Wall clock time and date at job start Tue Mar 31 2020 06:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86794 * 119.99759 * 2 1 4 4 H 1.48503 * 109.46948 * 269.99733 * 3 2 1 5 5 H 1.48500 * 109.47510 * 29.99649 * 3 2 1 6 6 H 1.48504 * 109.47120 * 149.99997 * 3 2 1 7 7 C 1.38795 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00300 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00105 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00060 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47234 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99956 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00025 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99922 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.47500 * 325.00346 * 14 13 11 16 16 C 1.53001 * 109.47344 * 204.99537 * 14 13 11 17 17 C 1.50706 * 109.46589 * 65.00066 * 16 14 13 18 18 C 1.38237 * 119.99744 * 90.00605 * 17 16 14 19 19 C 1.38235 * 119.99712 * 180.02562 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.94731 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00223 * 270.01815 * 17 16 14 23 23 C 1.50706 * 109.46849 * 84.99908 * 14 13 11 24 24 C 1.38227 * 120.00187 * 39.72600 * 23 14 13 25 25 C 1.38234 * 120.00030 * 179.80860 * 24 23 14 26 26 C 1.38229 * 119.99944 * 0.39615 * 25 24 23 27 27 C 1.38237 * 120.00245 * 359.86197 * 26 25 24 28 28 C 1.38237 * 119.99601 * 219.99826 * 23 14 13 29 29 H 0.96991 * 120.00019 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47365 * 59.99804 * 10 9 7 31 31 H 1.08998 * 109.46879 * 300.00075 * 10 9 7 32 32 H 0.96996 * 120.00154 * 359.97438 * 13 11 10 33 33 H 1.08998 * 109.47218 * 305.00812 * 16 14 13 34 34 H 1.08993 * 109.47154 * 185.00246 * 16 14 13 35 35 H 1.08005 * 120.00088 * 359.97438 * 18 17 16 36 36 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 37 37 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 38 38 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 39 39 H 1.07998 * 119.99975 * 0.02562 * 22 17 16 40 40 H 1.08005 * 119.99732 * 359.97438 * 24 23 14 41 41 H 1.08001 * 119.99757 * 180.23015 * 25 24 23 42 42 H 1.08006 * 119.99944 * 179.83311 * 26 25 24 43 43 H 1.07999 * 120.00266 * 179.97438 * 27 26 25 44 44 H 1.08000 * 120.00478 * 359.97438 * 28 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0003 14 6 2.3305 -7.7151 0.0003 15 1 1.4145 -7.7601 0.5893 16 6 3.3758 -8.6511 0.6102 17 6 3.5773 -8.3009 2.0621 18 6 2.8037 -8.9084 3.0334 19 6 2.9882 -8.5868 4.3651 20 6 3.9469 -7.6584 4.7256 21 6 4.7172 -7.0474 3.7539 22 6 4.5355 -7.3720 2.4225 23 6 2.0389 -8.1422 -1.4153 24 6 2.8984 -7.7830 -2.4366 25 6 2.6330 -8.1782 -3.7344 26 6 1.5037 -8.9254 -4.0121 27 6 0.6413 -9.2801 -2.9915 28 6 0.9089 -8.8883 -1.6931 29 1 -0.4850 0.8400 -0.0004 30 1 3.1246 -3.7314 0.8905 31 1 3.1245 -3.7313 -0.8894 32 1 3.8010 -6.1835 0.0006 33 1 4.3191 -8.5402 0.0755 34 1 3.0315 -9.6821 0.5295 35 1 2.0547 -9.6337 2.7518 36 1 2.3836 -9.0611 5.1240 37 1 4.0913 -7.4075 5.7661 38 1 5.4632 -6.3188 4.0351 39 1 5.1394 -6.8969 1.6636 40 1 3.7787 -7.1960 -2.2201 41 1 3.3065 -7.9007 -4.5317 42 1 1.2949 -9.2319 -5.0265 43 1 -0.2412 -9.8636 -3.2086 44 1 0.2352 -9.1655 -0.8958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036760449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:31 Heat of formation + Delta-G solvation = -14.415393 kcal Electronic energy + Delta-G solvation = -26075.431399 eV Core-core repulsion = 22468.354077 eV Total energy + Delta-G solvation = -3607.077323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.119 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.32280 -39.92866 -39.69969 -36.70550 -34.58221 -33.61422 -32.35409 -31.74938 -31.71724 -30.53758 -28.64117 -27.64503 -25.01721 -23.63880 -23.36159 -22.45789 -21.88310 -21.29759 -19.83529 -18.12585 -17.84792 -17.57453 -17.19033 -16.87637 -16.56020 -16.11440 -16.08681 -15.81042 -15.77434 -15.30171 -14.78952 -14.60396 -14.43969 -14.24003 -14.23066 -14.07328 -13.70718 -13.46892 -13.40457 -13.16166 -13.06848 -12.89170 -12.59605 -12.52166 -12.21914 -11.87386 -11.81620 -11.78671 -11.71916 -11.13973 -10.92991 -10.26574 -10.22927 -9.78323 -9.77386 -9.71568 -9.46123 -8.65705 -8.34238 -6.12025 0.37444 0.53181 0.54110 0.54921 1.27555 1.42218 1.47384 1.57729 1.66099 2.26050 2.30569 2.84322 2.97573 2.99989 3.33535 3.61277 3.92359 3.97305 4.02900 4.05637 4.13769 4.20061 4.25078 4.29702 4.31052 4.32042 4.36723 4.49960 4.57277 4.66711 4.67829 4.75592 4.83059 4.97412 5.10118 5.17170 5.20132 5.20336 5.39576 5.41973 5.58731 5.60977 5.64551 5.66932 5.68971 5.78044 6.14113 6.16799 6.20086 6.51741 7.07073 7.28380 8.75069 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008105 B = 0.003556 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3454.024602 B = 7871.407449 C =10443.099041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.150 6.150 10 C -0.128 4.128 11 C 0.538 3.462 12 O -0.561 6.561 13 N -0.702 5.702 14 C 0.199 3.801 15 H 0.071 0.929 16 C -0.069 4.069 17 C -0.091 4.091 18 C -0.130 4.130 19 C -0.132 4.132 20 C -0.137 4.137 21 C -0.131 4.131 22 C -0.122 4.122 23 C -0.105 4.105 24 C -0.115 4.115 25 C -0.130 4.130 26 C -0.129 4.129 27 C -0.129 4.129 28 C -0.123 4.123 29 H 0.271 0.729 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.413 0.587 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.131 0.869 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.685 -22.507 0.365 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.077 5.923 10 C -0.279 4.279 11 C 0.324 3.676 12 O -0.439 6.439 13 N -0.355 5.355 14 C 0.095 3.905 15 H 0.090 0.910 16 C -0.107 4.107 17 C -0.091 4.091 18 C -0.148 4.148 19 C -0.150 4.150 20 C -0.155 4.155 21 C -0.149 4.149 22 C -0.140 4.140 23 C -0.106 4.106 24 C -0.133 4.133 25 C -0.148 4.148 26 C -0.147 4.147 27 C -0.147 4.147 28 C -0.142 4.142 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.250 0.750 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.149 0.851 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.156 0.844 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.563 -22.762 0.385 25.097 hybrid contribution 1.581 1.466 0.151 2.161 sum 12.143 -21.296 0.536 24.521 Atomic orbital electron populations 1.70187 1.08004 1.28571 1.48096 1.26110 0.95923 1.03267 0.93731 0.84972 0.78245 0.76070 0.78818 1.19279 1.20325 1.18128 1.23202 0.95320 0.92036 1.58793 0.89964 1.85598 1.10521 0.99163 1.97021 1.23352 1.03525 0.94554 1.06492 1.19997 0.86272 0.86538 0.74775 1.90690 1.17408 1.85972 1.49835 1.45743 1.09945 1.04416 1.75426 1.19731 0.98003 0.80668 0.92140 0.91046 1.20831 0.99402 0.99471 0.90954 1.19935 0.96484 0.97265 0.95379 1.21321 0.99595 1.00753 0.93159 1.21415 0.98500 0.98369 0.96673 1.21447 0.96460 0.97164 1.00407 1.21445 1.00128 0.99928 0.93403 1.21292 0.98477 0.97457 0.96754 1.20263 0.95884 0.98716 0.95709 1.21132 0.99880 0.99518 0.92815 1.21445 0.98205 0.98258 0.96908 1.21479 0.94736 0.98412 1.00067 1.21402 1.00166 1.00483 0.92660 1.21211 0.96615 0.98647 0.97718 0.92030 0.87519 0.87407 0.74989 0.88180 0.87960 0.85087 0.84787 0.84891 0.84790 0.84532 0.85098 0.84265 0.84119 0.84393 0.85880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.51 13.22 21.65 0.29 -56.23 16 2 C 0.01 0.82 5.49 84.86 0.47 1.29 16 3 Si 1.00 43.76 29.55 68.60 2.03 45.78 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.55 -31.37 9.50 67.95 0.65 -30.72 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.44 20.57 -56.49 -1.16 -9.61 16 10 C -0.13 -5.13 6.16 71.23 0.44 -4.69 16 11 C 0.54 20.08 7.80 87.66 0.68 20.76 16 12 O -0.56 -26.50 15.52 -3.05 -0.05 -26.55 16 13 N -0.70 -17.68 3.76 -446.08 -1.68 -19.35 16 14 C 0.20 4.58 2.16 44.25 0.10 4.67 16 15 H 0.07 2.06 7.44 -2.39 -0.02 2.04 16 16 C -0.07 -1.09 4.87 29.85 0.15 -0.95 16 17 C -0.09 -1.70 4.95 -19.86 -0.10 -1.80 16 18 C -0.13 -2.55 9.70 22.27 0.22 -2.33 16 19 C -0.13 -2.55 10.05 22.27 0.22 -2.32 16 20 C -0.14 -2.64 10.05 22.27 0.22 -2.42 16 21 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 22 C -0.12 -2.24 9.10 22.27 0.20 -2.03 16 23 C -0.10 -2.47 4.91 -19.87 -0.10 -2.57 16 24 C -0.12 -2.50 9.33 22.27 0.21 -2.29 16 25 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 26 C -0.13 -2.54 10.05 22.27 0.22 -2.31 16 27 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 28 C -0.12 -2.93 9.67 22.27 0.22 -2.71 16 29 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 30 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 31 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 32 H 0.41 7.53 7.83 -92.71 -0.73 6.81 16 33 H 0.10 1.20 8.09 -2.39 -0.02 1.18 16 34 H 0.10 1.39 8.08 -2.39 -0.02 1.37 16 35 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.14 1.88 7.57 -2.91 -0.02 1.86 16 40 H 0.13 2.37 7.71 -2.91 -0.02 2.35 16 41 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 42 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 43 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 44 H 0.12 2.73 8.04 -2.91 -0.02 2.71 16 Total: -1.00 -79.46 391.43 4.17 -75.30 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.27 Total: 28.27 kcal Atomic # 6 Polarization: -42.08 SS G_CDS: 4.46 Total: -37.61 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -1.39 Total: -75.58 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.05 Total: -26.55 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.61 kcal Total: -79.46 4.17 -75.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036760449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.880 kcal (2) G-P(sol) polarization free energy of solvation -79.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds