Wall clock time and date at job start Tue Mar 31 2020 05:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86794 * 120.00439 * 2 1 4 4 H 1.48504 * 109.47046 * 274.98794 * 3 2 1 5 5 H 1.48497 * 109.46988 * 34.98767 * 3 2 1 6 6 H 1.48494 * 109.47310 * 154.99245 * 3 2 1 7 7 C 1.39908 * 119.99740 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00471 * 147.54497 * 7 2 1 9 9 C 1.41144 * 120.00176 * 327.54294 * 7 2 1 10 10 C 1.40872 * 120.16264 * 157.97378 * 9 7 2 11 11 C 1.36367 * 119.82999 * 180.02562 * 10 9 7 12 12 C 1.39507 * 120.16323 * 0.02562 * 11 10 9 13 13 N 1.39128 * 119.83368 * 179.97438 * 12 11 10 14 14 C 1.34783 * 119.99776 * 322.23268 * 13 12 11 15 15 O 1.21593 * 120.00099 * 3.04273 * 14 13 12 16 16 C 1.47554 * 120.00035 * 183.03840 * 14 13 12 17 17 C 1.39755 * 120.08902 * 359.72776 * 16 14 13 18 18 C 1.37695 * 119.90845 * 179.78828 * 17 16 14 19 19 C 1.39002 * 120.09045 * 0.48748 * 18 17 16 20 20 O 1.35706 * 119.91241 * 179.72362 * 19 18 17 21 21 C 1.42906 * 116.99989 * 0.02562 * 20 19 18 22 22 C 1.50704 * 109.47362 * 180.02562 * 21 20 19 23 23 N 1.34771 * 119.99796 * 180.02562 * 22 21 20 24 24 O 1.21280 * 119.99457 * 0.02562 * 22 21 20 25 25 C 1.39003 * 120.17829 * 359.73815 * 19 18 17 26 26 C 1.37687 * 120.09304 * 0.03003 * 25 19 18 27 27 C 1.39504 * 120.33109 * 0.25101 * 12 11 10 28 28 C 1.36364 * 120.16827 * 359.44140 * 27 12 11 29 29 H 0.97002 * 119.99411 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.08651 * 0.02562 * 10 9 7 31 31 H 1.07997 * 119.91289 * 179.97438 * 11 10 9 32 32 H 0.96991 * 120.00387 * 141.96291 * 13 12 11 33 33 H 1.08002 * 120.04884 * 359.97438 * 17 16 14 34 34 H 1.08003 * 119.95632 * 180.20459 * 18 17 16 35 35 H 1.09003 * 109.47378 * 300.00211 * 21 20 19 36 36 H 1.08994 * 109.46906 * 60.00212 * 21 20 19 37 37 H 0.96996 * 120.00620 * 0.02562 * 23 22 21 38 38 H 0.97000 * 119.99414 * 179.97438 * 23 22 21 39 39 H 1.08004 * 119.95544 * 180.02562 * 25 19 18 40 40 H 1.08005 * 120.05020 * 179.97438 * 26 25 19 41 41 H 1.07999 * 119.91657 * 179.73120 * 27 12 11 42 42 H 1.07999 * 120.09105 * 180.25106 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 2.3850 2.1071 -1.3948 5 1 1.4970 2.6198 0.8028 6 1 3.5891 1.4118 0.5918 7 6 2.0082 -1.2117 -0.0005 8 1 2.9617 -1.2846 -0.5025 9 6 1.4679 -2.3388 0.6549 10 6 1.8860 -3.6350 0.2949 11 6 1.3590 -4.7193 0.9323 12 6 0.4078 -4.5473 1.9382 13 7 -0.1257 -5.6583 2.5836 14 6 -0.3834 -6.7831 1.8870 15 8 -0.0985 -6.8458 0.7066 16 6 -1.0111 -7.9382 2.5569 17 6 -1.3341 -7.8702 3.9149 18 6 -1.9238 -8.9488 4.5353 19 6 -2.1887 -10.1078 3.8151 20 8 -2.7648 -11.1707 4.4315 21 6 -3.0719 -11.0275 5.8198 22 6 -3.7008 -12.2989 6.3290 23 7 -4.0762 -12.3950 7.6198 24 8 -3.8689 -13.2355 5.5771 25 6 -1.8647 -10.1812 2.4654 26 6 -1.2792 -9.1054 1.8364 27 6 -0.0153 -3.2671 2.2962 28 6 0.5072 -2.1730 1.6720 29 1 -0.4849 0.8401 0.0004 30 1 2.6220 -3.7697 -0.4839 31 1 1.6783 -5.7136 0.6571 32 1 -0.3085 -5.6249 3.5356 33 1 -1.1241 -6.9718 4.4764 34 1 -2.1767 -8.8959 5.5840 35 1 -2.1559 -10.8277 6.3758 36 1 -3.7668 -10.1988 5.9546 37 1 -3.9420 -11.6457 8.2210 38 1 -4.4813 -13.2132 7.9474 39 1 -2.0725 -11.0834 1.9092 40 1 -1.0274 -9.1634 0.7877 41 1 -0.7553 -3.1419 3.0728 42 1 0.1817 -1.1823 1.9530 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032778008.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:04 Heat of formation + Delta-G solvation = -58.770476 kcal Electronic energy + Delta-G solvation = -26854.089966 eV Core-core repulsion = 22764.221959 eV Total energy + Delta-G solvation = -4089.868007 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.86414 -39.96741 -39.21610 -37.61110 -36.75994 -34.51113 -34.32562 -33.13448 -31.44530 -30.68914 -29.57797 -29.17334 -28.42433 -25.17586 -23.46536 -23.12672 -21.66309 -21.20275 -20.68725 -19.75980 -18.88312 -18.22341 -17.64703 -17.30695 -16.86746 -16.85088 -16.40175 -15.66589 -15.21584 -15.10188 -14.82081 -14.50997 -14.40300 -14.04990 -13.96559 -13.67101 -13.24631 -13.15482 -12.75973 -12.67861 -12.44423 -12.08154 -12.00121 -11.48968 -11.29662 -11.17918 -11.14308 -11.04273 -10.72546 -10.51603 -10.33812 -10.11999 -9.65787 -9.37325 -9.30086 -9.06443 -8.85771 -8.49323 -7.55574 -7.15848 -6.86906 -4.28601 0.80244 1.11243 1.98033 2.16864 2.62091 2.96094 3.03944 3.08865 3.10374 3.25974 3.29844 3.72492 3.87820 3.93133 4.12343 4.34999 4.44233 4.48510 4.52586 4.56559 4.95332 5.02856 5.22134 5.39372 5.65207 5.72548 5.87711 6.00016 6.12457 6.17138 6.26467 6.40327 6.43866 6.62221 6.76629 6.95238 6.97971 6.99179 7.13730 7.28134 7.55602 7.61593 7.69258 7.88838 8.00959 8.24489 8.28080 8.53877 8.76603 8.82662 8.99323 10.00982 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.033755 B = 0.001703 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.301823 B =16441.178355 C =16983.927828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.897 3.103 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.464 4.464 8 H 0.082 0.918 9 C 0.112 3.888 10 C -0.223 4.223 11 C -0.064 4.064 12 C -0.024 4.024 13 N -0.643 5.643 14 C 0.541 3.459 15 O -0.530 6.530 16 C -0.157 4.157 17 C -0.048 4.048 18 C -0.218 4.218 19 C 0.143 3.857 20 O -0.288 6.288 21 C 0.037 3.963 22 C 0.520 3.480 23 N -0.851 5.851 24 O -0.517 6.517 25 C -0.153 4.153 26 C -0.021 4.021 27 C -0.101 4.101 28 C -0.172 4.172 29 H 0.284 0.716 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.392 0.608 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.404 0.596 38 H 0.409 0.591 39 H 0.139 0.861 40 H 0.146 0.854 41 H 0.089 0.911 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.398 -15.940 17.357 24.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.492 4.492 8 H 0.100 0.900 9 C 0.109 3.891 10 C -0.243 4.243 11 C -0.084 4.084 12 C -0.116 4.116 13 N -0.285 5.285 14 C 0.329 3.671 15 O -0.408 6.408 16 C -0.160 4.160 17 C -0.067 4.067 18 C -0.237 4.237 19 C 0.097 3.903 20 O -0.200 6.200 21 C -0.042 4.042 22 C 0.303 3.697 23 N -0.418 5.418 24 O -0.391 6.391 25 C -0.172 4.172 26 C -0.040 4.040 27 C -0.121 4.121 28 C -0.191 4.191 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.226 0.774 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.232 0.768 38 H 0.241 0.759 39 H 0.157 0.843 40 H 0.164 0.836 41 H 0.107 0.893 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.513 -16.536 15.756 24.045 hybrid contribution -0.045 1.111 1.232 1.660 sum -7.558 -15.425 16.988 24.159 Atomic orbital electron populations 1.69965 1.08114 1.29901 1.30962 1.25958 0.94351 1.01560 0.91604 0.86496 0.81466 0.80794 0.79247 1.19439 1.19899 1.18084 1.19522 1.05435 0.93775 1.30448 0.89960 1.17606 0.89843 0.91857 0.89759 1.20583 1.07192 0.92258 1.04311 1.20311 0.94577 0.97934 0.95554 1.17033 1.04424 0.84756 1.05412 1.42813 1.62387 1.12349 1.10989 1.18128 0.79486 0.82875 0.86607 1.90773 1.52586 1.82022 1.15458 1.20072 1.05645 0.96002 0.94310 1.21119 0.94371 0.97738 0.93477 1.21096 1.07851 0.94119 1.00607 1.19235 0.92641 0.85923 0.92482 1.86115 1.75239 1.36537 1.22128 1.22477 1.01746 0.97060 0.82876 1.20065 0.78282 0.88857 0.82511 1.43652 1.66248 1.21174 1.10688 1.90828 1.53178 1.39390 1.55709 1.20410 1.04307 1.00698 0.91758 1.21145 0.92295 0.90048 1.00535 1.20164 0.99454 0.91766 1.00707 1.20605 1.02832 0.96622 0.99090 0.90561 0.88699 0.87920 0.77400 0.85143 0.85046 0.88526 0.88513 0.76774 0.75901 0.84345 0.83648 0.89295 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.45 11.78 55.55 0.65 -18.80 16 2 C 0.09 2.15 4.77 -17.33 -0.08 2.06 16 3 Si 0.90 18.01 29.66 -169.99 -5.04 12.97 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.46 -12.21 8.94 -37.85 -0.34 -12.55 16 8 H 0.08 2.09 8.02 -52.49 -0.42 1.67 16 9 C 0.11 2.99 5.57 -106.80 -0.60 2.40 16 10 C -0.22 -5.71 9.74 -39.26 -0.38 -6.09 16 11 C -0.06 -1.55 8.59 -39.78 -0.34 -1.89 16 12 C -0.02 -0.54 6.25 -83.60 -0.52 -1.07 16 13 N -0.64 -11.47 5.24 -10.68 -0.06 -11.53 16 14 C 0.54 9.87 7.57 -12.46 -0.09 9.77 16 15 O -0.53 -11.81 13.96 5.28 0.07 -11.73 16 16 C -0.16 -2.19 5.87 -104.96 -0.62 -2.80 16 17 C -0.05 -0.51 9.53 -39.21 -0.37 -0.88 16 18 C -0.22 -1.92 9.01 -39.50 -0.36 -2.28 16 19 C 0.14 1.49 6.70 -39.01 -0.26 1.23 16 20 O -0.29 -2.98 9.66 -38.73 -0.37 -3.35 16 21 C 0.04 0.22 5.21 36.01 0.19 0.40 16 22 C 0.52 3.76 8.18 -10.99 -0.09 3.68 16 23 N -0.85 -2.16 8.87 31.22 0.28 -1.89 16 24 O -0.52 -6.61 17.34 -14.35 -0.25 -6.86 16 25 C -0.15 -1.73 9.97 -39.50 -0.39 -2.13 16 26 C -0.02 -0.28 9.58 -39.21 -0.38 -0.65 16 27 C -0.10 -2.29 9.90 -39.79 -0.39 -2.68 16 28 C -0.17 -4.36 8.74 -39.26 -0.34 -4.70 16 29 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 30 H 0.09 2.31 8.06 -52.49 -0.42 1.88 16 31 H 0.10 2.46 6.45 -52.49 -0.34 2.12 16 32 H 0.39 5.38 6.85 -40.82 -0.28 5.10 16 33 H 0.13 1.08 6.40 -52.49 -0.34 0.75 16 34 H 0.13 0.68 6.28 -52.48 -0.33 0.35 16 35 H 0.10 0.31 7.65 -51.93 -0.40 -0.09 16 36 H 0.10 0.32 7.65 -51.93 -0.40 -0.08 16 37 H 0.40 -0.36 8.83 -40.82 -0.36 -0.72 16 38 H 0.41 0.80 8.93 -40.82 -0.36 0.43 16 39 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 40 H 0.15 1.91 7.64 -52.48 -0.40 1.51 16 41 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.11 2.74 6.52 -52.49 -0.34 2.40 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -35.82 365.64 -8.95 -44.77 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -4.37 Total: 9.09 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -5.37 Total: -18.18 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.88 Total: -32.21 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.55 Total: -21.94 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.04 Total: 12.97 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.82 -8.95 -44.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032778008.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.003 kcal (2) G-P(sol) polarization free energy of solvation -35.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds