Wall clock time and date at job start Tue Mar 31 2020 05:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39645 * 120.14904 * 156.32869 * 3 2 1 5 5 C 1.37925 * 119.84533 * 180.02562 * 4 3 2 6 6 C 1.38383 * 120.15197 * 359.97438 * 5 4 3 7 7 C 1.38335 * 120.30711 * 359.97438 * 6 5 4 8 8 C 1.37973 * 120.15122 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.07805 * 180.02562 * 8 7 6 10 10 S 1.81401 * 109.46983 * 269.97991 * 9 8 7 11 11 O 1.42100 * 110.54183 * 291.62330 * 10 9 8 12 12 O 1.42096 * 110.54642 * 68.37717 * 10 9 8 13 13 N 1.65605 * 104.44589 * 180.02562 * 10 9 8 14 14 C 1.29046 * 119.99823 * 180.02562 * 13 10 9 15 15 O 1.34920 * 120.00046 * 359.97438 * 14 13 10 16 16 C 1.50698 * 119.99912 * 180.02562 * 14 13 10 17 17 S 1.80993 * 109.47096 * 359.97438 * 16 14 13 18 18 C 1.76204 * 99.99983 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00047 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00044 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99947 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99864 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47112 * 90.00008 * 22 20 18 24 24 H 1.48498 * 109.47072 * 209.99623 * 22 20 18 25 25 H 1.48491 * 109.47283 * 329.99952 * 22 20 18 26 26 H 1.07998 * 120.07792 * 359.97438 * 4 3 2 27 27 H 1.08007 * 119.92284 * 179.72249 * 5 4 3 28 28 H 1.08001 * 119.84670 * 179.97438 * 6 5 4 29 29 H 1.08003 * 119.92578 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.46983 * 29.98100 * 9 8 7 31 31 H 1.08998 * 109.46752 * 149.97952 * 9 8 7 32 32 H 0.96694 * 113.99919 * 180.02562 * 15 14 13 33 33 H 1.08997 * 109.47369 * 119.99494 * 16 14 13 34 34 H 1.08999 * 109.46684 * 239.99303 * 16 14 13 35 35 H 0.97009 * 119.99954 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 1.1069 -0.4848 5 6 4.6481 1.1006 -0.4824 6 6 5.3373 0.0016 -0.0005 7 6 4.6494 -1.0972 0.4822 8 6 3.2697 -1.1043 0.4857 9 6 2.5220 -2.3020 1.0125 10 16 2.2211 -3.4706 -0.3419 11 8 1.2937 -2.9281 -1.2719 12 8 3.4416 -4.0524 -0.7790 13 7 1.4020 -4.7230 0.3674 14 6 1.0343 -5.7370 -0.3411 15 8 1.3167 -5.7765 -1.6599 16 6 0.2884 -6.8764 0.3042 17 16 0.0643 -6.5296 2.0664 18 6 -0.8079 -7.9804 2.5552 19 1 -1.0396 -8.7426 1.8261 20 6 -1.1981 -8.1432 3.8773 21 7 -0.9162 -7.2140 4.7659 22 14 -2.1234 -9.6811 4.3953 23 1 -1.1536 -10.7253 4.8129 24 1 -3.0229 -9.3582 5.5319 25 1 -2.9293 -10.1823 3.2532 26 1 2.7322 1.9650 -0.8616 27 1 5.1915 1.9537 -0.8612 28 1 6.4173 0.0018 -0.0013 29 1 5.1935 -1.9517 0.8565 30 1 3.1146 -2.7884 1.7872 31 1 1.5693 -1.9795 1.4326 32 1 1.0013 -6.5743 -2.1059 33 1 -0.6861 -6.9883 -0.1712 34 1 0.8587 -7.7976 0.1850 35 1 -1.1892 -7.3277 5.6898 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042307950.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:38 Heat of formation + Delta-G solvation = -35.886853 kcal Electronic energy + Delta-G solvation = -23709.566126 eV Core-core repulsion = 19927.221060 eV Total energy + Delta-G solvation = -3782.345065 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.038 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.01602 -39.41488 -36.81894 -36.45842 -35.69333 -34.17878 -33.44128 -32.51297 -31.66542 -29.48089 -27.93581 -25.59505 -24.11351 -22.62238 -21.73992 -19.70517 -19.01590 -18.31376 -17.77352 -16.76665 -16.40541 -16.33284 -15.96420 -15.74443 -14.92222 -14.88033 -14.86566 -14.17858 -14.04195 -13.78967 -13.48559 -13.27372 -12.97524 -12.89431 -12.83561 -12.75607 -12.62866 -12.50210 -11.90480 -11.80182 -11.73885 -11.56049 -11.13167 -11.11015 -11.07461 -10.84718 -10.42656 -9.93037 -9.78427 -9.34439 -9.15117 -9.13156 -8.35538 -6.61097 -6.31077 -4.02497 0.08187 0.54069 0.97174 1.62967 2.57311 2.76360 2.90265 2.95338 3.17147 3.23795 3.27685 3.55822 3.61446 3.64796 3.78555 4.07334 4.15552 4.21075 4.50500 4.54478 4.63416 4.90204 5.00521 5.04609 5.13890 5.16656 5.42834 5.45754 5.50900 5.57341 5.78424 5.83936 5.91654 5.99660 6.37555 6.93539 7.01957 7.38927 7.50916 8.25300 9.15162 10.75879 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.018632 B = 0.002876 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.391171 B = 9732.711397 C =10146.925180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C 0.236 3.764 3 C -0.011 4.011 4 C -0.070 4.070 5 C -0.114 4.114 6 C -0.089 4.089 7 C -0.104 4.104 8 C -0.044 4.044 9 C -0.567 4.567 10 S 2.545 3.455 11 O -0.962 6.962 12 O -0.965 6.965 13 N -0.920 5.920 14 C 0.520 3.480 15 O -0.509 6.509 16 C -0.138 4.138 17 S -0.028 6.028 18 C -0.547 4.547 19 H 0.074 0.926 20 C 0.076 3.924 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.139 0.861 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.144 0.856 30 H 0.159 0.841 31 H 0.146 0.854 32 H 0.423 0.577 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.372 11.630 -10.329 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.060 5.060 2 C -0.080 4.080 3 C -0.015 4.015 4 C -0.091 4.091 5 C -0.133 4.133 6 C -0.107 4.107 7 C -0.123 4.123 8 C -0.048 4.048 9 C -0.694 4.694 10 S 2.642 3.358 11 O -0.951 6.951 12 O -0.954 6.954 13 N -0.779 5.779 14 C 0.299 3.701 15 O -0.305 6.305 16 C -0.289 4.289 17 S 0.198 5.802 18 C -0.695 4.695 19 H 0.092 0.908 20 C -0.134 4.134 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.197 1.197 26 H 0.157 0.843 27 H 0.156 0.844 28 H 0.156 0.844 29 H 0.162 0.838 30 H 0.177 0.823 31 H 0.164 0.836 32 H 0.281 0.719 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.427 13.493 -9.735 20.185 hybrid contribution -0.710 -2.348 -0.408 2.487 sum 10.717 11.145 -10.143 18.492 Atomic orbital electron populations 1.81269 1.11678 1.06149 1.06892 1.25523 0.92612 0.94953 0.94872 1.15956 0.84777 0.96152 1.04662 1.21217 0.94520 0.96549 0.96794 1.21212 0.93526 0.99042 0.99509 1.21437 1.00862 0.92595 0.95849 1.21205 0.92244 0.99635 0.99186 1.19095 0.93924 0.92940 0.98831 1.29264 1.10448 1.09915 1.19779 1.06916 0.75798 0.77998 0.75112 1.93606 1.61950 1.81134 1.58386 1.93580 1.48470 1.74532 1.78863 1.74154 1.38055 1.18009 1.47684 1.23152 0.78419 0.89510 0.79001 1.84975 1.75227 1.48632 1.21674 1.23303 1.01681 0.95598 1.08337 1.85617 1.74115 1.28353 0.92149 1.22966 1.42704 1.06395 0.97409 0.90780 1.24970 0.95634 0.97349 0.95417 1.69991 1.44051 1.32967 1.03147 0.86173 0.79356 0.81651 0.78355 1.20237 1.20756 1.19684 0.84304 0.84391 0.84427 0.83798 0.82267 0.83561 0.71854 0.87161 0.87117 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -6.66 18.54 41.84 0.78 -5.88 16 2 C 0.24 3.51 13.68 -22.47 -0.31 3.21 16 3 C -0.01 -0.13 5.73 -106.93 -0.61 -0.75 16 4 C -0.07 -0.59 9.76 -39.17 -0.38 -0.98 16 5 C -0.11 -0.74 10.03 -39.64 -0.40 -1.14 16 6 C -0.09 -0.63 10.04 -39.49 -0.40 -1.02 16 7 C -0.10 -0.99 9.69 -39.64 -0.38 -1.38 16 8 C -0.04 -0.53 5.17 -104.21 -0.54 -1.07 16 9 C -0.57 -7.82 5.90 36.00 0.21 -7.60 16 10 S 2.55 44.85 4.69 -107.50 -0.50 44.35 16 11 O -0.96 -19.27 17.56 -61.33 -1.08 -20.34 16 12 O -0.97 -18.23 17.68 -61.33 -1.08 -19.31 16 13 N -0.92 -17.38 9.37 32.47 0.30 -17.07 16 14 C 0.52 8.79 7.79 -13.45 -0.10 8.69 16 15 O -0.51 -7.00 12.03 -30.94 -0.37 -7.37 16 16 C -0.14 -2.35 6.00 36.00 0.22 -2.14 16 17 S -0.03 -0.69 20.45 -107.50 -2.20 -2.88 16 18 C -0.55 -14.41 9.50 30.94 0.29 -14.12 16 19 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 20 C 0.08 2.05 5.49 -17.43 -0.10 1.95 16 21 N -0.87 -24.75 13.22 55.49 0.73 -24.02 16 22 Si 0.92 20.45 29.55 -169.99 -5.02 15.42 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 27 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 28 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 29 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 30 H 0.16 1.78 8.09 -51.93 -0.42 1.36 16 31 H 0.15 2.04 7.09 -51.92 -0.37 1.67 16 32 H 0.42 2.75 8.82 45.56 0.40 3.16 16 33 H 0.11 1.65 8.14 -51.92 -0.42 1.22 16 34 H 0.11 1.61 8.14 -51.92 -0.42 1.19 16 35 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 351.83 15.07 5.30 5.30 Total: -1.00 -38.81 351.83 -8.11 -46.92 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -2.47 Total: 1.24 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -2.50 Total: -16.35 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 1.81 Total: -46.97 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -2.53 Total: -47.02 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 44.16 SS G_CDS: -2.70 Total: 41.46 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -38.81 -8.11 -46.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042307950.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.036 kcal (2) G-P(sol) polarization free energy of solvation -38.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds