Wall clock time and date at job start Tue Mar 31 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37772 * 126.08185 * 2 1 4 4 C 1.47701 * 106.34230 * 179.97438 * 3 2 1 5 5 N 1.31198 * 106.93721 * 0.02562 * 4 3 2 6 6 N 1.34475 * 126.08572 * 179.97438 * 2 1 3 7 7 C 1.40075 * 125.05484 * 0.04157 * 6 2 1 8 8 C 1.38868 * 120.06821 * 222.23898 * 7 6 2 9 9 C 1.38112 * 119.92894 * 179.71859 * 8 7 6 10 10 C 1.38283 * 120.06603 * 0.58725 * 9 8 7 11 11 C 1.50703 * 119.92790 * 179.69662 * 10 9 8 12 12 C 1.38289 * 120.14292 * 359.67153 * 10 9 8 13 13 C 1.38101 * 120.06780 * 0.04454 * 12 10 9 14 14 C 1.46310 * 116.40983 * 180.22756 * 4 3 2 15 15 S 1.76196 * 120.96497 * 180.02562 * 14 4 3 16 16 C 1.76206 * 99.99994 * 180.02562 * 15 14 4 17 17 H 1.07995 * 119.99696 * 0.02562 * 16 15 14 18 18 C 1.38752 * 119.99687 * 180.02562 * 16 15 14 19 19 N 1.31569 * 120.00561 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99617 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46725 * 60.00559 * 20 18 16 22 22 H 1.48503 * 109.46805 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47244 * 300.00428 * 20 18 16 24 24 N 1.32197 * 118.06974 * 359.53881 * 14 4 3 25 25 N 1.27770 * 123.92080 * 0.50017 * 24 14 4 26 26 C 1.31021 * 125.05760 * 359.73060 * 25 24 14 27 27 C 1.50698 * 120.21008 * 180.02562 * 26 25 24 28 28 H 1.08994 * 109.47070 * 84.79427 * 1 2 3 29 29 H 1.08997 * 109.47015 * 204.79460 * 1 2 3 30 30 H 1.08995 * 109.46994 * 324.78971 * 1 2 3 31 31 H 1.08005 * 120.03695 * 0.02562 * 8 7 6 32 32 H 1.08001 * 119.96487 * 180.27370 * 9 8 7 33 33 H 1.08996 * 109.47044 * 269.97375 * 11 10 9 34 34 H 1.09001 * 109.47426 * 29.97080 * 11 10 9 35 35 H 1.09001 * 109.47359 * 149.97183 * 11 10 9 36 36 H 1.07996 * 119.96150 * 180.02562 * 12 10 9 37 37 H 1.07998 * 120.03655 * 179.97438 * 13 12 10 38 38 H 0.97001 * 120.00468 * 180.02562 * 19 18 16 39 39 H 1.09002 * 109.46997 * 269.97617 * 27 26 25 40 40 H 1.08991 * 109.47430 * 29.97342 * 27 26 25 41 41 H 1.09003 * 109.47239 * 149.97989 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3184 1.1134 0.0000 4 6 3.7086 0.6146 0.0006 5 7 3.6445 -0.6958 0.0004 6 7 2.2991 -1.0867 0.0005 7 6 1.8463 -2.4123 0.0002 8 6 2.4629 -3.3583 0.8085 9 6 2.0104 -4.6632 0.8104 10 6 0.9523 -5.0307 -0.0006 11 6 0.4654 -6.4569 -0.0012 12 6 0.3396 -4.0922 -0.8106 13 6 0.7836 -2.7845 -0.8126 14 6 4.7637 1.6282 0.0060 15 16 6.4642 1.1667 0.0066 16 6 7.2140 2.7612 0.0144 17 1 6.5974 3.6478 0.0177 18 6 8.5966 2.8776 0.0165 19 7 9.3478 1.7975 0.0120 20 14 9.3915 4.5681 0.0241 21 1 8.9673 5.3090 1.2392 22 1 10.8692 4.4202 0.0258 23 1 8.9700 5.3188 -1.1858 24 7 4.4043 2.9003 0.0004 25 7 3.1901 3.2982 -0.0001 26 6 2.1410 2.5133 -0.0003 27 6 0.7537 3.1019 -0.0015 28 1 -0.3633 0.0932 -1.0234 29 1 -0.3633 -0.9329 0.4310 30 1 -0.3633 0.8396 0.5925 31 1 3.2923 -3.0729 1.4387 32 1 2.4866 -5.3984 1.4421 33 1 1.0057 -7.0249 -0.7585 34 1 0.6398 -6.9008 0.9790 35 1 -0.6013 -6.4767 -0.2244 36 1 -0.4868 -4.3823 -1.4425 37 1 0.3050 -2.0520 -1.4457 38 1 10.3144 1.8789 0.0138 39 1 0.4184 3.2440 1.0259 40 1 0.7671 4.0629 -0.5154 41 1 0.0719 2.4243 -0.5157 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036646297.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:29 Heat of formation + Delta-G solvation = 137.730963 kcal Electronic energy + Delta-G solvation = -25637.817394 eV Core-core repulsion = 22031.515951 eV Total energy + Delta-G solvation = -3606.301443 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.105 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.62026 -39.63617 -38.23358 -34.22086 -33.75224 -32.81506 -31.82981 -31.16622 -30.74882 -28.26335 -27.36440 -26.58306 -25.69055 -24.03224 -23.27932 -21.91511 -21.55662 -19.91384 -17.94116 -17.83572 -17.38349 -16.24005 -16.08401 -15.68832 -15.22142 -15.03071 -14.90782 -14.23529 -14.12875 -13.90731 -13.80348 -13.71942 -13.35441 -13.16299 -13.06212 -12.62881 -12.57313 -12.32703 -12.15642 -11.97765 -11.70593 -11.48893 -11.37413 -11.15987 -11.13498 -10.65432 -10.36172 -10.26300 -9.70125 -9.58430 -9.33742 -9.29052 -9.15471 -8.51975 -8.40332 -8.21081 -6.67138 -6.58533 -4.22425 0.39189 1.00409 1.14117 2.15410 2.22872 2.50997 2.90293 3.20341 3.20795 3.28465 3.33451 3.95229 4.25875 4.33479 4.37480 4.48643 4.49616 4.61877 4.78460 4.89460 4.89648 4.97209 4.99359 5.14146 5.17447 5.22957 5.24417 5.26011 5.34980 5.44074 5.53801 5.64304 5.66279 5.72642 5.87215 5.89998 5.92473 6.03055 6.16784 6.20836 6.43868 6.45737 6.81222 6.89602 7.09855 7.47830 7.65918 8.34565 8.93197 10.03034 10.47502 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014473 B = 0.003057 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.116705 B = 9156.576029 C =10937.943506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.108 3.892 3 C -0.205 4.205 4 C 0.094 3.906 5 N -0.255 5.255 6 N -0.296 5.296 7 C 0.141 3.859 8 C -0.096 4.096 9 C -0.104 4.104 10 C -0.086 4.086 11 C -0.115 4.115 12 C -0.104 4.104 13 C -0.118 4.118 14 C 0.085 3.915 15 S 0.202 5.798 16 C -0.538 4.538 17 H 0.115 0.885 18 C 0.076 3.924 19 N -0.864 5.864 20 Si 0.935 3.065 21 H -0.267 1.267 22 H -0.282 1.282 23 H -0.267 1.267 24 N -0.289 5.289 25 N -0.267 5.267 26 C 0.091 3.909 27 C -0.086 4.086 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.278 0.722 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.820 -13.592 0.072 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.025 4.025 3 C -0.221 4.221 4 C -0.075 4.075 5 N -0.078 5.078 6 N -0.070 5.070 7 C 0.050 3.950 8 C -0.116 4.116 9 C -0.122 4.122 10 C -0.086 4.086 11 C -0.171 4.171 12 C -0.123 4.123 13 C -0.138 4.138 14 C -0.184 4.184 15 S 0.451 5.549 16 C -0.687 4.687 17 H 0.133 0.867 18 C -0.135 4.135 19 N -0.498 5.498 20 Si 0.760 3.240 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.191 1.191 24 N -0.131 5.131 25 N -0.097 5.097 26 C -0.082 4.082 27 C -0.145 4.145 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.527 -14.333 0.068 23.424 hybrid contribution -0.812 1.283 -0.021 1.519 sum -19.339 -13.050 0.047 23.330 Atomic orbital electron populations 1.20696 0.86389 1.04320 1.03750 1.20858 0.94187 0.85689 1.01812 1.19732 0.92075 0.94827 1.15502 1.22575 0.94732 0.91216 0.98983 1.77559 0.92100 1.11778 1.26327 1.45749 1.04365 1.03578 1.53325 1.17460 0.97161 0.81245 0.99131 1.21139 1.00003 0.92636 0.97828 1.20975 0.96499 0.95365 0.99370 1.20052 0.95865 0.96390 0.96328 1.20810 1.01407 0.92054 1.02868 1.20860 1.00420 0.91695 0.99300 1.21093 0.97236 0.97294 0.98185 1.26546 1.01240 0.90215 1.00444 1.83566 0.84528 1.12377 1.74467 1.23688 0.94249 0.94255 1.56518 0.86730 1.25243 0.96059 0.99331 0.92882 1.69938 1.06533 1.28937 1.44346 0.85926 0.77187 0.81098 0.79813 1.19153 1.20694 1.19142 1.72916 1.08647 1.11234 1.20305 1.71406 0.94556 1.33053 1.10681 1.21721 0.96768 0.87189 1.02535 1.20506 0.90696 1.01118 1.02130 0.89583 0.90582 0.88831 0.84579 0.84952 0.90852 0.91289 0.91342 0.84980 0.84980 0.91167 0.91221 0.90739 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 7.55 36.01 0.27 -0.60 16 2 C 0.11 1.65 6.78 -81.60 -0.55 1.10 16 3 C -0.21 -3.95 6.17 -105.11 -0.65 -4.60 16 4 C 0.09 2.13 7.63 -81.03 -0.62 1.51 16 5 N -0.26 -5.31 12.32 34.35 0.42 -4.89 16 6 N -0.30 -4.89 3.66 -6.60 -0.02 -4.92 16 7 C 0.14 1.86 5.99 -83.62 -0.50 1.36 16 8 C -0.10 -1.17 9.82 -39.39 -0.39 -1.56 16 9 C -0.10 -0.96 9.69 -39.61 -0.38 -1.34 16 10 C -0.09 -0.68 5.88 -104.58 -0.62 -1.30 16 11 C -0.11 -0.59 10.01 36.01 0.36 -0.23 16 12 C -0.10 -0.83 9.69 -39.61 -0.38 -1.21 16 13 C -0.12 -1.18 8.19 -39.40 -0.32 -1.50 16 14 C 0.08 2.15 7.29 -14.15 -0.10 2.05 16 15 S 0.20 5.37 21.73 -107.50 -2.34 3.03 16 16 C -0.54 -15.26 9.28 30.92 0.29 -14.97 16 17 H 0.11 3.32 6.61 -52.49 -0.35 2.97 16 18 C 0.08 2.07 5.49 -17.47 -0.10 1.97 16 19 N -0.86 -24.16 13.22 55.49 0.73 -23.42 16 20 Si 0.94 21.23 29.55 -169.99 -5.02 16.20 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 N -0.29 -7.52 9.59 32.89 0.32 -7.20 16 25 N -0.27 -6.20 11.21 33.94 0.38 -5.82 16 26 C 0.09 1.74 6.95 -81.85 -0.57 1.17 16 27 C -0.09 -1.12 9.42 36.00 0.34 -0.78 16 28 H 0.09 0.63 8.02 -51.93 -0.42 0.21 16 29 H 0.08 0.60 6.78 -51.93 -0.35 0.25 16 30 H 0.09 0.76 6.67 -51.93 -0.35 0.41 16 31 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 32 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 35 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.13 1.14 6.84 -52.49 -0.36 0.78 16 38 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.68 6.09 -51.93 -0.32 0.36 16 LS Contribution 362.53 15.07 5.46 5.46 Total: -1.00 -34.19 362.53 -8.64 -42.83 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -4.65 Total: -2.35 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -3.92 Total: -18.94 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 1.83 Total: -46.25 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 5.37 SS G_CDS: -2.34 Total: 3.03 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.19 -8.64 -42.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036646297.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.565 kcal (2) G-P(sol) polarization free energy of solvation -34.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds