Wall clock time and date at job start Tue Mar 31 2020 05:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 119.99732 * 2 1 4 4 H 1.48501 * 109.47197 * 239.99624 * 3 2 1 5 5 H 1.48492 * 109.47447 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47257 * 120.00020 * 3 2 1 7 7 C 1.37879 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99795 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99949 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00060 * 179.97438 * 10 9 7 12 12 O 1.21291 * 120.00015 * 0.02562 * 11 10 9 13 13 C 1.50702 * 120.00294 * 180.02562 * 11 10 9 14 14 N 1.46901 * 109.47093 * 185.85585 * 13 11 10 15 15 C 1.46891 * 111.00389 * 76.23948 * 14 13 11 16 16 C 1.50706 * 109.47112 * 190.00109 * 15 14 13 17 17 C 1.38457 * 120.01463 * 269.72596 * 16 15 14 18 18 F 1.35099 * 120.02325 * 359.97259 * 17 16 15 19 19 C 1.38453 * 119.95856 * 179.74294 * 17 16 15 20 20 C 1.38225 * 120.00036 * 0.53257 * 19 17 16 21 21 C 1.38205 * 120.03912 * 359.71860 * 20 19 17 22 22 C 1.38284 * 120.02163 * 90.00028 * 16 15 14 23 23 Cl 1.73601 * 120.00109 * 359.97438 * 22 16 15 24 24 C 1.46907 * 110.99384 * 200.19573 * 14 13 11 25 25 C 1.53003 * 117.49768 * 137.58930 * 24 14 13 26 26 C 1.52991 * 117.50021 * 68.93042 * 24 14 13 27 27 H 0.96998 * 120.00418 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47624 * 59.99355 * 9 7 2 29 29 H 1.09003 * 109.46701 * 299.99501 * 9 7 2 30 30 H 0.97001 * 120.00281 * 359.97438 * 10 9 7 31 31 H 1.09004 * 109.46630 * 305.84801 * 13 11 10 32 32 H 1.08997 * 109.47093 * 65.85143 * 13 11 10 33 33 H 1.09004 * 109.46989 * 309.99676 * 15 14 13 34 34 H 1.08998 * 109.47235 * 70.00334 * 15 14 13 35 35 H 1.08003 * 119.99978 * 180.25064 * 19 17 16 36 36 H 1.07993 * 119.97829 * 179.70300 * 20 19 17 37 37 H 1.07993 * 119.98204 * 180.02562 * 21 20 19 38 38 H 1.08997 * 115.54620 * 283.25411 * 24 14 13 39 39 H 1.09005 * 117.49595 * 359.97438 * 25 24 14 40 40 H 1.08998 * 117.49858 * 145.01358 * 25 24 14 41 41 H 1.09003 * 117.49888 * 214.97664 * 26 24 14 42 42 H 1.09001 * 117.50393 * 359.97438 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5614 -5.1050 0.0011 13 6 2.7332 -6.0288 0.0016 14 7 2.0042 -7.2964 -0.1392 15 6 1.5643 -7.4995 -1.5259 16 6 0.6191 -8.6717 -1.5864 17 6 1.1108 -9.9473 -1.8059 18 9 2.4381 -10.1417 -1.9664 19 6 0.2420 -11.0241 -1.8560 20 6 -1.1165 -10.8240 -1.6980 21 6 -1.6079 -9.5500 -1.4841 22 6 -0.7403 -8.4733 -1.4285 23 17 -1.3586 -6.8735 -1.1597 24 6 2.8193 -8.4267 0.3256 25 6 2.1253 -9.4988 1.1683 26 6 3.1042 -8.5227 1.8257 27 1 -0.4851 0.8400 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8904 30 1 3.1568 -3.4354 0.0002 31 1 3.4268 -5.9142 -0.8314 32 1 3.2888 -6.0313 0.9394 33 1 1.0548 -6.6034 -1.8804 34 1 2.4307 -7.6985 -2.1565 35 1 0.6253 -12.0199 -2.0231 36 1 -1.7944 -11.6635 -1.7419 37 1 -2.6694 -9.3948 -1.3603 38 1 3.6034 -8.7531 -0.3576 39 1 1.0641 -9.3650 1.3782 40 1 2.4532 -10.5303 1.0398 41 1 4.0757 -8.9125 2.1295 42 1 2.6872 -7.7469 2.4678 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027371128.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:58 Heat of formation + Delta-G solvation = -23.895723 kcal Electronic energy + Delta-G solvation = -27449.378227 eV Core-core repulsion = 23370.962442 eV Total energy + Delta-G solvation = -4078.415784 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.10239 -39.71813 -38.79615 -37.59428 -36.12868 -34.51219 -33.92517 -32.28367 -31.68625 -30.50616 -28.21241 -26.54916 -24.93489 -22.97892 -22.52816 -22.25863 -21.92658 -20.30312 -19.46302 -17.89618 -17.09846 -16.80663 -16.69699 -16.02558 -15.75397 -15.50260 -15.23621 -14.72991 -14.69707 -14.61388 -14.34251 -13.81051 -13.71613 -13.51004 -12.99720 -12.82521 -12.59185 -12.37711 -12.08638 -11.88300 -11.85312 -11.50752 -11.34918 -11.18109 -11.15687 -10.97417 -10.80971 -10.58663 -10.34479 -10.27422 -10.22034 -9.37278 -9.00751 -8.85997 -8.73825 -8.68542 -8.20438 -7.76346 -6.13926 -4.20472 0.89521 0.90295 2.33304 3.21197 3.26350 3.31282 3.32626 3.51704 3.64489 3.79387 4.07472 4.28879 4.43295 4.51720 4.61721 4.69208 4.92431 4.96506 5.02191 5.16277 5.21896 5.25858 5.27655 5.42960 5.55609 5.62189 5.66445 5.68602 5.71622 5.78181 5.87368 5.96011 6.02425 6.12180 6.18678 6.56477 6.90427 7.12130 7.37884 7.53874 7.57908 7.72899 8.01560 8.71921 8.85021 9.23764 9.46885 10.96165 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.003009 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.047306 B = 9303.002944 C =10314.708961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.255 3.745 10 N -0.719 5.719 11 C 0.493 3.507 12 O -0.521 6.521 13 C 0.038 3.962 14 N -0.479 5.479 15 C 0.097 3.903 16 C -0.098 4.098 17 C 0.121 3.879 18 F -0.135 7.135 19 C -0.161 4.161 20 C -0.082 4.082 21 C -0.130 4.130 22 C 0.005 3.995 23 Cl -0.009 7.009 24 C 0.002 3.998 25 C -0.158 4.158 26 C -0.168 4.168 27 H 0.266 0.734 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.387 0.613 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.044 0.956 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 -23.852 -2.719 24.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.079 0.921 9 C 0.134 3.866 10 N -0.369 5.369 11 C 0.276 3.724 12 O -0.397 6.397 13 C -0.093 4.093 14 N -0.203 5.203 15 C -0.030 4.030 16 C -0.100 4.100 17 C 0.101 3.899 18 F -0.113 7.113 19 C -0.180 4.180 20 C -0.101 4.101 21 C -0.149 4.149 22 C -0.023 4.023 23 Cl 0.021 6.979 24 C -0.107 4.107 25 C -0.196 4.196 26 C -0.206 4.206 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.219 0.781 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.062 0.938 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.513 -23.667 -2.406 23.837 hybrid contribution 1.851 1.040 -0.488 2.179 sum 3.364 -22.627 -2.894 23.058 Atomic orbital electron populations 1.69965 1.06079 1.27322 1.48961 1.24943 0.94892 0.99377 0.94785 0.86500 0.79432 0.82459 0.78655 1.20119 1.21105 1.20095 1.21210 0.93191 0.90601 1.53098 0.92069 1.19006 0.88211 0.81854 0.97484 1.46445 1.10871 1.06122 1.73470 1.20311 0.89821 0.83862 0.78395 1.90699 1.15997 1.84391 1.48646 1.22001 0.95180 0.89166 1.02927 1.61328 1.38585 0.99770 1.20581 1.21016 0.96137 0.96777 0.89117 1.19541 0.93766 0.93911 1.02755 1.17321 0.77643 0.93161 1.01782 1.91477 1.31238 1.95706 1.92880 1.21109 0.93673 0.98388 1.04823 1.20900 0.94446 0.96817 0.97906 1.21165 1.00256 0.91425 1.02044 1.20854 0.92421 0.89520 0.99508 1.98516 1.86671 1.19013 1.93689 1.22469 0.98759 0.95640 0.93833 1.22982 0.99155 0.94321 1.03152 1.23027 1.00408 1.02869 0.94283 0.92458 0.95805 0.95725 0.78088 0.92437 0.88184 0.87695 0.93773 0.84633 0.84503 0.84492 0.89461 0.88330 0.89249 0.88839 0.88079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.26 6.72 5.43 -5.19 -0.03 6.69 16 10 N -0.72 -14.87 5.55 -61.47 -0.34 -15.21 16 11 C 0.49 9.50 7.38 -10.98 -0.08 9.42 16 12 O -0.52 -11.68 13.43 5.55 0.07 -11.61 16 13 C 0.04 0.55 5.45 -4.97 -0.03 0.52 16 14 N -0.48 -6.82 4.13 -229.52 -0.95 -7.76 16 15 C 0.10 1.37 4.22 -4.98 -0.02 1.35 16 16 C -0.10 -1.28 4.76 -104.52 -0.50 -1.78 16 17 C 0.12 1.37 5.88 -39.42 -0.23 1.14 16 18 F -0.13 -1.55 14.91 2.25 0.03 -1.52 16 19 C -0.16 -1.46 10.03 -39.51 -0.40 -1.86 16 20 C -0.08 -0.69 10.04 -39.60 -0.40 -1.09 16 21 C -0.13 -1.35 9.83 -39.54 -0.39 -1.74 16 22 C 0.00 0.06 6.31 -39.51 -0.25 -0.19 16 23 Cl -0.01 -0.14 25.21 -51.86 -1.31 -1.45 16 24 C 0.00 0.02 3.37 -67.71 -0.23 -0.21 16 25 C -0.16 -1.75 9.19 -26.69 -0.25 -2.00 16 26 C -0.17 -1.79 9.72 -26.70 -0.26 -2.05 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 28 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.39 6.91 8.32 -40.82 -0.34 6.57 16 31 H 0.06 0.73 7.99 -51.93 -0.41 0.32 16 32 H 0.10 1.29 7.34 -51.93 -0.38 0.90 16 33 H 0.10 1.73 5.70 -51.93 -0.30 1.44 16 34 H 0.04 0.58 7.61 -51.93 -0.40 0.19 16 35 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.09 1.01 7.44 -51.93 -0.39 0.62 16 39 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.10 1.20 8.12 -51.93 -0.42 0.78 16 LS Contribution 367.04 15.07 5.53 5.53 Total: -1.00 -31.52 367.04 -10.26 -41.78 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.55 Total: 4.94 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -3.47 Total: -5.15 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.55 Total: -48.46 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.07 Total: -11.61 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.03 Total: -1.52 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.31 Total: -1.45 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.52 -10.26 -41.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027371128.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.882 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds