Wall clock time and date at job start Tue Mar 31 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00133 * 2 1 4 4 H 1.48497 * 109.47096 * 270.00298 * 3 2 1 5 5 H 1.48497 * 109.46969 * 30.00652 * 3 2 1 6 6 H 1.48504 * 109.46936 * 150.00726 * 3 2 1 7 7 C 1.37877 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99876 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99995 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47098 * 180.02562 * 9 7 2 11 11 C 1.35697 * 119.86149 * 270.02390 * 10 9 7 12 12 N 1.30101 * 123.04924 * 179.97438 * 11 10 9 13 13 C 1.34176 * 121.87298 * 0.04792 * 12 11 10 14 14 C 1.40396 * 119.19194 * 359.93067 * 13 12 11 15 15 C 1.40758 * 107.27683 * 180.02562 * 14 13 12 16 16 N 1.30493 * 108.37301 * 0.22932 * 15 14 13 17 17 N 1.36108 * 134.24334 * 180.02562 * 13 12 11 18 18 C 1.40060 * 125.87129 * 359.92822 * 17 13 12 19 19 C 1.38886 * 120.07245 * 58.05017 * 18 17 13 20 20 C 1.38088 * 119.93099 * 179.75039 * 19 18 17 21 21 C 1.38309 * 120.06794 * 0.50511 * 20 19 18 22 22 C 1.38257 * 120.14173 * 359.76458 * 21 20 19 23 23 C 1.38134 * 120.06783 * 359.97438 * 22 21 20 24 24 N 1.48028 * 120.03235 * 179.97438 * 23 22 21 25 25 O 1.21793 * 120.00056 * 6.19003 * 24 23 22 26 26 O 1.21802 * 119.99767 * 186.18704 * 24 23 22 27 27 C 1.35360 * 119.86448 * 89.99463 * 10 9 7 28 28 O 1.21834 * 121.24734 * 0.03032 * 27 10 9 29 29 H 0.97002 * 119.99477 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47336 * 60.00447 * 9 7 2 31 31 H 1.08991 * 109.47186 * 299.99618 * 9 7 2 32 32 H 1.08007 * 118.47678 * 359.97438 * 11 10 9 33 33 H 1.08006 * 125.81160 * 179.97438 * 15 14 13 34 34 H 1.07997 * 120.03294 * 359.97438 * 19 18 17 35 35 H 1.07999 * 119.96740 * 180.22800 * 20 19 18 36 36 H 1.08004 * 119.92757 * 179.75327 * 21 20 19 37 37 H 1.08003 * 119.96839 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 2.6422 -4.1260 -1.1773 12 7 3.4867 -5.1131 -1.2497 13 6 3.9869 -5.6995 -0.1514 14 6 3.5906 -5.2360 1.1132 15 6 4.2589 -6.0184 2.0736 16 7 5.0070 -6.8861 1.4489 17 7 4.8605 -6.7204 0.0658 18 6 5.5050 -7.4735 -0.9236 19 6 6.3080 -6.8433 -1.8654 20 6 6.9463 -7.5893 -2.8365 21 6 6.7782 -8.9615 -2.8783 22 6 5.9750 -9.5912 -1.9456 23 6 5.3381 -8.8513 -0.9684 24 7 4.4779 -9.5263 0.0294 25 8 4.4200 -10.7424 0.0601 26 8 3.8281 -8.8654 0.8196 27 6 2.6409 -4.1250 1.1733 28 8 2.2581 -3.6780 2.2401 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5568 -0.8903 31 1 0.6246 -2.5571 0.8896 32 1 2.2738 -3.6951 -2.0967 33 1 4.1710 -5.9151 3.1451 34 1 6.4360 -5.7714 -1.8360 35 1 7.5738 -7.1002 -3.5668 36 1 7.2753 -9.5423 -3.6412 37 1 5.8460 -10.6630 -1.9806 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032783014.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:00 Heat of formation + Delta-G solvation = 100.761737 kcal Electronic energy + Delta-G solvation = -28881.921033 eV Core-core repulsion = 24630.004607 eV Total energy + Delta-G solvation = -4251.916426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.55027 -43.06940 -41.32261 -40.18810 -38.54190 -37.71761 -36.06523 -34.95013 -34.41440 -33.13757 -30.97666 -30.87553 -29.57380 -27.65048 -25.97942 -25.66806 -24.67551 -23.85941 -23.36038 -22.08282 -20.65328 -20.00426 -19.59940 -19.18843 -18.88564 -18.62873 -18.15433 -17.44950 -17.31989 -16.66025 -16.40105 -16.11708 -15.80016 -15.65592 -15.35293 -15.20985 -14.91030 -14.44273 -14.26455 -13.86148 -13.68728 -13.55871 -13.12353 -12.87072 -12.77748 -12.67451 -12.51826 -12.36065 -12.34115 -12.28728 -12.00542 -11.34892 -11.29495 -11.15125 -10.81208 -10.73908 -10.67929 -9.95833 -9.42750 -8.31738 -6.46344 -1.43352 -0.53543 -0.15180 0.18674 0.23559 0.61616 0.74344 1.30880 1.40228 1.43415 1.51640 1.63848 2.12643 2.35198 2.52533 2.78646 3.02329 3.03784 3.21711 3.44182 3.59379 3.75475 3.81510 3.86589 3.95841 4.04963 4.24425 4.41249 4.63188 4.73493 4.87902 4.96449 4.99404 5.04751 5.09054 5.21288 5.37028 5.51576 5.64036 5.75915 5.83557 6.13867 6.39047 6.57414 6.68593 6.80154 7.24715 8.76842 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.003077 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.110296 B = 9096.668123 C = 9865.515278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.967 3.033 4 H -0.258 1.258 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.555 4.555 8 H 0.056 0.944 9 C 0.239 3.761 10 N -0.522 5.522 11 C 0.440 3.560 12 N -0.554 5.554 13 C 0.354 3.646 14 C -0.362 4.362 15 C 0.138 3.862 16 N -0.262 5.262 17 N -0.332 5.332 18 C 0.186 3.814 19 C -0.110 4.110 20 C -0.027 4.027 21 C -0.088 4.088 22 C -0.044 4.044 23 C -0.066 4.066 24 N 0.029 4.971 25 O -0.154 6.154 26 O -0.202 6.202 27 C 0.560 3.440 28 O -0.556 6.556 29 H 0.272 0.728 30 H 0.072 0.928 31 H 0.022 0.978 32 H 0.255 0.745 33 H 0.218 0.782 34 H 0.152 0.848 35 H 0.200 0.800 36 H 0.205 0.795 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.106 -16.426 -13.605 26.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.791 3.209 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.593 4.593 8 H 0.074 0.926 9 C 0.119 3.881 10 N -0.238 5.238 11 C 0.154 3.846 12 N -0.283 5.283 13 C 0.119 3.881 14 C -0.377 4.377 15 C -0.054 4.054 16 N -0.077 5.077 17 N -0.112 5.112 18 C 0.094 3.906 19 C -0.130 4.130 20 C -0.045 4.045 21 C -0.107 4.107 22 C -0.063 4.063 23 C -0.152 4.152 24 N 0.544 4.456 25 O -0.374 6.374 26 O -0.408 6.408 27 C 0.355 3.645 28 O -0.434 6.434 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.271 0.729 33 H 0.234 0.766 34 H 0.169 0.831 35 H 0.217 0.783 36 H 0.222 0.778 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 17.252 -17.057 -13.869 27.945 hybrid contribution -1.363 1.706 1.905 2.898 sum 15.889 -15.351 -11.964 25.125 Atomic orbital electron populations 1.70000 1.07310 1.28730 1.49373 1.25679 0.95707 1.02630 0.93740 0.85422 0.78073 0.78355 0.79039 1.18287 1.20779 1.20327 1.21430 0.93273 0.90969 1.53597 0.92596 1.19601 0.87270 0.81623 0.99596 1.47157 1.38958 1.30902 1.06806 1.25664 0.83714 0.84184 0.91077 1.67386 1.18812 1.14705 1.27393 1.19180 0.89864 0.88350 0.90708 1.21161 1.13371 1.07750 0.95466 1.23844 0.90951 0.89426 1.01145 1.77308 1.24315 1.22306 0.83811 1.45230 1.35396 1.25990 1.04572 1.17551 0.95705 0.87348 0.90000 1.21596 0.94568 1.02491 0.94396 1.22114 0.93832 0.93993 0.94554 1.21968 0.95916 0.94913 0.97864 1.21537 0.92150 1.02691 0.89904 1.21559 1.04405 0.92022 0.97165 1.43829 1.00053 1.00875 1.00875 1.94432 1.69869 0.96386 1.76730 1.94678 1.43763 1.65497 1.36828 1.17748 0.80859 0.82100 0.83751 1.90814 1.59739 1.63158 1.29658 0.91900 0.90994 0.95935 0.72915 0.76570 0.83050 0.78296 0.77762 0.80388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.11 13.29 21.45 0.28 -49.83 16 2 C 0.02 1.25 5.46 84.65 0.46 1.71 16 3 Si 0.97 41.35 29.54 68.60 2.03 43.38 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.55 -28.71 9.39 25.60 0.24 -28.47 16 8 H 0.06 2.91 7.81 -2.91 -0.02 2.89 16 9 C 0.24 11.31 5.13 85.63 0.44 11.75 16 10 N -0.52 -21.55 2.59 -652.59 -1.69 -23.24 16 11 C 0.44 13.84 11.42 180.17 2.06 15.89 16 12 N -0.55 -17.67 10.37 -196.29 -2.04 -19.70 16 13 C 0.35 12.74 7.83 133.79 1.05 13.78 16 14 C -0.36 -14.59 6.39 -20.05 -0.13 -14.72 16 15 C 0.14 5.03 12.04 85.51 1.03 6.06 16 16 N -0.26 -9.46 9.95 -56.61 -0.56 -10.02 16 17 N -0.33 -11.13 2.55 -185.35 -0.47 -11.60 16 18 C 0.19 4.81 6.11 38.13 0.23 5.05 16 19 C -0.11 -1.81 9.80 22.39 0.22 -1.59 16 20 C -0.03 -0.16 10.04 22.25 0.22 0.07 16 21 C -0.09 -0.38 10.04 22.29 0.22 -0.15 16 22 C -0.04 -0.56 9.55 22.25 0.21 -0.34 16 23 C -0.07 -1.61 6.86 36.50 0.25 -1.35 16 24 N 0.03 0.94 4.45 -46.16 -0.21 0.74 16 25 O -0.15 -4.67 18.46 18.90 0.35 -4.32 16 26 O -0.20 -7.85 15.25 18.88 0.29 -7.56 16 27 C 0.56 25.74 7.66 86.24 0.66 26.40 16 28 O -0.56 -29.78 16.86 -4.78 -0.08 -29.86 16 29 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 30 H 0.07 3.13 8.00 -2.39 -0.02 3.11 16 31 H 0.02 1.25 7.47 -2.39 -0.02 1.23 16 32 H 0.26 5.45 8.00 -2.91 -0.02 5.43 16 33 H 0.22 6.63 8.06 -2.91 -0.02 6.61 16 34 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 35 H 0.20 -0.59 8.06 -2.91 -0.02 -0.61 16 36 H 0.21 -1.07 8.06 -2.91 -0.02 -1.10 16 37 H 0.18 1.57 7.62 -2.91 -0.02 1.55 16 Total: -1.00 -81.48 341.80 6.23 -75.25 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: 1.15 Total: 2.69 kcal Atomic # 6 Polarization: 26.90 SS G_CDS: 7.17 Total: 34.07 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -4.68 Total: -113.66 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: 0.56 Total: -41.74 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -81.48 6.23 -75.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032783014.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.016 kcal (2) G-P(sol) polarization free energy of solvation -81.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds