Wall clock time and date at job start Tue Mar 31 2020 05:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38239 * 119.99922 * 2 1 4 4 C 1.38229 * 119.99668 * 179.72741 * 3 2 1 5 5 C 1.38233 * 120.00344 * 0.28297 * 4 3 2 6 6 S 1.76202 * 120.00163 * 179.97438 * 5 4 3 7 7 O 1.42099 * 106.40207 * 203.53523 * 6 5 4 8 8 O 1.42099 * 106.40096 * 336.46059 * 6 5 4 9 9 N 1.65601 * 107.22042 * 89.99613 * 6 5 4 10 10 C 1.36646 * 125.58686 * 114.68945 * 9 6 5 11 11 C 1.34733 * 109.70026 * 179.88482 * 10 9 6 12 12 C 1.41591 * 107.92748 * 0.37894 * 11 10 9 13 13 C 1.40523 * 133.31741 * 179.79102 * 12 11 10 14 14 C 1.35719 * 120.15564 * 179.97438 * 13 12 11 15 15 C 1.41257 * 120.33749 * 0.02562 * 14 13 12 16 16 C 1.41021 * 119.97307 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00047 * 154.50668 * 16 15 14 18 18 C 1.39891 * 119.99922 * 334.51082 * 16 15 14 19 19 N 1.30879 * 119.99971 * 342.40153 * 18 16 15 20 20 Si 1.86796 * 120.00142 * 162.39597 * 18 16 15 21 21 H 1.48499 * 109.47247 * 89.99816 * 20 18 16 22 22 H 1.48505 * 109.47335 * 210.00247 * 20 18 16 23 23 H 1.48506 * 109.47155 * 329.99891 * 20 18 16 24 24 C 1.40598 * 120.05668 * 0.02562 * 15 14 13 25 25 C 1.38091 * 125.58957 * 295.00329 * 9 6 5 26 26 C 1.38236 * 120.00326 * 359.97181 * 5 4 3 27 27 C 1.38233 * 119.99448 * 359.96106 * 26 5 4 28 28 H 1.09000 * 109.47629 * 89.99774 * 1 2 3 29 29 H 1.09006 * 109.47031 * 209.99714 * 1 2 3 30 30 H 1.09005 * 109.47409 * 329.99140 * 1 2 3 31 31 H 1.07996 * 119.99629 * 0.02562 * 3 2 1 32 32 H 1.08005 * 119.99828 * 180.26041 * 4 3 2 33 33 H 1.07998 * 125.15287 * 0.04247 * 10 9 6 34 34 H 1.08003 * 126.03746 * 180.15071 * 11 10 9 35 35 H 1.08002 * 119.91654 * 359.95419 * 13 12 11 36 36 H 1.08002 * 119.83094 * 180.02562 * 14 13 12 37 37 H 0.96996 * 120.00220 * 180.02562 * 19 18 16 38 38 H 1.07993 * 120.20838 * 180.02562 * 24 15 14 39 39 H 1.07990 * 120.00439 * 179.97438 * 26 5 4 40 40 H 1.08001 * 120.00233 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1971 0.0057 5 6 4.2716 0.0000 0.0055 6 16 6.0336 0.0000 0.0121 7 8 6.4369 -1.2485 -0.5337 8 8 6.4369 1.2510 -0.5279 9 7 6.5180 -0.0036 1.5956 10 6 7.1944 -1.0147 2.2180 11 6 7.4283 -0.6814 3.5024 12 6 6.8717 0.6007 3.7283 13 6 6.8060 1.4384 4.8546 14 6 6.1922 2.6460 4.7714 15 6 5.6145 3.0703 3.5542 16 6 4.9781 4.3263 3.4765 17 1 4.9046 4.8366 2.5275 18 6 4.4421 4.9113 4.6286 19 7 4.2160 4.1793 5.6897 20 14 4.0493 6.7374 4.6528 21 1 2.6523 6.9493 4.1958 22 1 4.2025 7.2585 6.0349 23 1 4.9809 7.4562 3.7467 24 6 5.6726 2.2410 2.4203 25 6 6.2991 1.0121 2.5053 26 6 3.5805 -1.1972 0.0002 27 6 2.1982 -1.1972 -0.0041 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5140 31 1 1.6581 2.1324 0.0004 32 1 4.1204 2.1325 0.0099 33 1 7.4980 -1.9397 1.7505 34 1 7.9456 -1.2870 4.2318 35 1 7.2448 1.1202 5.7888 36 1 6.1451 3.2857 5.6403 37 1 3.8441 4.5848 6.4885 38 1 5.2321 2.5631 1.4884 39 1 4.1205 -2.1324 -0.0004 40 1 1.6582 -2.1325 -0.0079 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034404573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:24 Heat of formation + Delta-G solvation = -10.124645 kcal Electronic energy + Delta-G solvation = -27032.532651 eV Core-core repulsion = 23289.808294 eV Total energy + Delta-G solvation = -3742.724357 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.087 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.99990 -40.41540 -38.76077 -37.98334 -37.34817 -35.11387 -34.13243 -33.01788 -32.16232 -30.43927 -30.24501 -28.30069 -26.72800 -24.03196 -23.63359 -23.12077 -22.54991 -21.94846 -20.41546 -19.77229 -18.91104 -18.32145 -17.39384 -17.08528 -16.94084 -16.48550 -16.07873 -15.72539 -15.64911 -15.47590 -15.22395 -14.81251 -14.74435 -14.31201 -14.25488 -13.97763 -13.59543 -13.49272 -13.34548 -13.33263 -13.27299 -13.20131 -13.18001 -12.86763 -12.69966 -12.35420 -12.23303 -12.18709 -11.95368 -11.84893 -11.27382 -11.07137 -10.49135 -10.19545 -10.13705 -9.07714 -8.86104 -8.59811 -6.34635 -1.13100 -0.35167 0.21673 0.50261 1.06988 1.36539 1.40788 1.50786 1.55498 1.89624 2.19688 2.26945 2.50899 2.74637 2.96138 3.54235 3.63573 3.68721 3.77749 3.80276 4.14715 4.22159 4.25140 4.44080 4.55432 4.60108 4.67022 4.77780 4.81230 4.90564 4.95664 4.96258 5.02479 5.07104 5.14038 5.18610 5.30811 5.38996 5.40566 5.68382 5.78873 5.88341 5.98768 6.07886 6.16706 6.34491 6.57546 6.85133 6.92484 8.24775 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.009659 B = 0.004995 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.191053 B = 5604.445036 C = 7369.497916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.023 4.023 3 C -0.150 4.150 4 C -0.027 4.027 5 C -0.691 4.691 6 S 2.692 3.308 7 O -0.953 6.953 8 O -0.971 6.971 9 N -0.830 5.830 10 C -0.033 4.033 11 C -0.126 4.126 12 C -0.216 4.216 13 C -0.071 4.071 14 C -0.168 4.168 15 C 0.113 3.887 16 C -0.483 4.483 17 H 0.078 0.922 18 C 0.042 3.958 19 N -0.810 5.810 20 Si 0.981 3.019 21 H -0.260 1.260 22 H -0.262 1.262 23 H -0.261 1.261 24 C -0.282 4.282 25 C 0.127 3.873 26 C -0.024 4.024 27 C -0.143 4.143 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.150 0.850 32 H 0.125 0.875 33 H 0.206 0.794 34 H 0.171 0.829 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.294 0.706 38 H 0.095 0.905 39 H 0.156 0.844 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.929 -8.835 -5.712 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.024 4.024 3 C -0.169 4.169 4 C -0.046 4.046 5 C -0.782 4.782 6 S 2.791 3.209 7 O -0.943 6.943 8 O -0.962 6.962 9 N -0.632 5.632 10 C -0.149 4.149 11 C -0.151 4.151 12 C -0.221 4.221 13 C -0.090 4.090 14 C -0.187 4.187 15 C 0.109 3.891 16 C -0.511 4.511 17 H 0.096 0.904 18 C -0.175 4.175 19 N -0.435 5.435 20 Si 0.801 3.199 21 H -0.184 1.184 22 H -0.186 1.186 23 H -0.185 1.185 24 C -0.306 4.306 25 C 0.027 3.973 26 C -0.043 4.043 27 C -0.162 4.162 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.168 0.832 32 H 0.143 0.857 33 H 0.223 0.777 34 H 0.189 0.811 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.173 0.827 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.485 -8.885 -6.454 12.753 hybrid contribution -0.492 1.081 0.336 1.234 sum -6.977 -7.804 -6.118 12.125 Atomic orbital electron populations 1.21042 0.87544 1.04714 1.04380 1.20785 0.98630 0.92510 0.90435 1.21483 0.93129 1.00001 1.02284 1.21074 0.96338 0.96104 0.91107 1.30193 1.24012 1.01217 1.22821 1.01777 0.75008 0.73105 0.71017 1.93537 1.82430 1.43281 1.75097 1.93575 1.82060 1.44871 1.75683 1.53078 1.58893 1.22752 1.28509 1.22136 1.03641 0.94566 0.94563 1.21148 1.03046 0.94975 0.95958 1.18461 1.11154 0.98683 0.93770 1.20315 0.98616 0.93567 0.96506 1.21045 1.01451 0.97505 0.98750 1.17634 0.88760 0.91933 0.90742 1.19769 1.32627 1.02585 0.96129 0.90415 1.26741 0.92457 1.04572 0.93740 1.69865 1.30212 1.39236 1.04171 0.85214 0.79573 0.75980 0.79109 1.18425 1.18598 1.18517 1.20020 1.15715 0.94228 1.00638 1.18102 1.00163 0.89774 0.89292 1.21212 0.96134 0.95868 0.91096 1.21586 0.93183 0.99632 1.01783 0.88357 0.89122 0.90413 0.83223 0.85695 0.77704 0.81148 0.85759 0.86726 0.89529 0.88713 0.82686 0.81167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 10.01 71.23 0.71 -0.99 16 2 C -0.02 -0.53 5.88 -19.86 -0.12 -0.64 16 3 C -0.15 -4.24 9.70 22.27 0.22 -4.02 16 4 C -0.03 -0.93 9.01 22.27 0.20 -0.73 16 5 C -0.69 -23.70 5.97 22.27 0.13 -23.56 16 6 S 2.69 102.80 5.66 -56.49 -0.32 102.49 16 7 O -0.95 -34.87 16.52 -128.00 -2.12 -36.98 16 8 O -0.97 -43.23 16.97 -128.00 -2.17 -45.40 16 9 N -0.83 -33.82 3.17 -187.40 -0.59 -34.41 16 10 C -0.03 -1.13 10.89 83.14 0.91 -0.23 16 11 C -0.13 -4.54 10.85 22.29 0.24 -4.29 16 12 C -0.22 -9.74 6.19 -21.18 -0.13 -9.87 16 13 C -0.07 -3.26 10.03 22.24 0.22 -3.03 16 14 C -0.17 -8.62 8.59 22.43 0.19 -8.43 16 15 C 0.11 6.10 5.56 -21.28 -0.12 5.99 16 16 C -0.48 -25.42 9.01 23.35 0.21 -25.21 16 17 H 0.08 4.00 7.90 -2.91 -0.02 3.98 16 18 C 0.04 2.02 5.12 85.24 0.44 2.45 16 19 N -0.81 -39.84 10.98 21.82 0.24 -39.60 16 20 Si 0.98 36.25 29.59 68.60 2.03 38.28 16 21 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 22 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 23 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 24 C -0.28 -14.62 9.58 22.84 0.22 -14.40 16 25 C 0.13 6.06 6.71 38.87 0.26 6.32 16 26 C -0.02 -0.66 9.52 22.27 0.21 -0.44 16 27 C -0.14 -3.19 9.70 22.27 0.22 -2.98 16 28 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 0.99 8.09 -2.38 -0.02 0.97 16 30 H 0.08 1.09 8.09 -2.38 -0.02 1.07 16 31 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 32 H 0.13 4.71 6.01 -2.91 -0.02 4.69 16 33 H 0.21 5.43 7.89 -2.91 -0.02 5.41 16 34 H 0.17 4.68 8.06 -2.91 -0.02 4.65 16 35 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 36 H 0.11 5.94 6.18 -2.91 -0.02 5.92 16 37 H 0.29 12.88 8.30 -92.71 -0.77 12.11 16 38 H 0.09 4.78 5.71 -2.91 -0.02 4.77 16 39 H 0.16 3.65 7.62 -2.92 -0.02 3.62 16 40 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -68.75 352.72 2.16 -66.58 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: 1.08 Total: 33.12 kcal Atomic # 6 Polarization: -88.09 SS G_CDS: 4.01 Total: -84.08 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -0.36 Total: -74.01 kcal Atomic # 8 Polarization: -78.10 SS G_CDS: -4.29 Total: -82.38 kcal Atomic # 14 Polarization: 36.25 SS G_CDS: 2.03 Total: 38.28 kcal Atomic # 16 Polarization: 102.80 SS G_CDS: -0.32 Total: 102.49 kcal Total: -68.75 2.16 -66.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034404573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.460 kcal (2) G-P(sol) polarization free energy of solvation -68.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds