Wall clock time and date at job start Tue Mar 31 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00133 * 2 1 4 4 H 1.48497 * 109.47096 * 270.00298 * 3 2 1 5 5 H 1.48497 * 109.46969 * 30.00652 * 3 2 1 6 6 H 1.48504 * 109.46936 * 150.00726 * 3 2 1 7 7 C 1.37877 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99876 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99995 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47098 * 180.02562 * 9 7 2 11 11 C 1.35697 * 119.86149 * 270.02390 * 10 9 7 12 12 N 1.30101 * 123.04924 * 179.97438 * 11 10 9 13 13 C 1.34176 * 121.87298 * 0.04792 * 12 11 10 14 14 C 1.40396 * 119.19194 * 359.93067 * 13 12 11 15 15 C 1.40758 * 107.27683 * 180.02562 * 14 13 12 16 16 N 1.30493 * 108.37301 * 0.22932 * 15 14 13 17 17 N 1.36108 * 134.24334 * 180.02562 * 13 12 11 18 18 C 1.40060 * 125.87129 * 359.92822 * 17 13 12 19 19 C 1.38886 * 120.07245 * 58.05017 * 18 17 13 20 20 C 1.38088 * 119.93099 * 179.75039 * 19 18 17 21 21 C 1.38309 * 120.06794 * 0.50511 * 20 19 18 22 22 C 1.38257 * 120.14173 * 359.76458 * 21 20 19 23 23 C 1.38134 * 120.06783 * 359.97438 * 22 21 20 24 24 N 1.48028 * 120.03235 * 179.97438 * 23 22 21 25 25 O 1.21793 * 120.00056 * 6.19003 * 24 23 22 26 26 O 1.21802 * 119.99767 * 186.18704 * 24 23 22 27 27 C 1.35360 * 119.86448 * 89.99463 * 10 9 7 28 28 O 1.21834 * 121.24734 * 0.03032 * 27 10 9 29 29 H 0.97002 * 119.99477 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47336 * 60.00447 * 9 7 2 31 31 H 1.08991 * 109.47186 * 299.99618 * 9 7 2 32 32 H 1.08007 * 118.47678 * 359.97438 * 11 10 9 33 33 H 1.08006 * 125.81160 * 179.97438 * 15 14 13 34 34 H 1.07997 * 120.03294 * 359.97438 * 19 18 17 35 35 H 1.07999 * 119.96740 * 180.22800 * 20 19 18 36 36 H 1.08004 * 119.92757 * 179.75327 * 21 20 19 37 37 H 1.08003 * 119.96839 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 2.6422 -4.1260 -1.1773 12 7 3.4867 -5.1131 -1.2497 13 6 3.9869 -5.6995 -0.1514 14 6 3.5906 -5.2360 1.1132 15 6 4.2589 -6.0184 2.0736 16 7 5.0070 -6.8861 1.4489 17 7 4.8605 -6.7204 0.0658 18 6 5.5050 -7.4735 -0.9236 19 6 6.3080 -6.8433 -1.8654 20 6 6.9463 -7.5893 -2.8365 21 6 6.7782 -8.9615 -2.8783 22 6 5.9750 -9.5912 -1.9456 23 6 5.3381 -8.8513 -0.9684 24 7 4.4779 -9.5263 0.0294 25 8 4.4200 -10.7424 0.0601 26 8 3.8281 -8.8654 0.8196 27 6 2.6409 -4.1250 1.1733 28 8 2.2581 -3.6780 2.2401 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5568 -0.8903 31 1 0.6246 -2.5571 0.8896 32 1 2.2738 -3.6951 -2.0967 33 1 4.1710 -5.9151 3.1451 34 1 6.4360 -5.7714 -1.8360 35 1 7.5738 -7.1002 -3.5668 36 1 7.2753 -9.5423 -3.6412 37 1 5.8460 -10.6630 -1.9806 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032783014.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:00 Heat of formation + Delta-G solvation = 119.818939 kcal Electronic energy + Delta-G solvation = -28881.094650 eV Core-core repulsion = 24630.004607 eV Total energy + Delta-G solvation = -4251.090043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.39782 -41.75450 -40.07021 -39.18010 -36.94336 -36.54605 -34.40183 -33.91814 -32.61711 -32.33723 -29.87456 -29.53254 -27.80799 -26.63694 -24.54551 -24.17689 -23.49515 -22.89246 -21.87515 -20.94416 -19.48955 -18.85648 -18.56020 -17.77170 -17.46570 -17.00661 -16.76711 -16.31698 -16.13586 -15.45806 -15.25266 -14.80477 -14.50516 -14.37018 -14.07204 -13.88373 -13.52168 -13.38937 -12.96827 -12.61002 -12.37403 -12.23173 -11.82266 -11.57428 -11.32570 -11.19223 -11.13721 -11.04290 -10.92564 -10.48441 -10.30935 -10.18252 -10.02926 -9.79447 -9.54337 -9.36580 -8.80093 -8.71828 -7.91118 -6.34836 -4.43093 -0.45782 0.32722 1.00989 1.15508 1.23200 1.87074 2.14507 2.61408 2.82252 3.15060 3.16408 3.24016 3.29984 3.85195 3.96272 4.02391 4.14282 4.23652 4.38165 4.44711 4.52569 4.62856 4.89586 5.01727 5.06641 5.09795 5.27671 5.37486 5.46695 5.55676 5.63231 5.82186 6.24969 6.36263 6.48025 6.58996 6.91536 7.00472 7.27928 7.47751 7.58280 7.60837 7.76254 8.10279 8.40242 8.60043 9.24339 10.73736 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.003077 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.110296 B = 9096.668123 C = 9865.515278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.070 3.930 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.223 3.777 10 N -0.515 5.515 11 C 0.438 3.562 12 N -0.572 5.572 13 C 0.358 3.642 14 C -0.337 4.337 15 C 0.147 3.853 16 N -0.258 5.258 17 N -0.341 5.341 18 C 0.235 3.765 19 C -0.106 4.106 20 C -0.053 4.053 21 C -0.118 4.118 22 C -0.048 4.048 23 C -0.041 4.041 24 N 0.028 4.972 25 O -0.176 6.176 26 O -0.121 6.121 27 C 0.569 3.431 28 O -0.506 6.506 29 H 0.269 0.731 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.211 0.789 33 H 0.201 0.799 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.941 -15.262 -9.400 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.105 3.895 10 N -0.231 5.231 11 C 0.150 3.850 12 N -0.302 5.302 13 C 0.125 3.875 14 C -0.353 4.353 15 C -0.045 4.045 16 N -0.073 5.073 17 N -0.122 5.122 18 C 0.142 3.858 19 C -0.126 4.126 20 C -0.072 4.072 21 C -0.137 4.137 22 C -0.067 4.067 23 C -0.127 4.127 24 N 0.549 4.451 25 O -0.385 6.385 26 O -0.345 6.345 27 C 0.362 3.638 28 O -0.379 6.379 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.228 0.772 33 H 0.217 0.783 34 H 0.171 0.829 35 H 0.170 0.830 36 H 0.170 0.830 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 14.095 -15.939 -9.677 23.374 hybrid contribution -0.614 1.645 0.848 1.950 sum 13.481 -14.293 -8.829 21.541 Atomic orbital electron populations 1.69909 1.06063 1.27845 1.48463 1.24902 0.94956 0.99497 0.94112 0.86361 0.79838 0.82244 0.78291 1.20274 1.20779 1.19690 1.21203 0.93456 0.89693 1.53874 0.91888 1.20012 0.87253 0.81361 1.00913 1.47328 1.38726 1.31061 1.05935 1.24763 0.84381 0.84702 0.91191 1.67257 1.19346 1.15198 1.28426 1.19019 0.89710 0.87866 0.90950 1.21148 1.12808 1.07550 0.93801 1.23542 0.90953 0.89697 1.00275 1.77390 1.24448 1.22790 0.82678 1.45106 1.36096 1.26586 1.04420 1.16980 0.92989 0.86949 0.88913 1.21358 0.94794 1.02100 0.94380 1.21506 0.95853 0.93808 0.96020 1.21303 0.98586 0.94884 0.98893 1.21026 0.92970 1.01760 0.90985 1.21259 1.03061 0.91951 0.96415 1.43343 1.00162 1.00931 1.00658 1.94500 1.70869 0.95803 1.77366 1.94665 1.40499 1.65395 1.33936 1.17322 0.80818 0.81761 0.83872 1.90868 1.57741 1.61375 1.27928 0.92114 0.92688 0.91833 0.77231 0.78281 0.82915 0.83023 0.83005 0.82332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.87 13.29 55.43 0.74 -23.13 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.91 20.15 29.54 -169.99 -5.02 15.13 16 4 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -13.81 9.39 -34.44 -0.32 -14.14 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.22 5.09 5.13 -5.19 -0.03 5.06 16 10 N -0.51 -10.25 2.59 -120.38 -0.31 -10.57 16 11 C 0.44 6.97 11.42 -90.11 -1.03 5.95 16 12 N -0.57 -9.25 10.37 -13.39 -0.14 -9.39 16 13 C 0.36 6.28 7.83 -155.74 -1.22 5.06 16 14 C -0.34 -6.41 6.39 -104.90 -0.67 -7.08 16 15 C 0.15 2.49 12.04 -17.17 -0.21 2.28 16 16 N -0.26 -4.41 9.95 30.76 0.31 -4.11 16 17 N -0.34 -5.59 2.55 -9.94 -0.03 -5.62 16 18 C 0.24 3.16 6.11 -83.63 -0.51 2.65 16 19 C -0.11 -1.03 9.80 -39.40 -0.39 -1.42 16 20 C -0.05 -0.32 10.04 -39.61 -0.40 -0.71 16 21 C -0.12 -0.65 10.04 -39.55 -0.40 -1.04 16 22 C -0.05 -0.41 9.55 -39.61 -0.38 -0.79 16 23 C -0.04 -0.53 6.86 -79.75 -0.55 -1.08 16 24 N 0.03 0.44 4.45 34.06 0.15 0.59 16 25 O -0.18 -2.70 18.46 -29.46 -0.54 -3.25 16 26 O -0.12 -2.21 15.25 -29.46 -0.45 -2.66 16 27 C 0.57 12.28 7.66 -12.77 -0.10 12.18 16 28 O -0.51 -12.54 16.86 5.07 0.09 -12.45 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.06 1.18 8.00 -51.93 -0.42 0.77 16 31 H 0.06 1.65 7.47 -51.93 -0.39 1.26 16 32 H 0.21 2.49 8.00 -52.48 -0.42 2.07 16 33 H 0.20 2.77 8.06 -52.48 -0.42 2.35 16 34 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.15 0.40 8.06 -52.49 -0.42 -0.03 16 36 H 0.15 0.30 8.06 -52.48 -0.42 -0.13 16 37 H 0.16 1.06 7.62 -52.48 -0.40 0.66 16 LS Contribution 341.80 15.07 5.15 5.15 Total: -1.00 -33.88 341.80 -9.21 -43.08 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -2.86 Total: -1.42 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: -6.29 Total: 8.64 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.72 Total: -52.22 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.91 Total: -18.36 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.88 -9.21 -43.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032783014.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.901 kcal (2) G-P(sol) polarization free energy of solvation -33.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds