Wall clock time and date at job start Tue Mar 31 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31544 * 1 3 3 Si 1.86801 * 120.00205 * 2 1 4 4 H 1.48502 * 109.47455 * 240.00605 * 3 2 1 5 5 H 1.48507 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47487 * 120.00042 * 3 2 1 7 7 C 1.38810 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00051 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99774 * 359.97438 * 7 2 1 10 10 C 1.76205 * 100.00026 * 185.65751 * 9 7 2 11 11 C 1.39114 * 120.18613 * 6.83836 * 10 9 7 12 12 C 1.37916 * 120.04752 * 180.25538 * 11 10 9 13 13 C 1.38662 * 120.43564 * 359.74748 * 12 11 10 14 14 C 1.37806 * 120.38376 * 0.02562 * 13 12 11 15 15 C 1.39675 * 119.93568 * 359.97438 * 14 13 12 16 16 C 1.47429 * 120.21307 * 179.97438 * 15 14 13 17 17 O 1.21608 * 120.00089 * 179.97438 * 16 15 14 18 18 N 1.34780 * 120.00247 * 0.02562 * 16 15 14 19 19 C 1.46492 * 120.00475 * 180.02562 * 18 16 15 20 20 H 1.09006 * 109.53379 * 34.63233 * 19 18 16 21 21 C 1.53873 * 109.64919 * 154.99751 * 19 18 16 22 22 C 1.55046 * 106.66675 * 167.01094 * 21 19 18 23 23 S 1.83330 * 102.54985 * 317.62205 * 22 21 19 24 24 O 1.42102 * 109.31729 * 269.76110 * 23 22 21 25 25 O 1.42091 * 109.37919 * 136.56645 * 23 22 21 26 26 C 1.54161 * 109.64700 * 274.27299 * 19 18 16 27 27 H 0.97005 * 120.00342 * 359.97438 * 1 2 3 28 28 H 1.07995 * 119.97949 * 0.02562 * 11 10 9 29 29 H 1.07992 * 119.78066 * 179.76435 * 12 11 10 30 30 H 1.07997 * 119.80585 * 179.97438 * 13 12 11 31 31 H 1.08001 * 120.03005 * 179.97438 * 14 13 12 32 32 H 0.97005 * 119.99281 * 359.97438 * 18 16 15 33 33 H 1.09000 * 110.02815 * 286.32246 * 21 19 18 34 34 H 1.08997 * 110.02654 * 47.69292 * 21 19 18 35 35 H 1.08998 * 110.79248 * 75.86031 * 22 21 19 36 36 H 1.09001 * 110.78984 * 199.32585 * 22 21 19 37 37 H 1.09007 * 110.32070 * 331.14299 * 26 19 18 38 38 H 1.09004 * 110.32116 * 93.33548 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1032 1.6965 -1.2126 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6964 1.2124 7 6 2.0095 -1.2021 -0.0005 8 1 3.0895 -1.2021 -0.0010 9 16 1.1285 -2.7280 -0.0005 10 6 2.4711 -3.8565 0.1698 11 6 3.7585 -3.3823 0.4002 12 6 4.8080 -4.2678 0.5278 13 6 4.5899 -5.6339 0.4332 14 6 3.3212 -6.1234 0.2099 15 6 2.2468 -5.2407 0.0782 16 6 0.8870 -5.7576 -0.1614 17 8 -0.0457 -4.9857 -0.2750 18 7 0.6775 -7.0859 -0.2535 19 6 -0.6735 -7.5996 -0.4921 20 1 -1.2160 -6.9112 -1.1402 21 6 -0.5905 -8.9829 -1.1608 22 6 -2.0095 -9.6022 -1.0791 23 16 -2.5327 -9.1760 0.6254 24 8 -2.1447 -10.2177 1.5106 25 8 -3.8803 -8.7258 0.6064 26 6 -1.4180 -7.7432 0.8501 27 1 -0.4851 0.8401 0.0004 28 1 3.9368 -2.3198 0.4755 29 1 5.8063 -3.8948 0.7028 30 1 5.4193 -6.3182 0.5342 31 1 3.1579 -7.1885 0.1367 32 1 1.4215 -7.7016 -0.1625 33 1 -0.2891 -8.8764 -2.2029 34 1 0.1227 -9.6125 -0.6287 35 1 -2.6737 -9.1456 -1.8129 36 1 -1.9682 -10.6832 -1.2129 37 1 -0.7106 -7.9367 1.6566 38 1 -1.9961 -6.8433 1.0606 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040467971.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:18 Heat of formation + Delta-G solvation = -72.087874 kcal Electronic energy + Delta-G solvation = -24460.647531 eV Core-core repulsion = 20714.847104 eV Total energy + Delta-G solvation = -3745.800427 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -39.86104 -37.89821 -37.26010 -36.62257 -36.18202 -33.09532 -32.81795 -30.78266 -30.36201 -29.40621 -25.89003 -25.55186 -23.36922 -22.12485 -21.43412 -20.32093 -19.06031 -18.35341 -17.41633 -17.10814 -16.85006 -15.96639 -15.93175 -15.57543 -15.20145 -14.81414 -14.59469 -14.30298 -14.17949 -13.90260 -13.81929 -13.18228 -13.02555 -12.79172 -12.64165 -12.45204 -12.36884 -12.22420 -12.00528 -11.66041 -11.53250 -11.27597 -11.22811 -11.05366 -10.98797 -10.67636 -10.39164 -9.92014 -9.76253 -9.57557 -9.09289 -8.80705 -8.43544 -8.17697 -6.62151 -6.52280 -4.23790 -0.22358 1.41885 1.93606 2.25094 3.05678 3.10085 3.13884 3.14818 3.29054 3.35706 3.41325 3.81023 4.00593 4.04410 4.21583 4.30421 4.45601 4.50990 4.70303 4.89115 5.03453 5.07095 5.19614 5.24296 5.27645 5.33021 5.52481 5.60166 5.70019 5.87029 6.02744 6.29877 6.45903 6.51912 6.75128 6.93512 7.05371 7.37723 7.51211 7.67602 8.09537 8.59622 8.93919 10.50923 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.015410 B = 0.003058 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.596056 B = 9155.460576 C =10574.497776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.084 3.916 3 Si 0.919 3.081 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.598 4.598 8 H 0.091 0.909 9 S 0.188 5.812 10 C -0.057 4.057 11 C -0.152 4.152 12 C -0.075 4.075 13 C -0.187 4.187 14 C -0.061 4.061 15 C -0.181 4.181 16 C 0.555 3.445 17 O -0.503 6.503 18 N -0.729 5.729 19 C 0.157 3.843 20 H 0.112 0.888 21 C -0.129 4.129 22 C -0.586 4.586 23 S 2.391 3.609 24 O -0.939 6.939 25 O -0.936 6.936 26 C -0.607 4.607 27 H 0.276 0.724 28 H 0.139 0.861 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.398 0.602 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.349 -18.168 -2.233 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.127 4.127 3 Si 0.745 3.255 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.745 4.745 8 H 0.109 0.891 9 S 0.453 5.547 10 C -0.177 4.177 11 C -0.177 4.177 12 C -0.098 4.098 13 C -0.211 4.211 14 C -0.081 4.081 15 C -0.196 4.196 16 C 0.344 3.656 17 O -0.380 6.380 18 N -0.385 5.385 19 C 0.050 3.950 20 H 0.130 0.870 21 C -0.168 4.168 22 C -0.716 4.716 23 S 2.573 3.427 24 O -0.936 6.936 25 O -0.933 6.933 26 C -0.738 4.738 27 H 0.086 0.914 28 H 0.157 0.843 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.234 0.766 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.160 0.840 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.689 -17.722 -1.839 17.831 hybrid contribution 3.004 1.242 -0.265 3.262 sum 2.315 -16.480 -2.103 16.774 Atomic orbital electron populations 1.69953 1.06255 1.28670 1.44027 1.25100 0.94977 0.99671 0.92942 0.86193 0.79490 0.80546 0.79310 1.19438 1.20502 1.19458 1.24016 0.96989 0.94022 1.59424 0.89137 1.84704 1.02275 0.92978 1.74726 1.23095 1.00813 0.96985 0.96818 1.21448 0.91706 1.00911 1.03676 1.21105 0.98170 0.93392 0.97090 1.20640 0.96349 0.95287 1.08845 1.20885 0.92596 0.97395 0.97184 1.19010 0.92273 0.92660 1.15704 1.18371 0.89156 0.81353 0.76693 1.90795 1.43565 1.55227 1.48393 1.45808 1.08413 1.07568 1.76666 1.21162 0.85553 0.95742 0.92537 0.86961 1.22461 0.94699 0.94635 1.04971 1.30584 1.06215 1.10807 1.23958 1.09023 0.76774 0.77977 0.78906 1.93620 1.84352 1.53955 1.61641 1.93628 1.31748 1.81604 1.86342 1.31078 1.15889 1.20149 1.06701 0.91369 0.84339 0.86959 0.87014 0.87135 0.76564 0.87591 0.88938 0.84034 0.84178 0.84008 0.83352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.17 13.22 55.49 0.73 -23.44 16 2 C 0.08 2.26 5.49 -17.46 -0.10 2.17 16 3 Si 0.92 20.22 29.55 -169.99 -5.02 15.20 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 7 C -0.60 -16.04 9.00 30.94 0.28 -15.76 16 8 H 0.09 2.29 4.98 -52.49 -0.26 2.03 16 9 S 0.19 4.85 18.56 -107.50 -2.00 2.86 16 10 C -0.06 -1.24 6.15 -38.39 -0.24 -1.47 16 11 C -0.15 -3.04 9.22 -39.37 -0.36 -3.40 16 12 C -0.08 -1.21 10.03 -39.54 -0.40 -1.61 16 13 C -0.19 -2.66 10.02 -39.58 -0.40 -3.06 16 14 C -0.06 -0.87 9.53 -39.20 -0.37 -1.24 16 15 C -0.18 -3.30 5.89 -104.76 -0.62 -3.92 16 16 C 0.55 9.58 7.73 -12.52 -0.10 9.48 16 17 O -0.50 -10.70 13.43 5.27 0.07 -10.63 16 18 N -0.73 -8.41 5.00 -53.85 -0.27 -8.68 16 19 C 0.16 1.49 2.88 -66.87 -0.19 1.30 16 20 H 0.11 1.20 7.57 -51.93 -0.39 0.81 16 21 C -0.13 -0.72 5.97 -25.20 -0.15 -0.87 16 22 C -0.59 -3.00 7.31 38.24 0.28 -2.72 16 23 S 2.39 20.74 6.11 -107.50 -0.66 20.08 16 24 O -0.94 -11.00 18.14 -57.71 -1.05 -12.05 16 25 O -0.94 -11.92 18.15 -57.71 -1.05 -12.97 16 26 C -0.61 -5.69 6.91 37.76 0.26 -5.43 16 27 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.14 2.90 5.04 -52.49 -0.26 2.63 16 29 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 30 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 31 H 0.11 1.11 6.40 -52.49 -0.34 0.77 16 32 H 0.40 3.34 6.62 -40.82 -0.27 3.07 16 33 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.36 8.12 -51.93 -0.42 -0.06 16 35 H 0.14 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.14 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.14 1.23 8.07 -51.92 -0.42 0.81 16 38 H 0.15 1.58 8.14 -51.93 -0.42 1.15 16 LS Contribution 343.41 15.07 5.18 5.18 Total: -1.00 -36.94 343.41 -10.20 -47.14 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.04 Total: 3.85 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: -2.10 Total: -26.54 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.46 Total: -32.12 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -2.02 Total: -35.64 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 25.59 SS G_CDS: -2.65 Total: 22.94 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.94 -10.20 -47.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040467971.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.949 kcal (2) G-P(sol) polarization free energy of solvation -36.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds