Wall clock time and date at job start Tue Mar 31 2020 05:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31664 * 1 3 3 Si 1.86803 * 120.00221 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99956 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00233 * 3 2 1 7 7 C 1.38606 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99724 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99811 * 0.27772 * 7 2 1 10 10 C 1.76201 * 99.99986 * 179.72306 * 9 7 2 11 11 N 1.31591 * 125.68490 * 0.02562 * 10 9 7 12 12 C 1.33534 * 109.65614 * 180.02562 * 11 10 9 13 13 C 1.36287 * 108.29275 * 0.02562 * 12 11 10 14 14 C 1.47701 * 126.69474 * 180.02562 * 13 12 11 15 15 C 1.39655 * 120.15192 * 184.69608 * 14 13 12 16 16 C 1.37938 * 119.84375 * 179.74352 * 15 14 13 17 17 C 1.38379 * 120.15174 * 0.53286 * 16 15 14 18 18 C 1.38380 * 120.30578 * 359.73970 * 17 16 15 19 19 C 1.37930 * 120.15575 * 359.97438 * 18 17 16 20 20 N 1.36555 * 125.68997 * 179.71531 * 10 9 7 21 21 C 1.40186 * 126.59490 * 359.97438 * 20 10 9 22 22 C 1.38839 * 120.04319 * 244.74591 * 21 20 10 23 23 C 1.38110 * 119.95849 * 179.76375 * 22 21 20 24 24 C 1.38477 * 120.04142 * 0.51086 * 23 22 21 25 25 F 1.35100 * 119.95726 * 179.71587 * 24 23 22 26 26 C 1.38483 * 120.08634 * 359.74655 * 24 23 22 27 27 C 1.38109 * 120.04308 * 359.97438 * 26 24 23 28 28 H 0.97005 * 119.99745 * 359.97438 * 1 2 3 29 29 H 1.08002 * 125.85613 * 180.02562 * 12 11 10 30 30 H 1.08010 * 120.07670 * 0.02562 * 15 14 13 31 31 H 1.08005 * 119.92242 * 180.27997 * 16 15 14 32 32 H 1.07997 * 119.84597 * 179.76458 * 17 16 15 33 33 H 1.07997 * 119.91831 * 180.02562 * 18 17 16 34 34 H 1.07994 * 120.07981 * 180.02562 * 19 18 17 35 35 H 1.08002 * 120.01948 * 0.02562 * 22 21 20 36 36 H 1.08001 * 119.97983 * 180.24966 * 23 22 21 37 37 H 1.08003 * 119.98141 * 180.02562 * 26 24 23 38 38 H 1.07997 * 120.02346 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3166 0.0000 0.0000 3 14 2.2507 1.6177 0.0000 4 1 3.1045 1.6964 -1.2125 5 1 1.2857 2.7464 0.0006 6 1 3.1045 1.6963 1.2125 7 6 2.0096 -1.2004 -0.0005 8 1 3.0897 -1.2004 -0.0010 9 16 1.1286 -2.7262 -0.0086 10 6 2.4783 -3.8589 -0.0146 11 7 3.7533 -3.5336 -0.0124 12 6 4.4994 -4.6410 -0.0189 13 6 3.6653 -5.7188 -0.0262 14 6 4.0616 -7.1416 -0.0345 15 6 3.0906 -8.1397 -0.1402 16 6 3.4683 -9.4663 -0.1526 17 6 4.8049 -9.8094 -0.0495 18 6 5.7718 -8.8257 0.0613 19 6 5.4088 -7.4951 0.0691 20 7 2.3756 -5.2206 -0.0163 21 6 1.1904 -5.9693 -0.0131 22 6 0.8806 -6.7757 1.0738 23 6 -0.2899 -7.5088 1.0772 24 6 -1.1490 -7.4482 -0.0071 25 9 -2.2907 -8.1705 -0.0045 26 6 -0.8392 -6.6486 -1.0945 27 6 0.3275 -5.9095 -1.0992 28 1 -0.4850 0.8401 0.0004 29 1 5.5789 -4.6766 -0.0186 30 1 2.0466 -7.8733 -0.2168 31 1 2.7187 -10.2391 -0.2390 32 1 5.0947 -10.8498 -0.0559 33 1 6.8132 -9.1006 0.1411 34 1 6.1645 -6.7284 0.1552 35 1 1.5524 -6.8264 1.9179 36 1 -0.5332 -8.1331 1.9242 37 1 -1.5107 -6.6022 -1.9391 38 1 0.5687 -5.2857 -1.9471 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044086940.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:34 Heat of formation + Delta-G solvation = 70.402981 kcal Electronic energy + Delta-G solvation = -25689.547939 eV Core-core repulsion = 21924.573879 eV Total energy + Delta-G solvation = -3764.974060 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.074 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.01198 -41.67077 -38.96203 -38.70451 -33.67012 -32.65351 -32.06931 -31.43167 -30.75349 -28.88610 -27.76846 -25.66626 -23.49415 -23.37311 -22.69377 -22.45910 -20.56889 -20.05827 -18.64381 -17.76878 -17.35877 -16.61183 -16.38039 -15.73541 -15.33565 -15.19895 -14.93751 -14.61747 -14.55732 -14.22402 -13.78504 -13.73299 -13.52081 -13.38279 -13.21674 -12.96941 -12.77640 -12.60051 -12.34880 -11.33574 -11.28148 -11.21726 -11.12614 -11.03305 -10.96469 -10.21284 -9.89022 -9.61650 -9.35994 -9.27603 -9.19660 -8.93767 -8.90661 -8.46399 -8.01280 -6.56380 -6.46749 -4.19097 0.76072 1.04481 1.08771 1.43009 2.50019 2.55166 3.20948 3.21784 3.25529 3.31158 3.35217 3.59930 4.01266 4.03063 4.09580 4.60100 4.66851 4.71811 4.89075 4.95300 4.96995 5.03427 5.04896 5.13753 5.18340 5.43521 5.48755 5.52355 5.64654 5.72440 5.83729 5.91763 5.96633 5.99167 6.08118 6.15812 6.40673 6.46242 6.51787 6.59390 6.85516 6.98633 7.15240 7.54864 7.57944 8.36957 8.56652 9.05313 10.61513 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.010780 B = 0.004164 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.693062 B = 6722.227924 C = 9069.348376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.074 3.926 3 Si 0.932 3.068 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.530 4.530 8 H 0.106 0.894 9 S 0.132 5.868 10 C 0.225 3.775 11 N -0.491 5.491 12 C 0.029 3.971 13 C -0.035 4.035 14 C 0.019 3.981 15 C -0.143 4.143 16 C -0.110 4.110 17 C -0.138 4.138 18 C -0.111 4.111 19 C -0.116 4.116 20 N -0.420 5.420 21 C 0.125 3.875 22 C -0.076 4.076 23 C -0.146 4.146 24 C 0.103 3.897 25 F -0.137 7.137 26 C -0.139 4.139 27 C -0.073 4.073 28 H 0.274 0.726 29 H 0.167 0.833 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.700 -18.208 -0.186 18.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.135 4.135 3 Si 0.758 3.242 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.679 4.679 8 H 0.124 0.876 9 S 0.368 5.632 10 C -0.140 4.140 11 N -0.212 5.212 12 C -0.124 4.124 13 C -0.148 4.148 14 C 0.017 3.983 15 C -0.162 4.162 16 C -0.128 4.128 17 C -0.157 4.157 18 C -0.130 4.130 19 C -0.135 4.135 20 N -0.106 5.106 21 C 0.033 3.967 22 C -0.096 4.096 23 C -0.165 4.165 24 C 0.083 3.917 25 F -0.116 7.116 26 C -0.158 4.158 27 C -0.092 4.092 28 H 0.084 0.916 29 H 0.184 0.816 30 H 0.146 0.854 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.459 -17.416 -0.178 17.478 hybrid contribution 1.355 0.250 0.027 1.378 sum 2.815 -17.166 -0.151 17.396 Atomic orbital electron populations 1.69961 1.06043 1.28477 1.46890 1.25068 0.95173 0.99601 0.93619 0.85985 0.79065 0.79775 0.79414 1.19493 1.20827 1.19504 1.23176 0.97232 0.89126 1.58366 0.87646 1.83579 0.97968 0.95678 1.85975 1.27205 1.00115 0.83889 1.02772 1.70758 0.99762 1.27832 1.22872 1.22389 0.98987 0.87462 1.03590 1.19447 0.83339 0.93147 1.18829 1.17932 0.93335 0.88892 0.98150 1.21742 1.00030 0.92711 1.01706 1.20999 0.96090 0.95827 0.99882 1.21119 0.93159 0.99109 1.02291 1.20994 0.99292 0.92616 1.00051 1.21061 0.94645 0.96396 1.01393 1.42728 1.03288 1.05359 1.59210 1.17561 0.87667 0.96228 0.95227 1.21041 0.96318 0.95254 0.97005 1.20960 0.94306 1.02520 0.98724 1.17719 0.83734 0.94191 0.96006 1.91506 1.47641 1.75670 1.96770 1.21025 0.98209 0.97756 0.98806 1.21152 0.92942 0.97546 0.97578 0.91625 0.81590 0.85368 0.86368 0.86465 0.86060 0.85669 0.84350 0.83906 0.83705 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.45 13.22 55.48 0.73 -23.72 16 2 C 0.07 2.01 5.49 -17.49 -0.10 1.91 16 3 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.53 -14.67 9.36 30.87 0.29 -14.38 16 8 H 0.11 2.98 6.88 -52.49 -0.36 2.62 16 9 S 0.13 3.26 21.32 -107.50 -2.29 0.97 16 10 C 0.22 5.07 7.88 -88.06 -0.69 4.38 16 11 N -0.49 -11.31 9.96 -13.02 -0.13 -11.44 16 12 C 0.03 0.54 11.26 -17.51 -0.20 0.35 16 13 C -0.03 -0.61 6.81 -81.80 -0.56 -1.17 16 14 C 0.02 0.28 5.87 -104.97 -0.62 -0.34 16 15 C -0.14 -1.94 8.67 -39.16 -0.34 -2.28 16 16 C -0.11 -1.25 10.03 -39.64 -0.40 -1.65 16 17 C -0.14 -1.44 10.04 -39.48 -0.40 -1.83 16 18 C -0.11 -1.19 10.03 -39.64 -0.40 -1.59 16 19 C -0.12 -1.45 9.58 -39.16 -0.38 -1.83 16 20 N -0.42 -7.92 2.85 -56.88 -0.16 -8.08 16 21 C 0.12 1.99 3.64 -83.59 -0.30 1.69 16 22 C -0.08 -1.04 7.19 -39.41 -0.28 -1.32 16 23 C -0.15 -1.69 10.02 -39.54 -0.40 -2.08 16 24 C 0.10 1.25 7.30 -39.40 -0.29 0.96 16 25 F -0.14 -1.66 17.27 2.25 0.04 -1.62 16 26 C -0.14 -1.71 10.02 -39.54 -0.40 -2.10 16 27 C -0.07 -1.06 9.75 -39.41 -0.38 -1.45 16 28 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.17 2.53 7.32 -52.49 -0.38 2.15 16 30 H 0.13 1.75 3.74 -52.48 -0.20 1.55 16 31 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 1.39 7.07 -52.49 -0.37 1.02 16 35 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 348.16 15.07 5.25 5.25 Total: -1.00 -30.66 348.16 -10.83 -41.48 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -3.41 Total: 3.84 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -5.83 Total: -22.73 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.44 Total: -43.24 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -2.29 Total: 0.97 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.66 -10.83 -41.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044086940.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.887 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds