Wall clock time and date at job start Tue Mar 31 2020 04:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34474 * 125.36540 * 2 1 4 4 C 1.46721 * 106.51427 * 180.02562 * 3 2 1 5 5 C 1.46330 * 127.05473 * 180.02562 * 4 3 2 6 6 N 1.31018 * 119.99877 * 179.97438 * 5 4 3 7 7 N 1.40096 * 120.00384 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00305 * 180.02562 * 7 6 5 9 9 O 1.22062 * 119.99939 * 359.97438 * 8 7 6 10 10 C 1.40085 * 119.99911 * 180.02562 * 8 7 6 11 11 H 1.07999 * 120.00206 * 359.97438 * 10 8 7 12 12 C 1.40122 * 120.00094 * 180.02562 * 10 8 7 13 13 N 1.30652 * 119.99641 * 359.97438 * 12 10 8 14 14 Si 1.86797 * 120.00178 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47192 * 89.99753 * 14 12 10 16 16 H 1.48500 * 109.47073 * 209.99923 * 14 12 10 17 17 H 1.48503 * 109.47140 * 329.99587 * 14 12 10 18 18 C 1.39189 * 105.88615 * 359.97438 * 4 3 2 19 19 C 1.50705 * 126.00335 * 179.97438 * 18 4 3 20 20 N 1.34832 * 107.99357 * 0.02562 * 18 4 3 21 21 C 1.40068 * 124.83370 * 180.26015 * 20 18 4 22 22 C 1.38871 * 120.06910 * 64.44789 * 21 20 18 23 23 C 1.38105 * 119.92860 * 179.71896 * 22 21 20 24 24 C 1.50700 * 119.96697 * 180.27394 * 23 22 21 25 25 C 1.38294 * 120.07078 * 0.57607 * 23 22 21 26 26 C 1.38288 * 120.13809 * 359.68085 * 25 23 22 27 27 C 1.50701 * 119.96509 * 180.02562 * 26 25 23 28 28 C 1.38109 * 120.06939 * 0.03825 * 26 25 23 29 29 H 1.09007 * 109.47237 * 270.00045 * 1 2 3 30 30 H 1.09000 * 109.47250 * 29.99459 * 1 2 3 31 31 H 1.09001 * 109.47945 * 150.00104 * 1 2 3 32 32 H 1.08003 * 126.74308 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.00319 * 359.97123 * 5 4 3 34 34 H 0.97000 * 119.99504 * 359.97438 * 7 6 5 35 35 H 0.97007 * 120.00125 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.46929 * 270.02802 * 19 18 4 37 37 H 1.08994 * 109.46993 * 30.03004 * 19 18 4 38 38 H 1.08997 * 109.47168 * 150.03236 * 19 18 4 39 39 H 1.07998 * 120.03582 * 359.97438 * 22 21 20 40 40 H 1.08990 * 109.47536 * 270.30101 * 24 23 22 41 41 H 1.09001 * 109.46728 * 30.30425 * 24 23 22 42 42 H 1.09001 * 109.47369 * 150.29644 * 24 23 22 43 43 H 1.07997 * 119.92823 * 179.69512 * 25 23 22 44 44 H 1.09003 * 109.46673 * 270.01624 * 27 26 25 45 45 H 1.08997 * 109.47190 * 30.01990 * 27 26 25 46 46 H 1.08996 * 109.47003 * 150.02510 * 27 26 25 47 47 H 1.08003 * 120.03426 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2853 1.0966 0.0000 4 6 3.6738 0.6225 -0.0006 5 6 4.8856 1.4428 -0.0003 6 7 6.0641 0.8704 -0.0005 7 7 7.2243 1.6556 -0.0007 8 6 8.4366 1.0667 -0.0014 9 8 8.5237 -0.1508 -0.0013 10 6 9.5967 1.8519 -0.0011 11 1 9.5197 2.9292 -0.0008 12 6 10.8571 1.2397 -0.0024 13 7 10.9503 -0.0635 -0.0033 14 14 12.4041 2.2868 -0.0013 15 1 12.8144 2.5623 1.3991 16 1 13.4934 1.5611 -0.7026 17 1 12.1342 3.5694 -0.6995 18 6 3.6018 -0.7675 -0.0004 19 6 4.7735 -1.7153 -0.0013 20 7 2.2996 -1.1171 -0.0002 21 6 1.8250 -2.4349 0.0053 22 6 2.0758 -3.2602 1.0936 23 6 1.6015 -4.5573 1.0985 24 6 1.8678 -5.4517 2.2818 25 6 0.8878 -5.0382 0.0160 26 6 0.6410 -4.2205 -1.0716 27 6 -0.1377 -4.7484 -2.2489 28 6 1.1076 -2.9207 -1.0801 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3635 -0.8900 -0.5138 32 1 1.9535 2.1244 0.0004 33 1 4.8085 2.5200 -0.0001 34 1 7.1551 2.6231 -0.0012 35 1 11.8229 -0.4874 -0.0038 36 1 5.0553 -1.9435 -1.0292 37 1 5.6160 -1.2519 0.5121 38 1 4.4966 -2.6358 0.5124 39 1 2.6375 -2.8869 1.9371 40 1 2.8069 -5.9840 2.1309 41 1 1.9340 -4.8473 3.1864 42 1 1.0550 -6.1708 2.3840 43 1 0.5222 -6.0544 0.0201 44 1 0.5494 -5.1926 -2.9692 45 1 -0.8449 -5.5043 -1.9073 46 1 -0.6807 -3.9301 -2.7218 47 1 0.9149 -2.2827 -1.9299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028216551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:42 Heat of formation + Delta-G solvation = 63.492133 kcal Electronic energy + Delta-G solvation = -28094.905561 eV Core-core repulsion = 24243.891015 eV Total energy + Delta-G solvation = -3851.014546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.48172 -39.31357 -37.41983 -35.14890 -33.91029 -33.54893 -32.66502 -32.30004 -30.61547 -28.99572 -28.87643 -27.51611 -27.04270 -26.56221 -24.22534 -23.17327 -21.55042 -21.05235 -19.84419 -19.62447 -18.32457 -17.04932 -16.68196 -16.39071 -16.26295 -15.52848 -15.42799 -14.53991 -14.30131 -14.15378 -13.98178 -13.58877 -13.51809 -13.29304 -13.19918 -13.13051 -12.93443 -12.85226 -12.78538 -12.57176 -12.41621 -12.07268 -11.94569 -11.84061 -11.73430 -11.61356 -11.36483 -11.35491 -11.17330 -11.10481 -10.75841 -10.55461 -10.31180 -9.21438 -9.13067 -8.94211 -8.88630 -8.42249 -7.86513 -7.63774 -6.79515 -6.31630 -4.86585 0.87852 1.02500 2.09685 2.52849 2.91749 3.08612 3.15004 3.18926 3.33701 3.81790 3.90611 4.23439 4.42909 4.49627 4.53421 4.68047 4.83446 4.95704 5.01525 5.05473 5.17192 5.22982 5.27419 5.33625 5.35700 5.40313 5.48061 5.50831 5.54980 5.66145 5.73726 5.81250 5.84159 5.89246 5.91554 6.08176 6.12149 6.15893 6.22203 6.25591 6.27092 6.58326 6.59187 6.79983 6.95989 7.22654 7.27890 7.43994 7.67637 7.98517 8.10854 8.83979 8.93518 9.46715 10.47153 10.78738 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015583 B = 0.002337 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.387893 B =11979.141017 C =13032.849047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.004 3.996 3 C -0.164 4.164 4 C -0.123 4.123 5 C 0.068 3.932 6 N -0.210 5.210 7 N -0.597 5.597 8 C 0.562 3.438 9 O -0.558 6.558 10 C -0.538 4.538 11 H 0.069 0.931 12 C 0.089 3.911 13 N -0.745 5.745 14 Si 0.915 3.085 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.263 1.263 18 C 0.074 3.926 19 C -0.087 4.087 20 N -0.402 5.402 21 C 0.134 3.866 22 C -0.117 4.117 23 C -0.069 4.069 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.072 4.072 27 C -0.114 4.114 28 C -0.119 4.119 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.143 0.857 33 H 0.102 0.898 34 H 0.365 0.635 35 H 0.272 0.728 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.052 0.948 39 H 0.130 0.870 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.126 0.874 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.821 -6.837 0.116 24.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C -0.189 4.189 4 C -0.131 4.131 5 C -0.141 4.141 6 N -0.019 5.019 7 N -0.342 5.342 8 C 0.370 3.630 9 O -0.439 6.439 10 C -0.575 4.575 11 H 0.087 0.913 12 C -0.135 4.135 13 N -0.373 5.373 14 Si 0.739 3.261 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.187 1.187 18 C -0.041 4.041 19 C -0.145 4.145 20 N -0.077 5.077 21 C 0.044 3.956 22 C -0.136 4.136 23 C -0.070 4.070 24 C -0.172 4.172 25 C -0.137 4.137 26 C -0.073 4.073 27 C -0.170 4.170 28 C -0.138 4.138 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.161 0.839 33 H 0.120 0.880 34 H 0.200 0.800 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.071 0.929 39 H 0.148 0.852 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.144 0.856 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.045 -8.947 0.111 24.722 hybrid contribution 0.473 2.092 -0.032 2.144 sum -22.573 -6.856 0.079 23.591 Atomic orbital electron populations 1.20295 0.88500 1.02791 1.02285 1.20143 0.93061 0.84915 1.12033 1.21623 0.90855 0.97021 1.09447 1.18964 0.90967 0.89969 1.13180 1.23166 0.89662 0.95964 1.05293 1.74960 0.93779 1.25713 1.07489 1.47928 1.02885 1.06362 1.77023 1.16534 0.79586 0.88647 0.78215 1.90724 1.84854 1.14100 1.54178 1.19619 0.90077 0.94336 1.53437 0.91297 1.25744 1.00352 0.94899 0.92468 1.70052 1.25337 1.09739 1.32136 0.86253 0.80409 0.80420 0.79036 1.19489 1.20214 1.18695 1.21213 0.83338 0.94517 1.05014 1.20541 0.94679 0.96035 1.03218 1.40875 1.05489 1.02954 1.58413 1.17643 0.99083 0.83969 0.94883 1.21123 1.00969 0.93761 0.97714 1.19789 0.96925 0.93909 0.96365 1.20818 1.02479 0.98646 0.95265 1.20995 0.99853 0.99687 0.93119 1.19761 0.98201 0.93104 0.96209 1.20798 0.99247 1.01448 0.95542 1.21036 0.99816 0.95721 0.97225 0.91545 0.90367 0.92042 0.83926 0.88036 0.79967 0.91659 0.91121 0.86996 0.92908 0.85246 0.90630 0.91244 0.91291 0.85608 0.90809 0.91284 0.91370 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.03 36.00 0.36 -0.42 16 2 C 0.00 0.06 6.76 -81.63 -0.55 -0.50 16 3 C -0.16 -2.36 10.99 -37.49 -0.41 -2.77 16 4 C -0.12 -2.17 6.34 -102.87 -0.65 -2.82 16 5 C 0.07 1.32 11.05 -14.65 -0.16 1.15 16 6 N -0.21 -4.94 8.64 32.08 0.28 -4.67 16 7 N -0.60 -14.89 6.26 28.80 0.18 -14.71 16 8 C 0.56 16.73 7.63 -15.57 -0.12 16.61 16 9 O -0.56 -18.83 15.18 4.86 0.07 -18.76 16 10 C -0.54 -15.25 9.23 -38.18 -0.35 -15.61 16 11 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 12 C 0.09 2.45 5.49 -17.35 -0.10 2.36 16 13 N -0.75 -22.16 11.69 55.55 0.65 -21.51 16 14 Si 0.91 19.78 29.56 -169.99 -5.02 14.76 16 15 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 16 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 18 C 0.07 1.29 6.88 -80.92 -0.56 0.73 16 19 C -0.09 -1.62 9.49 36.01 0.34 -1.28 16 20 N -0.40 -5.95 2.74 -51.89 -0.14 -6.09 16 21 C 0.13 1.73 4.89 -83.62 -0.41 1.32 16 22 C -0.12 -1.40 8.25 -39.40 -0.33 -1.72 16 23 C -0.07 -0.68 5.88 -104.65 -0.62 -1.30 16 24 C -0.12 -0.87 10.01 36.01 0.36 -0.51 16 25 C -0.12 -1.05 9.35 -39.54 -0.37 -1.42 16 26 C -0.07 -0.67 5.88 -104.65 -0.62 -1.28 16 27 C -0.11 -0.74 10.01 36.01 0.36 -0.38 16 28 C -0.12 -1.32 8.28 -39.39 -0.33 -1.65 16 29 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.56 6.66 -51.93 -0.35 0.21 16 32 H 0.14 1.68 8.06 -52.48 -0.42 1.25 16 33 H 0.10 1.68 8.04 -52.49 -0.42 1.25 16 34 H 0.37 7.80 8.62 -182.60 -1.57 6.23 16 35 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.11 2.47 6.34 -51.93 -0.33 2.14 16 38 H 0.05 0.86 6.65 -51.93 -0.35 0.51 16 39 H 0.13 1.60 8.04 -52.49 -0.42 1.18 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 42 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 43 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 46 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 47 H 0.13 1.35 8.05 -52.48 -0.42 0.93 16 LS Contribution 399.51 15.07 6.02 6.02 Total: -1.00 -36.28 399.51 -10.15 -46.42 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -8.04 Total: 8.00 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -4.14 Total: -9.47 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.96 Total: -46.98 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.07 Total: -18.76 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.28 -10.15 -46.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028216551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.916 kcal (2) G-P(sol) polarization free energy of solvation -36.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds