Wall clock time and date at job start Tue Mar 31 2020 05:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 114.00048 * 2 1 4 4 C 1.52999 * 109.47126 * 179.97438 * 3 2 1 5 5 O 1.45200 * 109.47239 * 64.99615 * 4 3 2 6 6 C 1.34878 * 116.99782 * 179.97438 * 5 4 3 7 7 O 1.21618 * 120.00425 * 359.97438 * 6 5 4 8 8 C 1.46656 * 119.99785 * 180.02562 * 6 5 4 9 9 C 1.43203 * 119.99936 * 0.02562 * 8 6 5 10 10 N 5.34260 * 121.06339 * 257.88841 * 2 1 3 11 11 C 1.38628 * 120.00338 * 180.02562 * 8 6 5 12 12 C 1.41130 * 120.00098 * 172.38779 * 11 8 6 13 13 C 1.38268 * 126.87507 * 341.75645 * 12 11 8 14 14 N 1.35560 * 109.42943 * 180.20139 * 13 12 11 15 15 C 1.36877 * 124.72194 * 179.82715 * 14 13 12 16 16 H 1.07999 * 120.00523 * 158.96259 * 15 14 13 17 17 C 1.39111 * 119.99926 * 338.95665 * 15 14 13 18 18 N 1.31246 * 120.00332 * 158.83411 * 17 15 14 19 19 Si 1.86804 * 120.00189 * 338.83563 * 17 15 14 20 20 H 1.48500 * 109.47090 * 84.24934 * 19 17 15 21 21 H 1.48501 * 109.47208 * 204.25457 * 19 17 15 22 22 H 1.48504 * 109.46716 * 324.25463 * 19 17 15 23 23 C 1.38473 * 110.55809 * 359.56063 * 14 13 12 24 24 C 1.39018 * 132.90613 * 180.26857 * 23 14 13 25 25 C 1.37934 * 119.95744 * 180.02562 * 24 23 14 26 26 C 1.38624 * 120.59855 * 359.94870 * 25 24 23 27 27 C 1.37964 * 120.23826 * 0.04987 * 26 25 24 28 28 C 1.39065 * 119.69650 * 359.97404 * 27 26 25 29 29 H 1.09001 * 109.46989 * 299.99825 * 1 2 3 30 30 H 1.08998 * 109.46677 * 60.00616 * 1 2 3 31 31 H 1.08997 * 109.46635 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47236 * 59.99799 * 3 2 1 33 33 H 1.08995 * 109.46571 * 299.99730 * 3 2 1 34 34 H 1.09005 * 109.47026 * 304.99851 * 4 3 2 35 35 H 1.08999 * 109.47190 * 185.00162 * 4 3 2 36 36 H 1.07997 * 119.99638 * 352.39027 * 11 8 6 37 37 H 1.07997 * 125.29051 * 0.02624 * 13 12 11 38 38 H 0.97003 * 120.00690 * 180.02562 * 18 17 15 39 39 H 1.07993 * 120.02097 * 359.97010 * 24 23 14 40 40 H 1.07995 * 119.70042 * 179.97438 * 25 24 23 41 41 H 1.07995 * 119.87776 * 180.02562 * 26 25 24 42 42 H 1.07997 * 120.14834 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9728 0.5694 -1.2397 6 6 5.3000 0.3898 -1.3995 7 8 6.0705 0.7387 -0.5255 8 6 5.8142 -0.2251 -2.6276 9 6 4.9071 -0.6345 -3.6573 10 7 4.1857 -0.9602 -4.4746 11 6 7.1782 -0.4102 -2.7916 12 6 7.6630 -1.1440 -3.8954 13 6 6.9458 -2.0201 -4.6890 14 7 7.7594 -2.5324 -5.6446 15 6 7.3712 -3.4355 -6.5970 16 1 7.9445 -3.5418 -7.5061 17 6 6.2382 -4.2167 -6.3940 18 7 5.6241 -4.7610 -7.4183 19 14 5.5906 -4.4910 -4.6634 20 1 4.7205 -3.3523 -4.2741 21 1 4.8052 -5.7507 -4.6226 22 1 6.7314 -4.5881 -3.7176 23 6 9.0366 -2.0103 -5.5268 24 6 10.2088 -2.2049 -6.2483 25 6 11.3579 -1.5311 -5.8902 26 6 11.3571 -0.6570 -4.8143 27 6 10.2029 -0.4516 -4.0869 28 6 9.0382 -1.1254 -4.4379 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8508 0.5685 0.8428 35 1 3.9785 2.1765 0.0902 36 1 7.8698 0.0070 -2.0747 37 1 5.9004 -2.2613 -4.5649 38 1 4.8338 -5.3054 -7.2768 39 1 10.2200 -2.8838 -7.0881 40 1 12.2663 -1.6857 -6.4533 41 1 12.2633 -0.1352 -4.5444 42 1 10.2040 0.2295 -3.2487 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033626764.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:49 Heat of formation + Delta-G solvation = -17.776076 kcal Electronic energy + Delta-G solvation = -28273.571998 eV Core-core repulsion = 24185.481641 eV Total energy + Delta-G solvation = -4088.090357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.00699 -39.90853 -38.00414 -36.96126 -36.32339 -35.86601 -34.17092 -33.10862 -31.18426 -30.55198 -29.62315 -28.21058 -26.58329 -26.00941 -24.10144 -22.85544 -22.15387 -21.33363 -20.81954 -20.08268 -18.15540 -17.94941 -16.98803 -16.69991 -16.34399 -16.14926 -15.68519 -15.53463 -15.31564 -14.98629 -14.67277 -14.47271 -14.08759 -13.74038 -13.41187 -13.36845 -13.02590 -12.89157 -12.75331 -12.64911 -12.52574 -12.30425 -11.96473 -11.72136 -11.61896 -11.46291 -11.40733 -11.35792 -10.97108 -10.84176 -10.53001 -10.43976 -10.40286 -10.19419 -9.92657 -9.82243 -9.34459 -8.56063 -7.88140 -7.38358 -7.07939 -4.81848 0.74978 1.67606 2.20031 2.79932 2.85903 2.90113 2.95986 2.98014 3.37243 3.53245 3.57359 3.58483 3.76770 4.16539 4.40530 4.49068 4.74601 4.79405 4.95967 5.04212 5.12560 5.15509 5.20678 5.28825 5.35483 5.39040 5.48995 5.51694 5.53187 5.70994 5.72148 5.87027 6.05938 6.08521 6.28265 6.36083 6.49525 6.57698 6.77142 6.84218 6.91290 6.96027 7.01257 7.12850 7.28185 7.42200 7.65291 8.16046 8.23801 8.41582 8.46873 9.64789 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011364 B = 0.003663 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.243643 B = 7641.763861 C = 9729.719901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.070 3.930 5 O -0.350 6.350 6 C 0.535 3.465 7 O -0.535 6.535 8 C -0.248 4.248 9 C 0.277 3.723 10 N -0.453 5.453 11 C 0.162 3.838 12 C -0.263 4.263 13 C 0.018 3.982 14 N -0.236 5.236 15 C -0.335 4.335 16 H 0.135 0.865 17 C 0.079 3.921 18 N -0.787 5.787 19 Si 0.872 3.128 20 H -0.239 1.239 21 H -0.271 1.271 22 H -0.246 1.246 23 C 0.039 3.961 24 C -0.082 4.082 25 C -0.139 4.139 26 C -0.128 4.128 27 C -0.101 4.101 28 C -0.048 4.048 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.144 0.856 37 H 0.183 0.817 38 H 0.298 0.702 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.167 7.793 10.152 12.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.015 4.015 4 C -0.004 4.004 5 O -0.267 6.267 6 C 0.385 3.615 7 O -0.428 6.428 8 C -0.256 4.256 9 C -0.034 4.034 10 N -0.132 5.132 11 C 0.138 3.862 12 C -0.269 4.269 13 C -0.130 4.130 14 N 0.109 4.891 15 C -0.464 4.464 16 H 0.152 0.848 17 C -0.141 4.141 18 N -0.412 5.412 19 Si 0.696 3.304 20 H -0.164 1.164 21 H -0.197 1.197 22 H -0.169 1.169 23 C -0.064 4.064 24 C -0.101 4.101 25 C -0.158 4.158 26 C -0.147 4.147 27 C -0.119 4.119 28 C -0.051 4.051 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.162 0.838 37 H 0.199 0.801 38 H 0.109 0.891 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.150 6.830 8.716 11.133 hybrid contribution -0.470 0.013 0.964 1.072 sum -1.619 6.844 9.680 11.965 Atomic orbital electron populations 1.22748 0.81020 1.02954 0.99791 1.88000 1.19671 1.27146 1.95366 1.22619 0.91930 0.85752 1.01211 1.22962 0.92757 0.98777 0.85899 1.86693 1.25701 1.74172 1.40109 1.20281 0.79875 0.75317 0.86071 1.90808 1.57766 1.50959 1.43306 1.16387 0.90603 1.24543 0.94017 1.25279 0.92630 0.92651 0.92816 1.81269 1.09541 1.11510 1.10854 1.20932 0.91886 0.82965 0.90408 1.17719 0.92933 1.11234 1.04997 1.23377 0.97471 0.99084 0.93079 1.40403 1.05451 1.24851 1.18392 1.19834 1.11876 1.16163 0.98526 0.84752 1.25448 0.94265 0.94280 1.00110 1.69598 1.15454 1.24518 1.31626 0.86972 0.81444 0.79908 0.82117 1.16446 1.19686 1.16949 1.18476 0.86318 1.01492 1.00099 1.20177 0.90243 1.00315 0.99371 1.20650 0.97090 0.99122 0.98979 1.20847 0.97521 0.99727 0.96557 1.20337 0.91054 1.00259 1.00260 1.18953 0.92776 0.97679 0.95687 0.94211 0.93937 0.89551 0.91206 0.92079 0.90439 0.89688 0.83801 0.80109 0.89068 0.86170 0.86266 0.86420 0.86150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.13 10.67 -38.80 -0.41 -5.55 16 3 C 0.06 0.67 6.33 37.16 0.24 0.90 16 4 C 0.07 0.90 5.86 37.16 0.22 1.12 16 5 O -0.35 -6.02 9.73 -43.77 -0.43 -6.44 16 6 C 0.53 9.69 7.87 34.13 0.27 9.96 16 7 O -0.54 -9.84 16.10 -19.36 -0.31 -10.15 16 8 C -0.25 -4.75 5.90 -104.43 -0.62 -5.37 16 9 C 0.28 6.01 11.55 -22.42 -0.26 5.75 16 10 N -0.45 -10.61 16.60 41.90 0.70 -9.91 16 11 C 0.16 2.92 9.60 -38.34 -0.37 2.55 16 12 C -0.26 -5.39 5.91 -104.86 -0.62 -6.01 16 13 C 0.02 0.43 7.16 -15.89 -0.11 0.31 16 14 N -0.24 -5.52 2.73 -59.08 -0.16 -5.68 16 15 C -0.34 -8.23 10.27 -14.98 -0.15 -8.38 16 16 H 0.14 3.30 8.06 -52.49 -0.42 2.88 16 17 C 0.08 1.93 5.43 -17.48 -0.09 1.84 16 18 N -0.79 -19.63 13.95 55.50 0.77 -18.86 16 19 Si 0.87 19.59 24.97 -169.99 -4.24 15.35 16 20 H -0.24 -5.53 5.02 56.52 0.28 -5.25 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.25 -5.55 7.11 56.52 0.40 -5.15 16 23 C 0.04 0.81 6.72 -83.80 -0.56 0.25 16 24 C -0.08 -1.46 9.91 -39.40 -0.39 -1.85 16 25 C -0.14 -2.07 10.02 -39.55 -0.40 -2.46 16 26 C -0.13 -1.82 10.04 -39.54 -0.40 -2.22 16 27 C -0.10 -1.60 10.09 -39.38 -0.40 -2.00 16 28 C -0.05 -0.94 6.33 -104.88 -0.66 -1.60 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.14 2.18 7.62 -52.49 -0.40 1.78 16 37 H 0.18 4.32 1.31 -52.49 -0.07 4.25 16 38 H 0.30 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 40 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 42 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -29.24 368.48 -6.53 -35.77 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -4.79 Total: 5.73 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -3.20 Total: -5.81 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 1.31 Total: -34.45 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -1.15 Total: -22.14 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.24 Total: 15.35 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.24 -6.53 -35.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033626764.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.991 kcal (2) G-P(sol) polarization free energy of solvation -29.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds