Wall clock time and date at job start Tue Mar 31 2020 06:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86801 * 119.99899 * 2 1 4 4 H 1.48495 * 109.47338 * 270.00432 * 3 2 1 5 5 H 1.48491 * 109.47018 * 30.00665 * 3 2 1 6 6 H 1.48507 * 109.46898 * 150.00530 * 3 2 1 7 7 C 1.38795 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99829 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00300 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00170 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99634 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99873 * 180.02562 * 11 10 9 14 14 C 1.46495 * 119.99812 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47257 * 34.99524 * 14 13 11 16 16 C 1.53004 * 109.47490 * 154.99556 * 14 13 11 17 17 C 1.50702 * 109.46774 * 295.00155 * 16 14 13 18 18 C 1.38234 * 120.00257 * 90.00005 * 17 16 14 19 19 C 1.38238 * 119.99675 * 180.25732 * 18 17 16 20 20 C 1.38228 * 120.00110 * 359.52133 * 19 18 17 21 21 C 1.38234 * 120.00090 * 0.43562 * 20 19 18 22 22 C 1.38235 * 119.99522 * 269.97018 * 17 16 14 23 23 C 1.50707 * 109.46980 * 274.99392 * 14 13 11 24 24 C 1.38234 * 119.99616 * 319.72819 * 23 14 13 25 25 C 1.38237 * 119.99644 * 179.78600 * 24 23 14 26 26 C 1.38237 * 119.99850 * 0.43998 * 25 24 23 27 27 C 1.38239 * 119.99980 * 359.81409 * 26 25 24 28 28 C 1.38233 * 119.99656 * 139.99808 * 23 14 13 29 29 H 0.97002 * 120.00061 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.47100 * 60.00205 * 10 9 7 31 31 H 1.08998 * 109.47446 * 300.00363 * 10 9 7 32 32 H 0.96997 * 119.99807 * 359.97438 * 13 11 10 33 33 H 1.08993 * 109.47638 * 174.99676 * 16 14 13 34 34 H 1.08998 * 109.46675 * 54.99471 * 16 14 13 35 35 H 1.08002 * 119.99744 * 359.97115 * 18 17 16 36 36 H 1.08004 * 119.99577 * 179.72816 * 19 18 17 37 37 H 1.07998 * 119.99898 * 180.21654 * 20 19 18 38 38 H 1.08001 * 120.00324 * 179.78918 * 21 20 19 39 39 H 1.07996 * 120.00471 * 0.02562 * 22 17 16 40 40 H 1.08000 * 120.00220 * 359.97438 * 24 23 14 41 41 H 1.07999 * 120.00012 * 180.27573 * 25 24 23 42 42 H 1.08004 * 120.00053 * 179.83236 * 26 25 24 43 43 H 1.08004 * 119.99745 * 179.97438 * 27 26 25 44 44 H 1.07994 * 120.00578 * 359.97438 * 28 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5480 1.4401 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 -0.0012 12 8 0.7910 -5.5023 -0.0011 13 7 2.8441 -6.3432 -0.0008 14 6 2.3303 -7.7151 -0.0019 15 1 1.4151 -7.7598 -0.5923 16 6 3.3764 -8.6510 -0.6110 17 6 3.5798 -8.3001 -2.0624 18 6 4.5387 -7.3714 -2.4213 19 6 4.7216 -7.0458 -3.7522 20 6 3.9524 -7.6561 -4.7251 21 6 2.9940 -8.5854 -4.3664 22 6 2.8078 -8.9076 -3.0350 23 6 2.0369 -8.1428 1.4130 24 6 2.9011 -7.7937 2.4339 25 6 2.6296 -8.1822 3.7324 26 6 1.4986 -8.9276 4.0087 27 6 0.6372 -9.2812 2.9870 28 6 0.9064 -8.8889 1.6891 29 1 -0.4850 0.8401 0.0004 30 1 3.1244 -3.7314 0.8895 31 1 3.1245 -3.7314 -0.8905 32 1 3.8008 -6.1835 -0.0004 33 1 3.0320 -9.6820 -0.5312 34 1 4.3189 -8.5402 -0.0749 35 1 5.1419 -6.8969 -1.6613 36 1 5.4678 -6.3169 -4.0322 37 1 4.0976 -7.4042 -5.7652 38 1 2.3906 -9.0598 -5.1262 39 1 2.0586 -9.6332 -2.7547 40 1 3.7867 -7.2148 2.2174 41 1 3.3024 -7.9056 4.5307 42 1 1.2879 -9.2335 5.0229 43 1 -0.2462 -9.8639 3.2028 44 1 0.2333 -9.1650 0.8910 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036760448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:28 Heat of formation + Delta-G solvation = 4.787169 kcal Electronic energy + Delta-G solvation = -26073.720100 eV Core-core repulsion = 22467.475462 eV Total energy + Delta-G solvation = -3606.244637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.119 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.27034 -39.09547 -38.52485 -35.62383 -32.51378 -32.40426 -31.43664 -30.98018 -30.87805 -29.13784 -27.69049 -25.47145 -24.12872 -22.80541 -22.55953 -21.54997 -20.89011 -20.09702 -17.85520 -17.17591 -16.84341 -16.37251 -16.02914 -15.61457 -15.13591 -15.08928 -14.79173 -14.64397 -14.58089 -13.87040 -13.73889 -13.54749 -13.45700 -13.34138 -13.02008 -12.81146 -12.66054 -12.60367 -12.20400 -11.96714 -11.65208 -11.42101 -11.12231 -11.05587 -11.01079 -11.00615 -10.94462 -10.74826 -9.79784 -9.37710 -9.09684 -9.04408 -9.00142 -8.92450 -8.80464 -8.62341 -8.20443 -6.47030 -6.19820 -3.89829 1.18528 1.30317 1.36606 1.40121 3.05908 3.15666 3.23186 3.28836 3.33011 3.63590 3.69517 3.86565 4.22203 4.44112 4.67108 4.84558 4.85690 4.90785 4.92919 5.01065 5.03256 5.08880 5.10425 5.15309 5.22021 5.38208 5.40111 5.47982 5.53248 5.56697 5.67070 5.81658 5.89704 5.91797 5.92941 5.96418 6.03826 6.16269 6.34944 6.41302 6.43697 6.46057 6.48071 6.50405 6.74731 6.89477 6.97885 7.61084 7.73844 8.36879 8.67459 9.25470 10.87625 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008105 B = 0.003556 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3453.893719 B = 7873.065949 C =10444.362216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.152 4.152 11 C 0.535 3.465 12 O -0.513 6.513 13 N -0.729 5.729 14 C 0.194 3.806 15 H 0.097 0.903 16 C -0.082 4.082 17 C -0.080 4.080 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.090 4.090 24 C -0.103 4.103 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.121 4.121 28 C -0.104 4.104 29 H 0.268 0.732 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.395 0.605 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.124 -22.193 -1.012 24.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.303 4.303 11 C 0.322 3.678 12 O -0.386 6.386 13 N -0.383 5.383 14 C 0.088 3.912 15 H 0.115 0.885 16 C -0.120 4.120 17 C -0.080 4.080 18 C -0.129 4.129 19 C -0.134 4.134 20 C -0.142 4.142 21 C -0.136 4.136 22 C -0.134 4.134 23 C -0.092 4.092 24 C -0.121 4.121 25 C -0.140 4.140 26 C -0.141 4.141 27 C -0.139 4.139 28 C -0.122 4.122 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.229 0.771 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.945 -22.405 -1.021 23.794 hybrid contribution 2.366 1.515 0.032 2.809 sum 10.310 -20.890 -0.990 23.317 Atomic orbital electron populations 1.70021 1.05947 1.27403 1.46940 1.24979 0.95002 0.98972 0.94571 0.86186 0.79429 0.81656 0.78340 1.20278 1.20755 1.19704 1.22868 0.94884 0.91730 1.58847 0.91001 1.85406 1.04906 0.96216 1.96686 1.23519 1.06539 0.95504 1.04721 1.20261 0.86569 0.86167 0.74847 1.90698 1.15318 1.85463 1.47131 1.46021 1.09666 1.04802 1.77801 1.19705 0.97984 0.81422 0.92041 0.88457 1.20889 0.99548 0.99760 0.91771 1.19752 0.96321 0.97050 0.94852 1.21000 0.98251 0.97427 0.96239 1.21152 0.99668 0.99494 0.93089 1.21150 0.96430 0.97124 0.99464 1.21130 0.98179 0.98134 0.96167 1.21032 0.99224 1.00296 0.92820 1.20215 0.95285 0.98005 0.95660 1.20905 0.99372 0.99270 0.92577 1.21115 0.97726 0.98575 0.96548 1.21130 0.95050 0.98880 0.99024 1.21106 0.99372 1.00459 0.92922 1.20996 0.96376 0.97923 0.96923 0.92215 0.89409 0.89364 0.77073 0.89328 0.90226 0.86326 0.86069 0.86252 0.86188 0.86142 0.86396 0.86245 0.86344 0.86168 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.40 13.22 55.49 0.73 -25.66 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 11 C 0.54 10.08 7.80 -10.98 -0.09 9.99 16 12 O -0.51 -11.79 15.53 5.56 0.09 -11.70 16 13 N -0.73 -9.71 3.78 -54.93 -0.21 -9.91 16 14 C 0.19 2.31 2.16 -69.08 -0.15 2.16 16 15 H 0.10 1.38 7.44 -51.93 -0.39 0.99 16 16 C -0.08 -0.72 4.87 -27.88 -0.14 -0.86 16 17 C -0.08 -0.80 4.95 -104.62 -0.52 -1.32 16 18 C -0.11 -1.12 9.10 -39.58 -0.36 -1.48 16 19 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 20 C -0.12 -1.25 10.05 -39.59 -0.40 -1.64 16 21 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 22 C -0.12 -1.17 9.70 -39.58 -0.38 -1.56 16 23 C -0.09 -1.11 4.91 -104.62 -0.51 -1.62 16 24 C -0.10 -1.21 9.32 -39.58 -0.37 -1.57 16 25 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 26 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 27 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 28 C -0.10 -1.25 9.67 -39.58 -0.38 -1.63 16 29 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 31 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 32 H 0.40 4.14 7.82 -40.82 -0.32 3.82 16 33 H 0.09 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 35 H 0.12 0.98 7.57 -52.49 -0.40 0.58 16 36 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.12 1.21 7.73 -52.49 -0.41 0.81 16 41 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 43 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 44 H 0.12 1.31 8.04 -52.49 -0.42 0.89 16 LS Contribution 391.46 15.07 5.90 5.90 Total: -1.00 -35.66 391.46 -11.71 -47.37 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.12 Total: 5.13 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -4.86 Total: -23.81 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.53 Total: -35.58 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.66 -11.71 -47.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036760448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.156 kcal (2) G-P(sol) polarization free energy of solvation -35.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds