Wall clock time and date at job start Tue Mar 31 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31544 * 1 3 3 Si 1.86801 * 120.00205 * 2 1 4 4 H 1.48502 * 109.47455 * 240.00605 * 3 2 1 5 5 H 1.48507 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47487 * 120.00042 * 3 2 1 7 7 C 1.38810 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00051 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99774 * 359.97438 * 7 2 1 10 10 C 1.76205 * 100.00026 * 185.65751 * 9 7 2 11 11 C 1.39114 * 120.18613 * 6.83836 * 10 9 7 12 12 C 1.37916 * 120.04752 * 180.25538 * 11 10 9 13 13 C 1.38662 * 120.43564 * 359.74748 * 12 11 10 14 14 C 1.37806 * 120.38376 * 0.02562 * 13 12 11 15 15 C 1.39675 * 119.93568 * 359.97438 * 14 13 12 16 16 C 1.47429 * 120.21307 * 179.97438 * 15 14 13 17 17 O 1.21608 * 120.00089 * 179.97438 * 16 15 14 18 18 N 1.34780 * 120.00247 * 0.02562 * 16 15 14 19 19 C 1.46492 * 120.00475 * 180.02562 * 18 16 15 20 20 H 1.09006 * 109.53379 * 34.63233 * 19 18 16 21 21 C 1.53873 * 109.64919 * 154.99751 * 19 18 16 22 22 C 1.55046 * 106.66675 * 167.01094 * 21 19 18 23 23 S 1.83330 * 102.54985 * 317.62205 * 22 21 19 24 24 O 1.42102 * 109.31729 * 269.76110 * 23 22 21 25 25 O 1.42091 * 109.37919 * 136.56645 * 23 22 21 26 26 C 1.54161 * 109.64700 * 274.27299 * 19 18 16 27 27 H 0.97005 * 120.00342 * 359.97438 * 1 2 3 28 28 H 1.07995 * 119.97949 * 0.02562 * 11 10 9 29 29 H 1.07992 * 119.78066 * 179.76435 * 12 11 10 30 30 H 1.07997 * 119.80585 * 179.97438 * 13 12 11 31 31 H 1.08001 * 120.03005 * 179.97438 * 14 13 12 32 32 H 0.97005 * 119.99281 * 359.97438 * 18 16 15 33 33 H 1.09000 * 110.02815 * 286.32246 * 21 19 18 34 34 H 1.08997 * 110.02654 * 47.69292 * 21 19 18 35 35 H 1.08998 * 110.79248 * 75.86031 * 22 21 19 36 36 H 1.09001 * 110.78984 * 199.32585 * 22 21 19 37 37 H 1.09007 * 110.32070 * 331.14299 * 26 19 18 38 38 H 1.09004 * 110.32116 * 93.33548 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1032 1.6965 -1.2126 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6964 1.2124 7 6 2.0095 -1.2021 -0.0005 8 1 3.0895 -1.2021 -0.0010 9 16 1.1285 -2.7280 -0.0005 10 6 2.4711 -3.8565 0.1698 11 6 3.7585 -3.3823 0.4002 12 6 4.8080 -4.2678 0.5278 13 6 4.5899 -5.6339 0.4332 14 6 3.3212 -6.1234 0.2099 15 6 2.2468 -5.2407 0.0782 16 6 0.8870 -5.7576 -0.1614 17 8 -0.0457 -4.9857 -0.2750 18 7 0.6775 -7.0859 -0.2535 19 6 -0.6735 -7.5996 -0.4921 20 1 -1.2160 -6.9112 -1.1402 21 6 -0.5905 -8.9829 -1.1608 22 6 -2.0095 -9.6022 -1.0791 23 16 -2.5327 -9.1760 0.6254 24 8 -2.1447 -10.2177 1.5106 25 8 -3.8803 -8.7258 0.6064 26 6 -1.4180 -7.7432 0.8501 27 1 -0.4851 0.8401 0.0004 28 1 3.9368 -2.3198 0.4755 29 1 5.8063 -3.8948 0.7028 30 1 5.4193 -6.3182 0.5342 31 1 3.1579 -7.1885 0.1367 32 1 1.4215 -7.7016 -0.1625 33 1 -0.2891 -8.8764 -2.2029 34 1 0.1227 -9.6125 -0.6287 35 1 -2.6737 -9.1456 -1.8129 36 1 -1.9682 -10.6832 -1.2129 37 1 -0.7106 -7.9367 1.6566 38 1 -1.9961 -6.8433 1.0606 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040467971.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:17 Heat of formation + Delta-G solvation = -101.711987 kcal Electronic energy + Delta-G solvation = -24461.932129 eV Core-core repulsion = 20714.847104 eV Total energy + Delta-G solvation = -3747.085025 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13058 -39.15791 -38.11644 -37.65133 -37.04082 -34.77342 -34.14993 -31.97081 -31.76977 -30.26320 -27.84254 -26.36768 -24.52838 -23.44146 -22.31786 -21.62780 -19.98938 -19.77081 -18.82061 -17.94469 -17.72063 -17.32127 -17.03511 -16.83091 -16.55740 -15.90462 -15.86205 -15.56777 -15.29201 -15.02978 -14.83490 -14.70119 -14.43902 -13.65453 -13.53381 -13.31124 -13.26268 -13.21053 -13.12470 -13.00036 -12.97773 -12.89646 -12.55570 -12.17042 -12.07406 -11.81192 -11.49395 -11.40040 -11.34524 -11.24135 -10.40991 -10.21963 -9.92603 -9.77349 -8.47116 -8.45774 -6.24927 -0.92858 0.03981 0.55377 1.26142 1.36987 1.43194 1.56391 1.64637 2.00361 2.12965 2.24820 2.66030 2.87310 3.04549 3.08743 3.23850 3.39446 3.61538 3.67809 3.95885 3.97245 4.04136 4.09527 4.28162 4.54780 4.62792 4.66475 4.69983 4.83776 4.86729 4.98489 5.04918 5.12534 5.36280 5.43662 5.47152 5.58103 5.69187 6.09728 6.16789 6.61580 6.95426 7.35415 8.59103 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.015410 B = 0.003058 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.596056 B = 9155.460576 C =10574.497776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.026 3.974 3 Si 0.991 3.009 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.604 4.604 8 H 0.094 0.906 9 S 0.066 5.934 10 C -0.074 4.074 11 C -0.177 4.177 12 C -0.071 4.071 13 C -0.158 4.158 14 C -0.052 4.052 15 C -0.183 4.183 16 C 0.549 3.451 17 O -0.551 6.551 18 N -0.703 5.703 19 C 0.147 3.853 20 H 0.093 0.907 21 C -0.122 4.122 22 C -0.551 4.551 23 S 2.401 3.599 24 O -0.969 6.969 25 O -0.986 6.986 26 C -0.613 4.613 27 H 0.276 0.724 28 H 0.116 0.884 29 H 0.147 0.853 30 H 0.166 0.834 31 H 0.168 0.832 32 H 0.419 0.581 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.158 0.842 36 H 0.176 0.824 37 H 0.148 0.852 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.178 -22.485 -3.175 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.180 4.180 3 Si 0.812 3.188 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.751 4.751 8 H 0.112 0.888 9 S 0.325 5.675 10 C -0.192 4.192 11 C -0.202 4.202 12 C -0.092 4.092 13 C -0.181 4.181 14 C -0.071 4.071 15 C -0.197 4.197 16 C 0.338 3.662 17 O -0.430 6.430 18 N -0.358 5.358 19 C 0.040 3.960 20 H 0.112 0.888 21 C -0.160 4.160 22 C -0.684 4.684 23 S 2.587 3.413 24 O -0.966 6.966 25 O -0.983 6.983 26 C -0.743 4.743 27 H 0.085 0.915 28 H 0.134 0.866 29 H 0.164 0.836 30 H 0.184 0.816 31 H 0.186 0.814 32 H 0.258 0.742 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.176 0.824 36 H 0.193 0.807 37 H 0.166 0.834 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.216 -22.159 -2.729 22.557 hybrid contribution 2.051 2.130 0.014 2.957 sum 5.267 -20.029 -2.715 20.887 Atomic orbital electron populations 1.70112 1.08004 1.29240 1.46581 1.26120 0.95822 1.03378 0.92706 0.85113 0.78136 0.75862 0.79668 1.18568 1.19941 1.18544 1.24225 0.97059 0.94531 1.59277 0.88848 1.84865 1.06443 0.95361 1.80851 1.23012 0.99616 0.97528 0.99023 1.21442 0.92396 1.00867 1.05536 1.21544 0.98402 0.94043 0.95174 1.21343 0.97735 0.94988 1.04034 1.21499 0.91240 0.99582 0.94804 1.19482 0.94298 0.91899 1.13990 1.18493 0.88422 0.82986 0.76346 1.90803 1.44826 1.57008 1.50393 1.45528 1.10167 1.05683 1.74410 1.21440 0.84003 0.98071 0.92485 0.88849 1.22551 0.95442 0.91876 1.06166 1.30424 1.05922 1.13128 1.18958 1.08593 0.75337 0.76665 0.80668 1.93572 1.84388 1.54221 1.64392 1.93562 1.34725 1.82234 1.87779 1.31041 1.16209 1.19875 1.07197 0.91523 0.86618 0.83558 0.81646 0.81445 0.74170 0.85274 0.85854 0.82407 0.80678 0.83369 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.10 13.22 21.65 0.29 -54.81 16 2 C 0.03 1.45 5.49 84.87 0.47 1.92 16 3 Si 0.99 43.60 29.55 68.60 2.03 45.63 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 7 C -0.60 -34.92 9.00 67.96 0.61 -34.31 16 8 H 0.09 5.08 4.98 -2.91 -0.01 5.07 16 9 S 0.07 3.72 18.56 -56.49 -1.05 2.67 16 10 C -0.07 -3.31 6.15 23.04 0.14 -3.17 16 11 C -0.18 -7.11 9.22 22.40 0.21 -6.91 16 12 C -0.07 -2.01 10.03 22.29 0.22 -1.79 16 13 C -0.16 -3.47 10.02 22.27 0.22 -3.25 16 14 C -0.05 -1.20 9.53 22.51 0.21 -0.98 16 15 C -0.18 -6.45 5.89 -19.95 -0.12 -6.57 16 16 C 0.55 18.91 7.73 86.66 0.67 19.58 16 17 O -0.55 -25.07 13.43 -4.06 -0.05 -25.12 16 18 N -0.70 -14.35 5.00 -442.53 -2.21 -16.56 16 19 C 0.15 2.52 2.88 45.68 0.13 2.65 16 20 H 0.09 2.01 7.57 -2.38 -0.02 2.00 16 21 C -0.12 -0.75 5.97 31.59 0.19 -0.56 16 22 C -0.55 -3.29 7.31 72.68 0.53 -2.76 16 23 S 2.40 39.58 6.11 -56.49 -0.34 39.24 16 24 O -0.97 -21.47 18.14 -127.49 -2.31 -23.78 16 25 O -0.99 -25.97 18.15 -127.49 -2.31 -28.28 16 26 C -0.61 -11.54 6.91 72.38 0.50 -11.04 16 27 H 0.28 15.56 8.31 -92.70 -0.77 14.79 16 28 H 0.12 5.10 5.04 -2.91 -0.01 5.09 16 29 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 30 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.17 1.99 6.40 -2.91 -0.02 1.98 16 32 H 0.42 4.78 6.62 -92.70 -0.61 4.17 16 33 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.12 0.12 8.12 -2.39 -0.02 0.10 16 35 H 0.16 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.18 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.15 2.50 8.07 -2.38 -0.02 2.48 16 38 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -93.22 343.41 -1.48 -94.70 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.51 Total: 13.50 kcal Atomic # 6 Polarization: -51.16 SS G_CDS: 3.99 Total: -47.17 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -1.93 Total: -71.37 kcal Atomic # 8 Polarization: -72.51 SS G_CDS: -4.68 Total: -77.19 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 43.30 SS G_CDS: -1.39 Total: 41.91 kcal Total: -93.22 -1.48 -94.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040467971.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.016 kcal (2) G-P(sol) polarization free energy of solvation -93.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds