Wall clock time and date at job start Tue Mar 31 2020 05:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29409 * 1 3 3 Si 1.86804 * 119.99856 * 2 1 4 4 H 1.48503 * 109.46814 * 239.99975 * 3 2 1 5 5 H 1.48501 * 109.47294 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46645 * 120.00194 * 3 2 1 7 7 C 1.46564 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99822 * 179.97438 * 7 2 1 9 9 O 1.22293 * 120.00100 * 359.97438 * 7 2 1 10 10 C 1.35678 * 117.00247 * 185.12983 * 9 7 2 11 11 C 1.39029 * 119.98776 * 354.02243 * 10 9 7 12 12 C 1.37896 * 120.00957 * 180.25478 * 11 10 9 13 13 C 1.39114 * 119.98458 * 359.49672 * 12 11 10 14 14 N 1.39468 * 120.00453 * 180.27442 * 13 12 11 15 15 C 1.39709 * 120.00215 * 34.10188 * 14 13 12 16 16 N 1.33481 * 125.79619 * 355.13470 * 15 14 13 17 17 C 1.32933 * 109.25303 * 179.88723 * 16 15 14 18 18 C 1.40598 * 132.11549 * 180.13014 * 17 16 15 19 19 C 1.36445 * 119.37932 * 180.26453 * 18 17 16 20 20 C 1.40217 * 119.66691 * 0.02562 * 19 18 17 21 21 C 1.35228 * 120.23129 * 0.02562 * 20 19 18 22 22 N 1.36452 * 120.60293 * 359.96606 * 21 20 19 23 23 C 1.36497 * 125.79618 * 175.44069 * 15 14 13 24 24 N 1.53113 * 126.49563 * 359.92978 * 23 15 14 25 25 O 1.31700 * 120.00093 * 270.02075 * 24 23 15 26 26 O 1.31699 * 120.00106 * 90.02364 * 24 23 15 27 27 C 1.39105 * 119.98257 * 0.52492 * 13 12 11 28 28 C 1.37890 * 119.99288 * 359.72981 * 27 13 12 29 29 H 0.97004 * 119.99781 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00041 * 359.97438 * 11 10 9 31 31 H 1.07996 * 120.01020 * 179.74610 * 12 11 10 32 32 H 0.97004 * 120.00421 * 214.09940 * 14 13 12 33 33 H 1.08004 * 120.31601 * 0.24687 * 18 17 16 34 34 H 1.07994 * 120.16529 * 179.97438 * 19 18 17 35 35 H 1.07994 * 119.88561 * 180.02562 * 20 19 18 36 36 H 1.08003 * 119.70040 * 180.02562 * 21 20 19 37 37 H 1.08004 * 119.99793 * 179.70267 * 27 13 12 38 38 H 1.07997 * 119.99105 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2941 0.0000 0.0000 3 14 2.2281 1.6178 0.0000 4 1 3.0818 1.6964 -1.2125 5 1 1.2631 2.7465 0.0006 6 1 3.0818 1.6963 1.2125 7 6 2.0269 -1.2693 -0.0006 8 1 3.1069 -1.2693 -0.0010 9 8 1.4154 -2.3284 -0.0006 10 6 2.1502 -3.4639 0.1070 11 6 3.5387 -3.3977 0.0855 12 6 4.2859 -4.5521 0.1895 13 6 3.6501 -5.7818 0.3264 14 7 4.4054 -6.9490 0.4374 15 6 5.6353 -6.9248 1.0998 16 7 6.2384 -5.8383 1.5871 17 6 7.3884 -6.1918 2.1525 18 6 8.3871 -5.4467 2.8039 19 6 9.4882 -6.0870 3.2929 20 6 9.6091 -7.4755 3.1392 21 6 8.6402 -8.1776 2.5092 22 7 7.5346 -7.5477 2.0164 23 6 6.4269 -8.0075 1.3534 24 7 6.1332 -9.4603 0.9693 25 8 5.4741 -10.2408 1.8005 26 8 6.5397 -9.9294 -0.1922 27 6 2.2607 -5.8475 0.3474 28 6 1.5143 -4.6933 0.2381 29 1 -0.4850 0.8401 0.0004 30 1 4.0323 -2.4426 -0.0171 31 1 5.3644 -4.5011 0.1687 32 1 4.0769 -7.7776 0.0547 33 1 8.2838 -4.3775 2.9160 34 1 10.2632 -5.5271 3.7951 35 1 10.4789 -7.9860 3.5253 36 1 8.7418 -9.2469 2.3959 37 1 1.7668 -6.8026 0.4488 38 1 0.4357 -4.7444 0.2539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032806301.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:45 Heat of formation + Delta-G solvation = 180.458215 kcal Electronic energy + Delta-G solvation = -27736.204460 eV Core-core repulsion = 23553.169844 eV Total energy + Delta-G solvation = -4183.034616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.100 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -43.41536 -40.10378 -38.96043 -38.54339 -37.29283 -34.72786 -34.65435 -34.01780 -32.62378 -30.46826 -30.12310 -29.86992 -27.76721 -26.37406 -25.15452 -23.95341 -23.15339 -22.40741 -21.54190 -20.75567 -19.22057 -18.60501 -18.48199 -18.02605 -17.41985 -17.09733 -16.61155 -16.48644 -15.91919 -15.85715 -15.22321 -14.88927 -14.72325 -14.44976 -14.23334 -13.57670 -13.35938 -12.93780 -12.85263 -12.54932 -12.42379 -12.07428 -11.79893 -11.71892 -11.67022 -11.58968 -11.51157 -11.18282 -10.98547 -10.79605 -10.57155 -10.45764 -10.23550 -9.19448 -9.08135 -8.61194 -8.49488 -8.10820 -6.88260 -6.79620 -3.66188 -0.62611 0.20887 0.29341 0.48615 1.95807 2.04432 2.35190 2.50215 2.95077 3.00699 3.02415 3.03883 3.09120 3.65994 3.82716 4.05547 4.13447 4.35627 4.45945 4.52358 4.68962 4.99085 4.99694 5.18812 5.20395 5.42259 5.45524 5.61819 5.73813 5.83373 5.87582 6.21663 6.24202 6.34571 6.38505 6.52616 6.74989 6.90047 6.96314 7.07528 7.27784 7.43716 7.45098 7.70896 7.85058 8.02276 8.61884 9.95515 10.42610 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014710 B = 0.002760 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.958677 B =10144.021221 C =11779.117482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.038 3.962 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.402 4.402 8 H 0.088 0.912 9 O -0.110 6.110 10 C 0.103 3.897 11 C -0.235 4.235 12 C -0.052 4.052 13 C 0.008 3.992 14 N -0.624 5.624 15 C 0.437 3.563 16 N -0.494 5.494 17 C 0.304 3.696 18 C -0.091 4.091 19 C -0.074 4.074 20 C -0.142 4.142 21 C 0.063 3.937 22 N -0.332 5.332 23 C -0.087 4.087 24 N -0.006 5.006 25 O -0.124 6.124 26 O -0.127 6.127 27 C -0.085 4.085 28 C -0.180 4.180 29 H 0.283 0.717 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.412 0.588 33 H 0.167 0.833 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.110 0.890 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.476 -11.394 6.182 22.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.175 4.175 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.481 4.481 8 H 0.106 0.894 9 O -0.006 6.006 10 C 0.047 3.953 11 C -0.256 4.256 12 C -0.072 4.072 13 C -0.084 4.084 14 N -0.248 5.248 15 C 0.199 3.801 16 N -0.224 5.224 17 C 0.062 3.938 18 C -0.112 4.112 19 C -0.098 4.098 20 C -0.163 4.163 21 C -0.062 4.062 22 N -0.009 5.009 23 C -0.279 4.279 24 N 0.492 4.508 25 O -0.331 6.331 26 O -0.333 6.333 27 C -0.106 4.106 28 C -0.201 4.201 29 H 0.095 0.905 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.249 0.751 33 H 0.184 0.816 34 H 0.170 0.830 35 H 0.177 0.823 36 H 0.178 0.822 37 H 0.128 0.872 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 17.622 -9.576 6.209 20.994 hybrid contribution 0.641 -1.036 -0.220 1.238 sum 18.263 -10.612 5.988 21.954 Atomic orbital electron populations 1.68928 1.07810 1.29641 1.38540 1.26842 0.95152 0.98694 0.96777 0.85720 0.79102 0.78635 0.79876 1.19019 1.20078 1.18987 1.20773 0.92913 0.82671 1.51729 0.89444 1.80298 1.36938 1.11827 1.71565 1.19373 0.89994 0.87115 0.98821 1.20643 0.93256 0.98201 1.13492 1.20667 0.99238 0.90549 0.96790 1.17004 0.89586 0.84836 1.17009 1.41183 1.15280 1.11974 1.56385 1.17043 0.87295 0.85312 0.90496 1.71186 1.05906 1.23760 1.21582 1.20887 0.95215 0.78406 0.99243 1.20467 0.90985 1.01323 0.98444 1.21258 0.97313 0.94030 0.97201 1.20864 0.99257 0.94825 1.01374 1.21794 0.85971 0.99496 0.98944 1.41855 1.12990 1.09770 1.36335 1.19812 0.98742 0.79135 1.30255 1.50740 0.97866 1.01053 1.01169 1.96293 1.37190 1.53679 1.45901 1.96291 1.53519 1.77886 1.05603 1.20224 0.91210 0.97298 1.01861 1.19747 0.98968 0.89648 1.11691 0.90459 0.85716 0.85927 0.75134 0.81601 0.82953 0.82325 0.82209 0.87238 0.86479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.35 13.66 55.98 0.76 -21.58 16 2 C 0.04 0.99 5.69 -15.22 -0.09 0.90 16 3 Si 0.94 19.24 29.64 -169.99 -5.04 14.21 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.40 -10.85 9.47 34.09 0.32 -10.53 16 8 H 0.09 2.22 5.02 -52.49 -0.26 1.96 16 9 O -0.11 -3.05 9.28 21.15 0.20 -2.85 16 10 C 0.10 2.51 6.59 -39.00 -0.26 2.25 16 11 C -0.24 -5.31 9.11 -39.41 -0.36 -5.67 16 12 C -0.05 -1.06 8.82 -39.38 -0.35 -1.41 16 13 C 0.01 0.16 6.38 -83.74 -0.53 -0.37 16 14 N -0.62 -10.42 5.52 -10.19 -0.06 -10.48 16 15 C 0.44 7.19 7.47 -154.36 -1.15 6.04 16 16 N -0.49 -8.01 8.52 -11.80 -0.10 -8.11 16 17 C 0.30 3.90 7.79 -155.87 -1.21 2.68 16 18 C -0.09 -0.77 10.11 -39.34 -0.40 -1.17 16 19 C -0.07 -0.39 10.07 -39.49 -0.40 -0.79 16 20 C -0.14 -0.76 9.99 -39.91 -0.40 -1.16 16 21 C 0.06 0.53 10.95 -16.57 -0.18 0.35 16 22 N -0.33 -4.12 2.95 -57.16 -0.17 -4.29 16 23 C -0.09 -1.30 8.19 -136.18 -1.12 -2.42 16 24 N -0.01 -0.09 5.16 34.74 0.18 0.09 16 25 O -0.12 -1.90 20.02 -31.57 -0.63 -2.53 16 26 O -0.13 -1.93 20.02 -31.57 -0.63 -2.56 16 27 C -0.09 -1.62 9.96 -39.39 -0.39 -2.02 16 28 C -0.18 -3.90 9.98 -39.42 -0.39 -4.29 16 29 H 0.28 6.96 8.26 -40.82 -0.34 6.63 16 30 H 0.13 2.78 5.69 -52.49 -0.30 2.48 16 31 H 0.12 2.38 6.15 -52.49 -0.32 2.06 16 32 H 0.41 6.09 8.94 -40.82 -0.36 5.73 16 33 H 0.17 1.13 8.06 -52.48 -0.42 0.70 16 34 H 0.15 0.30 8.06 -52.49 -0.42 -0.12 16 35 H 0.16 0.30 8.06 -52.49 -0.42 -0.12 16 36 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 38 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 LS Contribution 349.06 15.07 5.26 5.26 Total: -1.00 -31.85 349.06 -10.05 -41.90 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -2.92 Total: 8.54 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -6.91 Total: -17.60 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.62 Total: -44.37 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -1.07 Total: -7.94 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.04 Total: 14.21 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.85 -10.05 -41.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032806301.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.360 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds