Wall clock time and date at job start Tue Mar 31 2020 05:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38239 * 119.99922 * 2 1 4 4 C 1.38229 * 119.99668 * 179.72741 * 3 2 1 5 5 C 1.38233 * 120.00344 * 0.28297 * 4 3 2 6 6 S 1.76202 * 120.00163 * 179.97438 * 5 4 3 7 7 O 1.42099 * 106.40207 * 203.53523 * 6 5 4 8 8 O 1.42099 * 106.40096 * 336.46059 * 6 5 4 9 9 N 1.65601 * 107.22042 * 89.99613 * 6 5 4 10 10 C 1.36646 * 125.58686 * 114.68945 * 9 6 5 11 11 C 1.34733 * 109.70026 * 179.88482 * 10 9 6 12 12 C 1.41591 * 107.92748 * 0.37894 * 11 10 9 13 13 C 1.40523 * 133.31741 * 179.79102 * 12 11 10 14 14 C 1.35719 * 120.15564 * 179.97438 * 13 12 11 15 15 C 1.41257 * 120.33749 * 0.02562 * 14 13 12 16 16 C 1.41021 * 119.97307 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00047 * 154.50668 * 16 15 14 18 18 C 1.39891 * 119.99922 * 334.51082 * 16 15 14 19 19 N 1.30879 * 119.99971 * 342.40153 * 18 16 15 20 20 Si 1.86796 * 120.00142 * 162.39597 * 18 16 15 21 21 H 1.48499 * 109.47247 * 89.99816 * 20 18 16 22 22 H 1.48505 * 109.47335 * 210.00247 * 20 18 16 23 23 H 1.48506 * 109.47155 * 329.99891 * 20 18 16 24 24 C 1.40598 * 120.05668 * 0.02562 * 15 14 13 25 25 C 1.38091 * 125.58957 * 295.00329 * 9 6 5 26 26 C 1.38236 * 120.00326 * 359.97181 * 5 4 3 27 27 C 1.38233 * 119.99448 * 359.96106 * 26 5 4 28 28 H 1.09000 * 109.47629 * 89.99774 * 1 2 3 29 29 H 1.09006 * 109.47031 * 209.99714 * 1 2 3 30 30 H 1.09005 * 109.47409 * 329.99140 * 1 2 3 31 31 H 1.07996 * 119.99629 * 0.02562 * 3 2 1 32 32 H 1.08005 * 119.99828 * 180.26041 * 4 3 2 33 33 H 1.07998 * 125.15287 * 0.04247 * 10 9 6 34 34 H 1.08003 * 126.03746 * 180.15071 * 11 10 9 35 35 H 1.08002 * 119.91654 * 359.95419 * 13 12 11 36 36 H 1.08002 * 119.83094 * 180.02562 * 14 13 12 37 37 H 0.96996 * 120.00220 * 180.02562 * 19 18 16 38 38 H 1.07993 * 120.20838 * 180.02562 * 24 15 14 39 39 H 1.07990 * 120.00439 * 179.97438 * 26 5 4 40 40 H 1.08001 * 120.00233 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1971 0.0057 5 6 4.2716 0.0000 0.0055 6 16 6.0336 0.0000 0.0121 7 8 6.4369 -1.2485 -0.5337 8 8 6.4369 1.2510 -0.5279 9 7 6.5180 -0.0036 1.5956 10 6 7.1944 -1.0147 2.2180 11 6 7.4283 -0.6814 3.5024 12 6 6.8717 0.6007 3.7283 13 6 6.8060 1.4384 4.8546 14 6 6.1922 2.6460 4.7714 15 6 5.6145 3.0703 3.5542 16 6 4.9781 4.3263 3.4765 17 1 4.9046 4.8366 2.5275 18 6 4.4421 4.9113 4.6286 19 7 4.2160 4.1793 5.6897 20 14 4.0493 6.7374 4.6528 21 1 2.6523 6.9493 4.1958 22 1 4.2025 7.2585 6.0349 23 1 4.9809 7.4562 3.7467 24 6 5.6726 2.2410 2.4203 25 6 6.2991 1.0121 2.5053 26 6 3.5805 -1.1972 0.0002 27 6 2.1982 -1.1972 -0.0041 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5140 31 1 1.6581 2.1324 0.0004 32 1 4.1204 2.1325 0.0099 33 1 7.4980 -1.9397 1.7505 34 1 7.9456 -1.2870 4.2318 35 1 7.2448 1.1202 5.7888 36 1 6.1451 3.2857 5.6403 37 1 3.8441 4.5848 6.4885 38 1 5.2321 2.5631 1.4884 39 1 4.1205 -2.1324 -0.0004 40 1 1.6582 -2.1325 -0.0079 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034404573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:24 Heat of formation + Delta-G solvation = 5.720200 kcal Electronic energy + Delta-G solvation = -27031.845566 eV Core-core repulsion = 23289.808294 eV Total energy + Delta-G solvation = -3742.037273 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.087 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.34326 -39.32307 -37.21398 -36.22534 -35.79400 -33.35362 -33.10624 -31.36562 -31.02863 -28.72554 -28.48845 -27.36166 -24.96581 -22.90483 -22.03917 -21.84112 -20.92055 -20.33379 -18.85919 -18.29291 -17.38998 -16.66414 -15.93831 -15.55576 -15.38802 -15.19723 -14.72056 -14.48620 -14.11599 -13.88665 -13.82639 -13.66161 -13.56294 -12.70245 -12.56959 -12.45693 -12.39389 -12.28961 -12.17032 -12.00053 -11.93165 -11.74900 -11.59101 -11.23723 -11.17406 -10.97150 -10.72223 -10.71458 -10.36416 -10.21269 -9.52213 -9.32965 -9.13836 -9.01099 -8.78494 -7.28081 -7.12200 -6.87167 -4.49186 0.31415 0.83452 1.33620 2.17409 2.85940 2.88735 2.97925 3.00968 3.05645 3.46699 3.58818 3.79275 3.86710 4.39481 4.51247 4.67612 4.72929 4.89680 5.12855 5.17726 5.29151 5.38450 5.53053 5.54968 5.58476 5.78840 5.84597 5.93243 5.99829 6.10625 6.16031 6.30136 6.40738 6.44581 6.72707 6.80043 6.85674 6.91455 6.99060 7.14182 7.37923 7.63833 7.79282 7.86549 7.90423 8.08034 8.41012 8.68092 8.75613 9.96014 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.009659 B = 0.004995 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.191053 B = 5604.445036 C = 7369.497916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.030 4.030 3 C -0.138 4.138 4 C 0.001 3.999 5 C -0.677 4.677 6 S 2.686 3.314 7 O -0.953 6.953 8 O -0.937 6.937 9 N -0.824 5.824 10 C -0.045 4.045 11 C -0.118 4.118 12 C -0.203 4.203 13 C -0.070 4.070 14 C -0.147 4.147 15 C 0.142 3.858 16 C -0.446 4.446 17 H 0.084 0.916 18 C 0.076 3.924 19 N -0.782 5.782 20 Si 0.911 3.089 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.265 4.265 25 C 0.146 3.854 26 C -0.013 4.013 27 C -0.147 4.147 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.135 0.865 32 H 0.145 0.855 33 H 0.168 0.832 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.285 0.715 38 H 0.098 0.902 39 H 0.138 0.862 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.408 -6.814 -5.765 10.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.030 4.030 3 C -0.157 4.157 4 C -0.018 4.018 5 C -0.765 4.765 6 S 2.782 3.218 7 O -0.944 6.944 8 O -0.927 6.927 9 N -0.628 5.628 10 C -0.162 4.162 11 C -0.144 4.144 12 C -0.208 4.208 13 C -0.090 4.090 14 C -0.166 4.166 15 C 0.138 3.862 16 C -0.475 4.475 17 H 0.102 0.898 18 C -0.144 4.144 19 N -0.406 5.406 20 Si 0.734 3.266 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.181 1.181 24 C -0.289 4.289 25 C 0.047 3.953 26 C -0.033 4.033 27 C -0.166 4.166 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.152 0.848 32 H 0.163 0.837 33 H 0.185 0.815 34 H 0.150 0.850 35 H 0.115 0.885 36 H 0.141 0.859 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.156 0.844 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.010 -6.844 -6.509 10.692 hybrid contribution -0.922 0.660 0.459 1.223 sum -5.933 -6.185 -6.050 10.491 Atomic orbital electron populations 1.20931 0.90648 1.03556 1.02728 1.20275 0.96430 0.93340 0.92944 1.21187 0.94049 0.98124 1.02370 1.21068 0.94960 0.96717 0.89103 1.30590 1.25927 0.99981 1.20042 1.02189 0.74167 0.73845 0.71624 1.93553 1.81706 1.43767 1.75343 1.93623 1.80710 1.43314 1.75034 1.52893 1.58487 1.22945 1.28448 1.21346 1.05948 0.94330 0.94608 1.20776 1.02669 0.96117 0.94809 1.17976 1.11410 0.97159 0.94233 1.20024 0.99475 0.94287 0.95183 1.21056 0.99934 0.96431 0.99199 1.17303 0.87836 0.91129 0.89903 1.19593 1.30686 1.01817 0.95359 0.89770 1.25990 0.93274 1.00472 0.94662 1.69840 1.29810 1.37421 1.03523 0.86257 0.79747 0.81748 0.78799 1.19311 1.19875 1.18130 1.19924 1.14872 0.93309 1.00814 1.17999 0.99830 0.89478 0.88037 1.20851 0.94820 0.96267 0.91322 1.21092 0.93948 0.97914 1.03668 0.90506 0.91027 0.90762 0.84753 0.83699 0.81497 0.85015 0.88534 0.85860 0.90423 0.88381 0.84402 0.85149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 10.01 36.00 0.36 -0.73 16 2 C -0.03 -0.37 5.88 -104.62 -0.62 -0.99 16 3 C -0.14 -1.97 9.70 -39.58 -0.38 -2.35 16 4 C 0.00 0.01 9.01 -39.59 -0.36 -0.34 16 5 C -0.68 -11.50 5.97 -39.58 -0.24 -11.74 16 6 S 2.69 50.55 5.66 -107.50 -0.61 49.94 16 7 O -0.95 -17.88 16.52 -57.17 -0.94 -18.82 16 8 O -0.94 -19.78 16.97 -57.17 -0.97 -20.75 16 9 N -0.82 -16.80 3.17 -10.59 -0.03 -16.83 16 10 C -0.05 -0.84 10.89 -16.65 -0.18 -1.02 16 11 C -0.12 -2.25 10.85 -39.55 -0.43 -2.68 16 12 C -0.20 -4.60 6.19 -106.65 -0.66 -5.26 16 13 C -0.07 -1.59 10.03 -39.62 -0.40 -1.99 16 14 C -0.15 -3.61 8.59 -39.34 -0.34 -3.95 16 15 C 0.14 3.63 5.56 -106.81 -0.59 3.03 16 16 C -0.45 -11.08 9.01 -37.91 -0.34 -11.42 16 17 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 18 C 0.08 1.76 5.12 -17.34 -0.09 1.67 16 19 N -0.78 -18.68 10.98 55.54 0.61 -18.07 16 20 Si 0.91 17.36 29.59 -169.99 -5.03 12.32 16 21 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 22 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 23 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 24 C -0.27 -6.47 9.58 -38.70 -0.37 -6.84 16 25 C 0.15 3.39 6.71 -83.95 -0.56 2.83 16 26 C -0.01 -0.19 9.52 -39.58 -0.38 -0.57 16 27 C -0.15 -1.87 9.70 -39.58 -0.38 -2.25 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 30 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 31 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 32 H 0.15 2.46 6.01 -52.48 -0.32 2.14 16 33 H 0.17 2.52 7.89 -52.49 -0.41 2.11 16 34 H 0.13 2.06 8.06 -52.48 -0.42 1.64 16 35 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 36 H 0.12 3.05 6.18 -52.49 -0.32 2.72 16 37 H 0.28 6.15 8.30 -40.82 -0.34 5.81 16 38 H 0.10 2.26 5.71 -52.49 -0.30 1.96 16 39 H 0.14 1.79 7.62 -52.49 -0.40 1.39 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 352.72 15.07 5.32 5.32 Total: -1.00 -30.13 352.72 -11.88 -42.01 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -4.26 Total: 9.50 kcal Atomic # 6 Polarization: -38.64 SS G_CDS: -5.96 Total: -44.60 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.58 Total: -34.91 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -1.91 Total: -39.58 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.32 kcal Atomic # 16 Polarization: 50.55 SS G_CDS: -0.61 Total: 49.94 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.13 -11.88 -42.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034404573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.726 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds