Wall clock time and date at job start Tue Mar 31 2020 05:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00085 * 2 1 4 4 H 1.48498 * 109.46751 * 269.99690 * 3 2 1 5 5 H 1.48498 * 109.47429 * 29.99893 * 3 2 1 6 6 H 1.48502 * 109.47087 * 150.00281 * 3 2 1 7 7 C 1.37874 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00515 * 359.97438 * 7 2 1 9 9 C 1.50710 * 120.00026 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.46887 * 180.02562 * 9 7 2 11 11 C 1.35692 * 119.86323 * 90.00106 * 10 9 7 12 12 N 1.30097 * 123.04653 * 179.69006 * 11 10 9 13 13 C 1.34173 * 121.88076 * 0.28377 * 12 11 10 14 14 C 1.40409 * 119.18606 * 359.97438 * 13 12 11 15 15 C 1.40759 * 107.27167 * 180.02562 * 14 13 12 16 16 N 1.30489 * 108.37917 * 359.97438 * 15 14 13 17 17 N 1.36114 * 134.25311 * 180.02562 * 13 12 11 18 18 C 1.40063 * 125.86069 * 359.95054 * 17 13 12 19 19 C 1.38866 * 120.07053 * 324.71485 * 18 17 13 20 20 C 1.38112 * 119.92888 * 179.70478 * 19 18 17 21 21 C 1.38291 * 120.06977 * 0.59680 * 20 19 18 22 22 N 1.48022 * 119.92855 * 179.69773 * 21 20 19 23 23 O 1.21793 * 119.99682 * 179.97438 * 22 21 20 24 24 O 1.21800 * 119.99965 * 359.97438 * 22 21 20 25 25 C 1.38281 * 120.13840 * 359.68324 * 21 20 19 26 26 C 1.38113 * 120.07018 * 0.02562 * 25 21 20 27 27 C 1.35373 * 119.86164 * 270.27076 * 10 9 7 28 28 O 1.21830 * 121.24463 * 359.97438 * 27 10 9 29 29 H 0.97003 * 119.99911 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47150 * 60.00398 * 9 7 2 31 31 H 1.08994 * 109.46700 * 300.00137 * 9 7 2 32 32 H 1.08002 * 118.47932 * 359.97438 * 11 10 9 33 33 H 1.07999 * 125.80867 * 180.02562 * 15 14 13 34 34 H 1.07996 * 120.03381 * 359.97438 * 19 18 17 35 35 H 1.08004 * 119.96754 * 180.29790 * 20 19 18 36 36 H 1.08001 * 119.96439 * 180.02562 * 25 21 20 37 37 H 1.08006 * 120.03644 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0000 10 7 3.9998 -2.5754 0.0001 11 6 4.2245 -3.2127 -1.1766 12 7 4.6629 -4.4354 -1.2488 13 6 4.9211 -5.1616 -0.1505 14 6 4.7135 -4.5879 1.1141 15 6 5.0595 -5.5570 2.0746 16 7 5.4464 -6.6354 1.4500 17 7 5.3745 -6.4265 0.0670 18 6 5.7103 -7.3592 -0.9225 19 6 4.9906 -7.4043 -2.1092 20 6 5.3281 -8.3211 -3.0854 21 6 6.3738 -9.2018 -2.8770 22 7 6.7286 -10.1876 -3.9227 23 8 7.6495 -10.9635 -3.7407 24 8 6.0995 -10.2228 -4.9651 25 6 7.0887 -9.1633 -1.6940 26 6 6.7599 -8.2448 -0.7163 27 6 4.2196 -3.2125 1.1741 28 8 4.0195 -2.6587 2.2407 29 1 -0.4850 0.8401 0.0004 30 1 3.8753 -0.6798 0.8895 31 1 3.8745 -0.6809 -0.8905 32 1 4.0349 -2.6786 -2.0960 33 1 5.0120 -5.4299 3.1460 34 1 4.1705 -6.7203 -2.2704 35 1 4.7718 -8.3535 -4.0106 36 1 7.9051 -9.8521 -1.5344 37 1 7.3190 -8.2149 0.2073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028922562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:57 Heat of formation + Delta-G solvation = 108.998928 kcal Electronic energy + Delta-G solvation = -27811.236823 eV Core-core repulsion = 23559.677589 eV Total energy + Delta-G solvation = -4251.559234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.47696 -42.22466 -40.34151 -39.31047 -37.24188 -36.80609 -34.67451 -34.24270 -32.70208 -31.93880 -30.56541 -29.85383 -28.63590 -26.58019 -24.60986 -24.39806 -23.53539 -23.08751 -21.81092 -21.01667 -19.68409 -19.30390 -18.89658 -17.97015 -17.76834 -17.46328 -17.01597 -16.35597 -16.12026 -15.57474 -15.29616 -14.82434 -14.60651 -14.41369 -14.34306 -14.02587 -13.90963 -13.67425 -13.46293 -12.77361 -12.72447 -12.37995 -12.10043 -11.80979 -11.64221 -11.46706 -11.40711 -11.37700 -10.95406 -10.79618 -10.72441 -10.07221 -10.04034 -9.90210 -9.85068 -9.56400 -8.94001 -8.90871 -8.21148 -6.42582 -4.49085 -0.62914 0.48527 0.54154 1.09506 1.10920 1.62139 1.81179 2.30807 2.81061 2.85032 3.04059 3.13229 3.16672 3.69628 3.75843 3.91468 4.03897 4.08325 4.11637 4.28838 4.47123 4.57725 4.80586 4.84642 4.89993 5.02707 5.09359 5.20499 5.30757 5.34202 5.56090 5.72130 5.95944 6.07987 6.10904 6.26369 6.38694 6.64730 6.90016 7.07382 7.14228 7.38452 7.80539 7.99911 8.15403 8.55705 9.11311 10.69369 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.002496 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.866914 B =11215.036390 C =12195.014673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.083 3.917 3 Si 0.874 3.126 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.194 3.806 10 N -0.510 5.510 11 C 0.445 3.555 12 N -0.567 5.567 13 C 0.356 3.644 14 C -0.342 4.342 15 C 0.151 3.849 16 N -0.281 5.281 17 N -0.333 5.333 18 C 0.225 3.775 19 C -0.115 4.115 20 C -0.030 4.030 21 C -0.058 4.058 22 N 0.032 4.968 23 O -0.164 6.164 24 O -0.160 6.160 25 C -0.036 4.036 26 C -0.117 4.117 27 C 0.571 3.429 28 O -0.502 6.502 29 H 0.271 0.729 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.216 0.784 33 H 0.204 0.796 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.971 -12.629 -4.344 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.122 4.122 3 Si 0.700 3.300 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.589 4.589 8 H 0.098 0.902 9 C 0.074 3.926 10 N -0.225 5.225 11 C 0.157 3.843 12 N -0.297 5.297 13 C 0.122 3.878 14 C -0.358 4.358 15 C -0.040 4.040 16 N -0.097 5.097 17 N -0.112 5.112 18 C 0.131 3.869 19 C -0.137 4.137 20 C -0.050 4.050 21 C -0.142 4.142 22 N 0.551 4.449 23 O -0.379 6.379 24 O -0.376 6.376 25 C -0.055 4.055 26 C -0.137 4.137 27 C 0.364 3.636 28 O -0.374 6.374 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.232 0.768 33 H 0.221 0.779 34 H 0.180 0.820 35 H 0.181 0.819 36 H 0.178 0.822 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 13.093 -13.316 -3.600 19.018 hybrid contribution -0.177 1.781 0.399 1.833 sum 12.916 -11.536 -3.201 17.611 Atomic orbital electron populations 1.69859 1.06271 1.27749 1.47783 1.24794 0.94823 0.99030 0.93576 0.86873 0.80593 0.83538 0.78985 1.19510 1.20408 1.18691 1.21026 0.87531 0.95626 1.54730 0.90236 1.20384 0.97525 0.74662 0.99982 1.47046 1.51718 1.17562 1.06214 1.24876 0.81862 0.86475 0.91094 1.67326 1.27845 1.06455 1.28095 1.19139 0.91834 0.85793 0.91009 1.21194 1.22471 0.98243 0.93869 1.23701 0.91931 0.87800 1.00573 1.77412 1.26602 1.22548 0.83105 1.45409 1.53447 1.07639 1.04688 1.17787 0.93085 0.88926 0.87056 1.21164 1.00902 0.99707 0.91902 1.20875 0.93265 0.90747 1.00064 1.21150 1.03981 0.97677 0.91409 1.43544 0.99396 1.00468 1.01483 1.94537 1.21555 1.36270 1.85503 1.94552 1.51764 1.76434 1.14831 1.20868 0.98054 0.97014 0.89609 1.20988 0.96560 0.95478 1.00712 1.17283 0.77916 0.84618 0.83783 1.90882 1.50732 1.67932 1.27876 0.91874 0.92048 0.93231 0.76797 0.77911 0.82026 0.81934 0.82153 0.82527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.52 13.96 55.43 0.77 -23.74 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 18.57 27.47 -169.99 -4.67 13.90 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.26 -5.34 6.54 56.52 0.37 -4.97 16 7 C -0.55 -13.66 9.94 -34.44 -0.34 -14.01 16 8 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 9 C 0.19 3.86 4.20 -5.19 -0.02 3.84 16 10 N -0.51 -9.00 2.59 -120.38 -0.31 -9.31 16 11 C 0.44 6.09 11.42 -90.11 -1.03 5.06 16 12 N -0.57 -7.83 9.50 -13.39 -0.13 -7.96 16 13 C 0.36 5.32 7.52 -155.74 -1.17 4.15 16 14 C -0.34 -5.59 6.39 -104.90 -0.67 -6.26 16 15 C 0.15 2.08 12.04 -17.17 -0.21 1.87 16 16 N -0.28 -3.81 12.23 30.75 0.38 -3.43 16 17 N -0.33 -4.49 3.75 -9.93 -0.04 -4.53 16 18 C 0.23 2.51 6.40 -83.63 -0.53 1.97 16 19 C -0.12 -1.14 9.38 -39.39 -0.37 -1.51 16 20 C -0.03 -0.26 9.55 -39.61 -0.38 -0.64 16 21 C -0.06 -0.57 6.85 -79.91 -0.55 -1.11 16 22 N 0.03 0.37 4.45 33.98 0.15 0.52 16 23 O -0.16 -1.98 18.44 -29.46 -0.54 -2.53 16 24 O -0.16 -1.97 18.44 -29.46 -0.54 -2.51 16 25 C -0.04 -0.30 9.55 -39.61 -0.38 -0.67 16 26 C -0.12 -1.05 9.76 -39.39 -0.38 -1.44 16 27 C 0.57 10.97 7.66 -12.77 -0.10 10.88 16 28 O -0.50 -11.27 16.86 5.07 0.09 -11.18 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.06 1.32 6.54 -51.93 -0.34 0.98 16 31 H 0.05 0.83 7.43 -51.93 -0.39 0.45 16 32 H 0.22 2.05 8.00 -52.49 -0.42 1.63 16 33 H 0.20 2.18 8.06 -52.49 -0.42 1.76 16 34 H 0.16 1.63 7.21 -52.49 -0.38 1.25 16 35 H 0.16 1.17 7.60 -52.48 -0.40 0.77 16 36 H 0.16 1.02 7.60 -52.49 -0.40 0.62 16 37 H 0.16 1.25 8.06 -52.48 -0.42 0.82 16 LS Contribution 341.43 15.07 5.15 5.15 Total: -1.00 -31.68 341.43 -8.69 -40.37 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -2.76 Total: 1.10 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -6.23 Total: 4.16 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.83 Total: -48.45 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -1.00 Total: -16.22 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -4.67 Total: 13.90 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.68 -8.69 -40.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028922562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.364 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds