Wall clock time and date at job start Tue Mar 31 2020 05:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.40569 * 120.61062 * 344.71472 * 3 2 1 5 5 N 1.38071 * 119.46705 * 0.03864 * 4 3 2 6 6 N 1.32361 * 121.07208 * 180.02562 * 4 3 2 7 7 C 1.32439 * 122.53224 * 359.97438 * 6 4 3 8 8 N 1.38121 * 119.46451 * 179.97438 * 7 6 4 9 9 C 1.40024 * 120.00099 * 5.55329 * 8 7 6 10 10 C 1.38822 * 120.05802 * 23.43843 * 9 8 7 11 11 C 1.38148 * 119.97660 * 179.74558 * 10 9 8 12 12 C 1.38478 * 120.08476 * 0.52913 * 11 10 9 13 13 F 1.35103 * 119.94382 * 179.72284 * 12 11 10 14 14 C 1.38467 * 120.11433 * 359.74369 * 12 11 10 15 15 C 1.38294 * 120.02065 * 359.97438 * 14 12 11 16 16 F 1.35105 * 120.03932 * 180.02562 * 15 14 12 17 17 C 1.40534 * 121.06910 * 0.02562 * 7 6 4 18 18 C 1.43194 * 120.61531 * 180.26803 * 17 7 6 19 19 N 5.98346 * 146.56610 * 164.55507 * 2 1 3 20 20 C 1.42282 * 120.60944 * 164.72817 * 3 2 1 21 21 C 1.40452 * 121.11599 * 0.02562 * 20 3 2 22 22 H 1.07998 * 119.99904 * 315.63345 * 21 20 3 23 23 C 1.40520 * 120.00137 * 135.62763 * 21 20 3 24 24 N 1.30494 * 119.99930 * 341.11124 * 23 21 20 25 25 Si 1.86800 * 119.99728 * 161.10533 * 23 21 20 26 26 H 1.48491 * 109.47248 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46889 * 120.00558 * 25 23 21 28 28 H 1.48501 * 109.46890 * 239.99965 * 25 23 21 29 29 H 0.97004 * 120.00094 * 0.02562 * 5 4 3 30 30 H 0.96999 * 120.00492 * 180.02562 * 5 4 3 31 31 H 0.97004 * 119.99550 * 185.55100 * 8 7 6 32 32 H 1.08002 * 120.00882 * 0.02562 * 10 9 8 33 33 H 1.07995 * 119.95388 * 180.24770 * 11 10 9 34 34 H 1.07998 * 119.98894 * 180.02562 * 14 12 11 35 35 H 0.97002 * 119.99504 * 185.07621 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2842 -1.1660 0.3189 5 7 2.5960 -2.3209 0.6336 6 7 4.6078 -1.1756 0.3222 7 6 5.3285 -0.1038 0.0294 8 7 6.7072 -0.1849 0.0529 9 6 7.3323 -1.4189 0.2697 10 6 6.6596 -2.5990 -0.0168 11 6 7.2799 -3.8155 0.1928 12 6 8.5682 -3.8597 0.6986 13 9 9.1701 -5.0511 0.9077 14 6 9.2405 -2.6850 0.9909 15 6 8.6261 -1.4646 0.7774 16 9 9.2819 -0.3182 1.0620 17 6 4.7133 1.1150 -0.3037 18 6 5.5020 2.2664 -0.6242 19 7 6.1293 3.1777 -0.8780 20 6 3.2919 1.1823 -0.3225 21 6 2.6260 2.3754 -0.6478 22 1 1.7812 2.3562 -1.3203 23 6 3.0591 3.5940 -0.0983 24 7 3.8105 3.5982 0.9686 25 14 2.5591 5.2079 -0.8951 26 1 1.7117 4.9319 -2.0828 27 1 1.7931 6.0249 0.0801 28 1 3.7749 5.9499 -1.3154 29 1 1.6260 -2.3229 0.6331 30 1 3.0825 -3.1303 0.8553 31 1 7.2422 0.6131 -0.0808 32 1 5.6533 -2.5659 -0.4076 33 1 6.7577 -4.7332 -0.0339 34 1 10.2454 -2.7219 1.3850 35 1 4.0486 4.4385 1.3907 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025607281.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:53 Heat of formation + Delta-G solvation = 30.235941 kcal Electronic energy + Delta-G solvation = -28051.282816 eV Core-core repulsion = 23685.220647 eV Total energy + Delta-G solvation = -4366.062169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.078 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.89801 -48.87329 -40.09144 -38.64502 -36.43063 -35.79704 -35.03075 -34.29401 -33.02694 -31.38566 -30.69833 -29.63684 -27.77069 -26.65267 -23.95198 -22.73258 -22.47431 -21.54081 -19.30658 -18.41558 -18.37966 -17.83545 -17.17595 -16.44342 -16.34629 -16.01108 -15.85713 -15.53142 -15.22724 -15.19033 -14.55632 -14.48765 -14.33556 -14.15783 -13.69686 -13.10633 -13.06377 -12.80170 -12.44353 -12.32303 -12.26423 -12.08743 -11.94094 -11.86882 -11.82065 -11.44159 -11.36806 -11.20968 -11.07276 -10.84131 -10.49490 -9.71632 -9.44089 -9.06498 -8.74450 -8.43541 -7.87099 -7.32211 -6.84057 -5.19647 0.96320 1.11816 1.85512 2.28403 2.89319 2.94228 2.98650 3.09996 3.46540 3.64483 3.66260 3.73857 3.89067 3.94470 3.99006 4.27866 4.43453 4.45305 4.68863 4.88222 5.09856 5.16989 5.26728 5.29360 5.34448 5.63661 5.88141 5.90658 6.08022 6.20064 6.34416 6.41078 6.57920 6.75139 6.84551 7.07024 7.23287 7.42930 7.66057 7.86036 7.89700 8.07821 8.22401 8.58697 8.75022 8.88645 9.63163 Molecular weight = 341.08amu Principal moments of inertia in cm(-1) A = 0.013606 B = 0.003947 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.410663 B = 7092.712887 C = 8915.881403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.307 3.693 3 C -0.274 4.274 4 C 0.511 3.489 5 N -0.846 5.846 6 N -0.641 5.641 7 C 0.488 3.512 8 N -0.651 5.651 9 C 0.149 3.851 10 C -0.079 4.079 11 C -0.139 4.139 12 C 0.085 3.915 13 F -0.141 7.141 14 C -0.168 4.168 15 C 0.074 3.926 16 F -0.134 7.134 17 C -0.226 4.226 18 C 0.318 3.682 19 N -0.495 5.495 20 C 0.254 3.746 21 C -0.444 4.444 22 H 0.101 0.899 23 C 0.085 3.915 24 N -0.746 5.746 25 Si 0.906 3.094 26 H -0.253 1.253 27 H -0.267 1.267 28 H -0.262 1.262 29 H 0.406 0.594 30 H 0.400 0.600 31 H 0.421 0.579 32 H 0.182 0.818 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.255 -11.101 -0.010 12.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.004 4.004 3 C -0.290 4.290 4 C 0.272 3.728 5 N -0.388 5.388 6 N -0.372 5.372 7 C 0.255 3.745 8 N -0.273 5.273 9 C 0.049 3.951 10 C -0.100 4.100 11 C -0.159 4.159 12 C 0.065 3.935 13 F -0.120 7.120 14 C -0.188 4.188 15 C 0.051 3.949 16 F -0.113 7.113 17 C -0.241 4.241 18 C 0.007 3.993 19 N -0.175 5.175 20 C 0.243 3.757 21 C -0.472 4.472 22 H 0.119 0.881 23 C -0.142 4.142 24 N -0.367 5.367 25 Si 0.729 3.271 26 H -0.176 1.176 27 H -0.192 1.192 28 H -0.187 1.187 29 H 0.236 0.764 30 H 0.229 0.771 31 H 0.259 0.741 32 H 0.199 0.801 33 H 0.158 0.842 34 H 0.162 0.838 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.078 -10.325 -0.017 11.981 hybrid contribution -0.015 1.328 0.101 1.332 sum 6.062 -8.996 0.084 10.848 Atomic orbital electron populations 1.81086 1.12302 1.09494 1.15036 1.25215 0.92096 0.91913 0.91171 1.16099 0.84687 0.96539 1.31635 1.17467 0.86767 0.84529 0.84086 1.42099 1.08962 1.10694 1.77030 1.66282 1.05097 1.28743 1.37057 1.17359 0.82174 0.88273 0.86643 1.41872 1.03734 1.08154 1.73574 1.17876 0.90777 0.87631 0.98809 1.21643 1.02218 0.88269 0.97876 1.21130 0.93223 0.99566 1.01956 1.17243 0.92359 0.80132 1.03812 1.91483 1.83555 1.43882 1.93062 1.20693 1.02019 0.89918 1.06192 1.17006 0.91342 0.82023 1.04558 1.91501 1.80661 1.47590 1.91546 1.16014 0.91929 0.88300 1.27896 1.24896 0.91368 0.92104 0.90956 1.80972 1.11935 1.09982 1.14563 1.16792 0.87760 0.90252 0.80937 1.19645 1.13318 0.90034 1.24199 0.88084 1.26021 0.92428 1.01829 0.93918 1.69515 1.23032 1.31231 1.12917 0.86218 0.79966 0.80119 0.80811 1.17610 1.19221 1.18659 0.76431 0.77115 0.74112 0.80131 0.84204 0.83821 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -10.30 18.54 41.83 0.78 -9.52 16 2 C 0.31 6.07 13.21 -22.48 -0.30 5.78 16 3 C -0.27 -5.30 5.84 -105.54 -0.62 -5.92 16 4 C 0.51 8.40 7.74 -155.41 -1.20 7.20 16 5 N -0.85 -10.45 8.96 31.23 0.28 -10.17 16 6 N -0.64 -10.50 6.35 -11.31 -0.07 -10.57 16 7 C 0.49 8.78 7.30 -155.31 -1.13 7.65 16 8 N -0.65 -10.52 5.35 -9.78 -0.05 -10.58 16 9 C 0.15 2.14 6.47 -83.59 -0.54 1.60 16 10 C -0.08 -1.00 8.65 -39.40 -0.34 -1.35 16 11 C -0.14 -1.52 10.02 -39.53 -0.40 -1.91 16 12 C 0.09 0.99 7.30 -39.41 -0.29 0.70 16 13 F -0.14 -1.65 17.26 2.25 0.04 -1.61 16 14 C -0.17 -1.99 10.00 -39.48 -0.39 -2.38 16 15 C 0.07 1.00 7.31 -39.26 -0.29 0.72 16 16 F -0.13 -1.95 16.80 2.25 0.04 -1.91 16 17 C -0.23 -4.66 5.51 -105.54 -0.58 -5.24 16 18 C 0.32 6.92 10.48 -22.51 -0.24 6.68 16 19 N -0.50 -11.21 18.52 41.80 0.77 -10.43 16 20 C 0.25 5.45 5.33 -105.94 -0.56 4.89 16 21 C -0.44 -10.01 7.91 -37.89 -0.30 -10.31 16 22 H 0.10 2.26 7.84 -52.49 -0.41 1.85 16 23 C 0.08 1.89 4.18 -17.26 -0.07 1.82 16 24 N -0.75 -17.21 11.28 55.58 0.63 -16.58 16 25 Si 0.91 17.78 29.61 -169.99 -5.03 12.75 16 26 H -0.25 -4.87 7.11 56.52 0.40 -4.47 16 27 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 28 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 29 H 0.41 4.84 7.62 -40.82 -0.31 4.53 16 30 H 0.40 3.91 8.94 -40.82 -0.37 3.54 16 31 H 0.42 6.89 7.24 -40.82 -0.30 6.59 16 32 H 0.18 2.36 5.44 -52.49 -0.29 2.08 16 33 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.30 6.40 8.30 -40.82 -0.34 6.07 16 LS Contribution 332.73 15.07 5.01 5.01 Total: -1.00 -24.86 332.73 -6.51 -31.37 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -1.65 Total: 12.33 kcal Atomic # 6 Polarization: 17.17 SS G_CDS: -7.25 Total: 9.92 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: 2.33 Total: -67.86 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.08 Total: -3.52 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -24.86 -6.51 -31.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025607281.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.606 kcal (2) G-P(sol) polarization free energy of solvation -24.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds