Wall clock time and date at job start Tue Mar 31 2020 04:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34480 * 125.36403 * 2 1 4 4 C 1.46725 * 106.50955 * 180.02562 * 3 2 1 5 5 C 1.46332 * 127.05256 * 179.97438 * 4 3 2 6 6 N 1.31012 * 119.99505 * 179.97438 * 5 4 3 7 7 N 1.40103 * 119.99822 * 180.02562 * 6 5 4 8 8 C 1.34777 * 120.00175 * 179.97438 * 7 6 5 9 9 O 1.22062 * 119.99946 * 0.02562 * 8 7 6 10 10 C 1.40089 * 120.00089 * 179.97438 * 8 7 6 11 11 H 1.08001 * 119.99512 * 353.69643 * 10 8 7 12 12 C 1.40109 * 120.00083 * 173.69274 * 10 8 7 13 13 N 1.30657 * 120.00043 * 6.30244 * 12 10 8 14 14 Si 1.86807 * 120.00174 * 186.30039 * 12 10 8 15 15 H 1.48491 * 109.46883 * 94.98693 * 14 12 10 16 16 H 1.48499 * 109.47058 * 214.98792 * 14 12 10 17 17 H 1.48496 * 109.46855 * 334.98490 * 14 12 10 18 18 C 1.39192 * 105.88625 * 359.75095 * 4 3 2 19 19 C 1.50702 * 125.99977 * 180.27067 * 18 4 3 20 20 N 1.34828 * 107.99579 * 0.40399 * 18 4 3 21 21 C 1.40066 * 124.83551 * 179.83982 * 20 18 4 22 22 C 1.38871 * 120.07186 * 269.72751 * 21 20 18 23 23 C 1.50705 * 120.03567 * 359.97438 * 22 21 20 24 24 C 1.38104 * 119.93400 * 179.97438 * 22 21 20 25 25 C 1.38296 * 120.06722 * 359.97438 * 24 22 21 26 26 C 1.38289 * 120.13897 * 0.27758 * 25 24 22 27 27 C 1.38113 * 120.06891 * 359.44369 * 26 25 24 28 28 C 1.50699 * 120.03322 * 180.27617 * 27 26 25 29 29 H 1.08998 * 109.47344 * 269.98135 * 1 2 3 30 30 H 1.09008 * 109.46835 * 29.98171 * 1 2 3 31 31 H 1.09001 * 109.47301 * 149.97449 * 1 2 3 32 32 H 1.07998 * 126.74501 * 0.03210 * 3 2 1 33 33 H 1.08001 * 119.99838 * 359.97438 * 5 4 3 34 34 H 0.97000 * 119.99582 * 0.02562 * 7 6 5 35 35 H 0.97003 * 120.00284 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.47301 * 270.15478 * 19 18 4 37 37 H 1.09001 * 109.47529 * 30.15806 * 19 18 4 38 38 H 1.09008 * 109.47000 * 150.16039 * 19 18 4 39 39 H 1.09004 * 109.47105 * 269.98671 * 23 22 21 40 40 H 1.09003 * 109.47043 * 29.97657 * 23 22 21 41 41 H 1.08995 * 109.47441 * 149.98021 * 23 22 21 42 42 H 1.07998 * 119.96911 * 180.02562 * 24 22 21 43 43 H 1.07994 * 119.92937 * 180.02562 * 25 24 22 44 44 H 1.08002 * 119.96921 * 179.72895 * 26 25 24 45 45 H 1.08999 * 109.47464 * 270.27408 * 28 27 26 46 46 H 1.08999 * 109.47234 * 30.28190 * 28 27 26 47 47 H 1.09007 * 109.46817 * 150.28389 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2853 1.0967 0.0000 4 6 3.6738 0.6225 -0.0006 5 6 4.8857 1.4427 -0.0014 6 7 6.0641 0.8702 -0.0014 7 7 7.2244 1.6555 -0.0016 8 6 8.4367 1.0666 -0.0010 9 8 8.5237 -0.1509 -0.0009 10 6 9.5968 1.8518 -0.0018 11 1 9.5229 2.9243 -0.1054 12 6 10.8530 1.2458 0.1321 13 7 10.9530 -0.0569 0.1337 14 14 12.3848 2.3004 0.3081 15 1 12.7065 2.4695 1.7479 16 1 13.5229 1.6388 -0.3791 17 1 12.1426 3.6312 -0.3046 18 6 3.6018 -0.7675 0.0049 19 6 4.7735 -1.7153 0.0122 20 7 2.2996 -1.1172 -0.0005 21 6 1.8250 -2.4350 -0.0007 22 6 1.5893 -3.0895 -1.2026 23 6 1.8433 -2.3826 -2.5090 24 6 1.1218 -4.3891 -1.1994 25 6 0.8890 -5.0387 -0.0009 26 6 1.1177 -4.3879 1.1976 27 6 1.5907 -3.0902 1.2011 28 6 1.8456 -2.3839 2.5077 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3634 -0.8897 -0.5142 32 1 1.9535 2.1244 0.0005 33 1 4.8085 2.5200 -0.0019 34 1 7.1551 2.6230 -0.0013 35 1 11.8226 -0.4765 0.2268 36 1 5.0608 -1.9458 -1.0136 37 1 5.6133 -1.2508 0.5291 38 1 4.4938 -2.6348 0.5265 39 1 0.9375 -1.8645 -2.8239 40 1 2.6491 -1.6598 -2.3803 41 1 2.1272 -3.1119 -3.2676 42 1 0.9387 -4.8988 -2.1337 43 1 0.5238 -6.0550 -0.0010 44 1 0.9308 -4.8963 2.1319 45 1 0.9401 -1.8657 2.8233 46 1 2.1297 -3.1137 3.2658 47 1 2.6515 -1.6613 2.3788 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028216554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:46 Heat of formation + Delta-G solvation = 68.219897 kcal Electronic energy + Delta-G solvation = -28842.211570 eV Core-core repulsion = 24991.402035 eV Total energy + Delta-G solvation = -3850.809535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.62193 -39.10804 -37.40988 -35.09958 -33.85427 -33.28199 -32.65590 -32.27843 -30.73686 -29.42362 -28.85533 -27.19097 -26.88703 -26.42883 -24.19695 -22.92419 -21.52230 -21.07800 -19.86766 -19.79651 -18.50433 -17.10597 -16.77041 -16.44681 -15.67794 -15.45618 -15.42422 -14.45685 -14.37867 -14.17343 -13.98471 -13.52661 -13.42868 -13.24624 -13.14262 -13.05575 -12.93254 -12.80097 -12.68556 -12.56808 -12.07661 -12.05222 -11.89074 -11.86150 -11.77036 -11.50423 -11.37296 -11.35046 -11.15834 -11.09317 -10.74132 -10.53742 -10.30174 -9.14959 -8.98413 -8.98071 -8.86171 -8.53109 -7.84750 -7.63205 -6.78526 -6.32535 -4.85840 0.90779 1.04924 2.09296 2.54417 2.98399 3.08402 3.15230 3.19248 3.34853 3.83135 3.91187 4.23882 4.47951 4.53711 4.54988 4.67015 4.79187 4.99135 5.12735 5.13138 5.30366 5.31327 5.39177 5.41243 5.43045 5.47640 5.51171 5.57775 5.58534 5.74834 5.81701 5.88361 5.89917 5.94168 6.03860 6.13206 6.14480 6.17237 6.20526 6.27284 6.30944 6.59937 6.61128 6.80973 6.97590 7.25091 7.28472 7.46859 7.71709 7.99080 8.11643 8.84404 8.94312 9.47131 10.47023 10.78857 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017379 B = 0.002515 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.740117 B =11131.482242 C =11793.409827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.008 3.992 3 C -0.166 4.166 4 C -0.124 4.124 5 C 0.069 3.931 6 N -0.211 5.211 7 N -0.597 5.597 8 C 0.563 3.437 9 O -0.559 6.559 10 C -0.539 4.539 11 H 0.069 0.931 12 C 0.089 3.911 13 N -0.745 5.745 14 Si 0.914 3.086 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.263 1.263 18 C 0.076 3.924 19 C -0.085 4.085 20 N -0.395 5.395 21 C 0.111 3.889 22 C -0.063 4.063 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.102 4.102 26 C -0.123 4.123 27 C -0.063 4.063 28 C -0.119 4.119 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.141 0.859 33 H 0.101 0.899 34 H 0.365 0.635 35 H 0.272 0.728 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.313 -4.965 0.060 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 C -0.192 4.192 4 C -0.133 4.133 5 C -0.140 4.140 6 N -0.020 5.020 7 N -0.342 5.342 8 C 0.371 3.629 9 O -0.439 6.439 10 C -0.576 4.576 11 H 0.087 0.913 12 C -0.134 4.134 13 N -0.373 5.373 14 Si 0.738 3.262 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.187 1.187 18 C -0.039 4.039 19 C -0.143 4.143 20 N -0.071 5.071 21 C 0.022 3.978 22 C -0.064 4.064 23 C -0.175 4.175 24 C -0.142 4.142 25 C -0.120 4.120 26 C -0.142 4.142 27 C -0.064 4.064 28 C -0.175 4.175 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.159 0.841 33 H 0.118 0.882 34 H 0.200 0.800 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.129 0.871 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.534 -7.084 0.058 23.622 hybrid contribution 0.382 1.908 0.080 1.947 sum -22.152 -5.176 0.138 22.749 Atomic orbital electron populations 1.20237 0.88721 1.02584 1.02068 1.20092 0.92901 0.84913 1.11872 1.21585 0.90858 0.96932 1.09857 1.18935 0.90886 0.89957 1.13499 1.23182 0.89716 0.95946 1.05198 1.74970 0.93759 1.25670 1.07601 1.47926 1.02905 1.06350 1.77052 1.16528 0.79602 0.88625 0.78155 1.90724 1.84893 1.14134 1.54142 1.19619 0.90274 0.94834 1.52869 0.91271 1.25736 1.00220 0.94888 0.92550 1.70056 1.25235 1.09945 1.32018 0.86249 0.80384 0.80528 0.79016 1.19561 1.20207 1.18668 1.21160 0.83373 0.94351 1.05011 1.20490 0.94709 0.96002 1.03069 1.40696 1.05210 1.02737 1.58450 1.17325 1.03169 0.84543 0.92741 1.20092 0.97251 0.94434 0.94626 1.20813 1.02764 1.00653 0.93283 1.20946 1.00871 0.93806 0.98552 1.21224 0.98697 0.99835 0.92255 1.20947 1.00825 0.93854 0.98551 1.20100 0.97216 0.94475 0.94637 1.20815 1.02768 1.00667 0.93288 0.91668 0.90495 0.92327 0.84124 0.88150 0.79987 0.91673 0.91221 0.87116 0.93149 0.90901 0.90665 0.91121 0.85401 0.85552 0.85404 0.90898 0.91117 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.03 36.01 0.36 -0.38 16 2 C 0.01 0.11 6.82 -81.62 -0.56 -0.45 16 3 C -0.17 -2.31 10.99 -37.48 -0.41 -2.72 16 4 C -0.12 -2.13 6.34 -102.86 -0.65 -2.78 16 5 C 0.07 1.30 11.05 -14.65 -0.16 1.14 16 6 N -0.21 -4.90 8.65 32.08 0.28 -4.62 16 7 N -0.60 -14.80 6.26 28.81 0.18 -14.62 16 8 C 0.56 16.69 7.63 -15.56 -0.12 16.57 16 9 O -0.56 -18.80 15.21 4.86 0.07 -18.72 16 10 C -0.54 -15.26 9.22 -38.19 -0.35 -15.61 16 11 H 0.07 1.77 7.86 -52.49 -0.41 1.36 16 12 C 0.09 2.47 5.49 -17.35 -0.10 2.37 16 13 N -0.75 -22.12 11.72 55.55 0.65 -21.47 16 14 Si 0.91 19.76 29.57 -169.99 -5.03 14.73 16 15 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 16 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 18 C 0.08 1.27 5.81 -80.92 -0.47 0.80 16 19 C -0.09 -1.56 9.48 36.01 0.34 -1.22 16 20 N -0.40 -5.50 0.94 -51.89 -0.05 -5.55 16 21 C 0.11 1.40 4.17 -83.62 -0.35 1.05 16 22 C -0.06 -0.71 5.90 -104.43 -0.62 -1.33 16 23 C -0.12 -1.28 9.77 36.01 0.35 -0.93 16 24 C -0.12 -1.15 9.70 -39.61 -0.38 -1.54 16 25 C -0.10 -0.87 10.04 -39.54 -0.40 -1.27 16 26 C -0.12 -1.15 9.70 -39.61 -0.38 -1.54 16 27 C -0.06 -0.72 5.90 -104.43 -0.62 -1.33 16 28 C -0.12 -1.28 9.77 36.01 0.35 -0.93 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.06 0.55 7.75 -51.93 -0.40 0.15 16 32 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 33 H 0.10 1.64 8.04 -52.49 -0.42 1.22 16 34 H 0.37 7.75 8.62 -182.60 -1.57 6.18 16 35 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.11 2.43 6.35 -51.93 -0.33 2.10 16 38 H 0.05 0.84 7.76 -51.92 -0.40 0.43 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.00 7.00 -51.93 -0.36 0.64 16 41 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 42 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 47 H 0.07 1.00 6.97 -51.93 -0.36 0.64 16 LS Contribution 399.20 15.07 6.02 6.02 Total: -1.00 -35.72 399.20 -10.08 -45.80 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -8.05 Total: 8.52 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -4.16 Total: -10.09 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 1.06 Total: -46.27 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.07 Total: -18.72 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.72 -10.08 -45.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028216554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.025 kcal (2) G-P(sol) polarization free energy of solvation -35.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds