10.50921 -10.31836 -10.19368 -9.97005 -9.61342 -9.37439 -9.21839 -8.64221 -8.14620 -6.13173 -4.14720 0.93433 1.13346 1.51163 1.72298 2.56500 2.77793 3.25263 3.33815 3.33989 3.49230 3.53579 3.55907 3.63166 4.18224 4.36072 4.43202 4.51540 4.53791 4.61325 4.64994 4.82809 5.05931 5.08145 5.10775 5.13927 5.16301 5.21026 5.27080 5.30500 5.33361 5.38108 5.52682 5.62083 5.66830 5.70329 5.82998 6.04007 6.07315 6.12917 6.23091 6.26292 6.38017 6.76618 6.82882 6.90938 7.03046 7.16855 7.57228 7.80743 8.29722 8.38326 8.88992 9.45610 10.99804 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015918 B = 0.002882 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.630229 B = 9712.891550 C =10658.202412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.115 4.115 3 C -0.088 4.088 4 C -0.147 4.147 5 C 0.188 3.812 6 N -0.563 5.563 7 C 0.703 3.297 8 O -0.515 6.515 9 N -0.574 5.574 10 C 0.121 3.879 11 C 0.003 3.997 12 H 0.113 0.887 13 C 0.226 3.774 14 N -0.444 5.444 15 C -0.001 4.001 16 C -0.529 4.529 17 H 0.074 0.926 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.287 1.287 23 H -0.263 1.263 24 C 0.522 3.478 25 O -0.444 6.444 26 C 0.088 3.912 27 H 0.132 0.868 28 C -0.157 4.157 29 C -0.157 4.157 30 C -0.091 4.091 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.128 0.872 35 H 0.157 0.843 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.029 0.971 39 H 0.039 0.961 40 H 0.265 0.735 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.129 0.871 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.708 -12.440 -13.800 28.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.116 4.116 3 C -0.106 4.106 4 C -0.167 4.167 5 C 0.095 3.905 6 N -0.291 5.291 7 C 0.406 3.594 8 O -0.387 6.387 9 N -0.319 5.319 10 C 0.000 4.000 11 C -0.020 4.020 12 H 0.131 0.869 13 C -0.092 4.092 14 N -0.120 5.120 15 C -0.040 4.040 16 C -0.567 4.567 17 H 0.092 0.908 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.188 1.188 24 C 0.308 3.692 25 O -0.311 6.311 26 C -0.019 4.019 27 H 0.149 0.851 28 C -0.215 4.215 29 C -0.178 4.178 30 C -0.110 4.110 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.146 0.854 35 H 0.174 0.826 36 H 0.137 0.863 37 H 0.122 0.878 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.147 0.853 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.537 -13.364 -12.921 27.700 hybrid contribution 0.567 0.893 -0.666 1.250 sum -19.970 -12.471 -13.587 27.183 Atomic orbital electron populations 1.20745 0.91135 1.02720 1.02162 1.19921 0.96235 0.93152 1.02247 1.20949 0.93230 0.97793 0.98648 1.21548 0.94523 0.98223 1.02398 1.17388 0.78152 0.95012 0.99940 1.45031 1.04156 1.06678 1.73250 1.15797 0.80818 0.84925 0.77877 1.90922 1.76228 1.18414 1.53155 1.46568 1.07857 1.09445 1.68042 1.22083 0.87426 0.92397 0.98080 1.19360 1.01489 0.89104 0.92036 0.86934 1.28842 0.93246 0.93459 0.93625 1.81025 1.09124 1.12767 1.09072 1.19620 0.92749 0.91845 0.99823 1.20942 1.24191 1.20876 0.90660 0.90820 1.24978 0.96179 0.96287 0.95575 1.69899 1.34151 1.30298 1.18942 0.86817 0.79495 0.80257 0.83018 1.19871 1.21243 1.18771 1.20730 0.91022 0.82318 0.75142 1.90878 1.30211 1.65836 1.44217 1.22270 0.87012 0.88871 1.03696 0.85100 1.22085 1.04227 1.00194 0.94985 1.20782 0.94532 0.96040 1.06426 1.20778 0.92920 0.97756 0.99523 0.91375 0.91697 0.91573 0.85437 0.82606 0.86332 0.87818 0.95279 0.94302 0.92475 0.89710 0.89274 0.91015 0.85315 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.01 36.00 0.36 -0.25 16 2 C -0.11 -0.91 5.88 -104.59 -0.62 -1.52 16 3 C -0.09 -0.80 9.69 -39.61 -0.38 -1.18 16 4 C -0.15 -1.64 9.36 -39.39 -0.37 -2.01 16 5 C 0.19 2.00 6.55 -83.69 -0.55 1.45 16 6 N -0.56 -6.34 2.95 -112.26 -0.33 -6.67 16 7 C 0.70 9.62 8.23 -88.02 -0.72 8.89 16 8 O -0.52 -8.10 14.45 5.33 0.08 -8.02 16 9 N -0.57 -7.84 2.49 -120.73 -0.30 -8.14 16 10 C 0.12 1.72 5.13 -4.04 -0.02 1.70 16 11 C 0.00 0.05 2.42 -93.41 -0.23 -0.18 16 12 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 13 C 0.23 4.71 12.40 -20.76 -0.26 4.45 16 14 N -0.44 -10.04 18.54 42.15 0.78 -9.26 16 15 C 0.00 -0.03 3.49 -27.89 -0.10 -0.13 16 16 C -0.53 -14.30 9.15 -34.44 -0.32 -14.62 16 17 H 0.07 2.20 7.84 -52.48 -0.41 1.79 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 19 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 20 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 24 C 0.52 6.89 6.95 -10.55 -0.07 6.82 16 25 O -0.44 -7.11 17.11 5.59 0.10 -7.02 16 26 C 0.09 0.85 3.33 -68.21 -0.23 0.62 16 27 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 28 C -0.16 -1.35 9.29 37.15 0.35 -1.00 16 29 C -0.16 -1.29 8.72 -39.39 -0.34 -1.63 16 30 C -0.09 -0.68 9.69 -39.61 -0.38 -1.06 16 31 H 0.07 0.33 8.14 -51.92 -0.42 -0.10 16 32 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 33 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 34 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.16 2.02 5.41 -52.49 -0.28 1.73 16 36 H 0.12 1.47 7.86 -51.93 -0.41 1.06 16 37 H 0.10 1.38 8.00 -51.93 -0.42 0.97 16 38 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 39 H 0.04 0.76 7.57 -51.93 -0.39 0.37 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.08 0.55 5.57 -51.93 -0.29 0.27 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.13 0.79 5.75 -52.49 -0.30 0.49 16 45 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -34.22 379.96 -7.67 -41.89 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.84 Total: -0.38 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -3.98 Total: 2.28 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.92 Total: -50.38 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.17 Total: -15.03 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.22 -7.67 -41.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024087646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.553 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds