Wall clock time and date at job start Tue Mar 31 2020 05:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 S 1.81002 * 109.47004 * 180.02562 * 10 9 7 12 12 C 1.76193 * 100.00049 * 180.02562 * 11 10 9 13 13 N 1.31150 * 126.38150 * 0.02562 * 12 11 10 14 14 N 1.28654 * 109.30817 * 180.02562 * 13 12 11 15 15 C 1.30071 * 109.56671 * 0.02562 * 14 13 12 16 16 C 1.50702 * 126.20924 * 179.97438 * 15 14 13 17 17 O 1.42899 * 109.46865 * 90.02406 * 16 15 14 18 18 C 1.35932 * 116.99664 * 179.97438 * 17 16 15 19 19 C 1.38705 * 120.05880 * 0.02562 * 18 17 16 20 20 C 1.38147 * 119.95531 * 180.02562 * 19 18 17 21 21 C 1.38279 * 120.07928 * 359.97438 * 20 19 18 22 22 C 1.38242 * 120.11739 * 0.02599 * 21 20 19 23 23 C 1.38264 * 120.04205 * 359.67963 * 22 21 20 24 24 Cl 1.73595 * 120.03764 * 180.32098 * 23 22 21 25 25 O 1.34638 * 126.38116 * 179.71575 * 12 11 10 26 26 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 28 28 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 31 31 H 1.09004 * 109.47240 * 210.03016 * 16 15 14 32 32 H 1.09007 * 109.46584 * 330.02476 * 16 15 14 33 33 H 1.08001 * 120.02569 * 0.02562 * 19 18 17 34 34 H 1.08005 * 119.96277 * 179.97438 * 20 19 18 35 35 H 1.08001 * 119.93947 * 180.02562 * 21 20 19 36 36 H 1.08003 * 119.97996 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 16 5.8315 -2.6367 -0.0009 12 6 6.1374 -4.3718 -0.0016 13 7 5.2326 -5.3213 -0.0024 14 7 5.8181 -6.4669 -0.0021 15 6 7.1077 -6.2970 -0.0005 16 6 8.1492 -7.3862 0.0009 17 8 8.4804 -7.7302 -1.3459 18 6 9.4123 -8.7038 -1.5228 19 6 9.9953 -9.3156 -0.4228 20 6 10.9426 -10.3044 -0.6050 21 6 11.3099 -10.6854 -1.8825 22 6 10.7309 -10.0778 -2.9810 23 6 9.7779 -9.0918 -2.8044 24 17 9.0448 -8.3348 -4.1839 25 8 7.3435 -4.9701 -0.0071 26 1 -0.4850 0.8401 0.0004 27 1 3.8751 -0.6805 0.8889 28 1 3.8745 -0.6801 -0.8910 29 1 3.6584 -3.1503 0.8892 30 1 3.6578 -3.1506 -0.8908 31 1 9.0427 -7.0339 0.5163 32 1 7.7561 -8.2640 0.5140 33 1 9.7089 -9.0190 0.5754 34 1 11.3969 -10.7806 0.2514 35 1 12.0504 -11.4591 -2.0223 36 1 11.0197 -10.3769 -3.9778 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048302986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:57 Heat of formation + Delta-G solvation = 25.963587 kcal Electronic energy + Delta-G solvation = -22545.964825 eV Core-core repulsion = 18764.258090 eV Total energy + Delta-G solvation = -3781.706735 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.043 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.18562 -40.76800 -38.17475 -36.72205 -36.27729 -33.91190 -32.67949 -31.43114 -31.36345 -30.38422 -28.14600 -25.73812 -24.18683 -23.66714 -23.01611 -22.23827 -21.01865 -19.12402 -18.45643 -17.51761 -17.21006 -17.01030 -16.76748 -16.68222 -15.96086 -15.31184 -15.00604 -14.60083 -14.43213 -14.20295 -13.91397 -13.69855 -13.33857 -12.86161 -12.53136 -12.46412 -12.11481 -12.05862 -11.88209 -11.80297 -11.77147 -11.41847 -11.34115 -11.19026 -10.68153 -10.61139 -10.38251 -10.21360 -9.83325 -9.45032 -9.39640 -8.76420 -8.68435 -7.81682 -6.17654 -4.19570 0.58681 0.60781 0.74493 0.75731 1.78252 1.97055 2.24046 2.45458 2.98202 3.06588 3.22950 3.31125 3.32058 3.80623 4.15360 4.19366 4.32507 4.39474 4.50479 4.63018 4.70565 4.87439 4.88029 5.10694 5.14231 5.14412 5.27530 5.48934 5.63149 5.67940 5.76208 5.84467 6.03197 6.31464 6.60345 6.86797 6.98614 7.51896 8.07417 8.34159 8.84919 9.40539 10.94677 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.026834 B = 0.001886 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.207759 B =14846.318380 C =15221.544700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.877 3.123 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.079 0.921 9 C 0.002 3.998 10 C -0.083 4.083 11 S 0.037 5.963 12 C 0.162 3.838 13 N -0.289 5.289 14 N -0.239 5.239 15 C 0.134 3.866 16 C 0.168 3.832 17 O -0.298 6.298 18 C 0.142 3.858 19 C -0.199 4.199 20 C -0.073 4.073 21 C -0.145 4.145 22 C -0.072 4.072 23 C -0.067 4.067 24 Cl -0.051 7.051 25 O -0.203 6.203 26 H 0.267 0.733 27 H 0.030 0.970 28 H 0.026 0.974 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.140 0.860 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.464 -20.702 -1.289 33.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.097 0.903 9 C -0.038 4.038 10 C -0.231 4.231 11 S 0.270 5.730 12 C -0.153 4.153 13 N -0.142 5.142 14 N -0.089 5.089 15 C -0.082 4.082 16 C 0.091 3.909 17 O -0.210 6.210 18 C 0.095 3.905 19 C -0.217 4.217 20 C -0.092 4.092 21 C -0.163 4.163 22 C -0.091 4.091 23 C -0.094 4.094 24 Cl -0.022 7.022 25 O -0.084 6.084 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.133 0.867 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 25.758 -20.047 -1.561 32.678 hybrid contribution 0.598 0.428 0.023 0.735 sum 26.356 -19.620 -1.537 32.893 Atomic orbital electron populations 1.69884 1.06234 1.27245 1.49741 1.24952 0.94770 0.99079 0.94162 0.86817 0.80405 0.83580 0.78810 1.19958 1.21014 1.18873 1.20839 0.87641 0.95130 1.52536 0.90289 1.19463 0.98108 0.88343 0.97896 1.24082 0.86035 1.05593 1.07355 1.86166 1.13931 0.83690 1.89257 1.30472 0.80162 1.04198 1.00499 1.75093 1.25637 0.93109 1.20323 1.74113 1.03276 1.18634 1.12853 1.26864 0.94268 0.81645 1.05418 1.20670 0.94265 0.92510 0.83407 1.86211 1.55119 1.52116 1.27548 1.18615 0.89818 0.89276 0.92758 1.21277 1.01667 1.01038 0.97755 1.21078 0.95209 0.95127 0.97754 1.21084 1.01796 1.01581 0.91845 1.20982 0.93894 0.93661 1.00533 1.20269 1.01622 1.00941 0.86591 1.98402 1.81934 1.80957 1.40923 1.84973 1.33499 1.19529 1.70434 0.92346 0.95176 0.95602 0.88382 0.88403 0.88266 0.86737 0.84273 0.84825 0.84756 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 20.68 27.47 -169.99 -4.67 16.01 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 7 C -0.52 -14.19 9.66 -34.44 -0.33 -14.52 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 9 C 0.00 0.05 4.04 -27.88 -0.11 -0.07 16 10 C -0.08 -1.59 5.17 37.16 0.19 -1.40 16 11 S 0.04 0.61 22.31 -107.50 -2.40 -1.79 16 12 C 0.16 2.74 8.53 52.47 0.45 3.19 16 13 N -0.29 -5.32 11.63 30.29 0.35 -4.97 16 14 N -0.24 -4.00 12.20 32.59 0.40 -3.60 16 15 C 0.13 1.84 8.11 -13.02 -0.11 1.73 16 16 C 0.17 1.48 5.36 36.01 0.19 1.67 16 17 O -0.30 -3.26 9.58 -19.52 -0.19 -3.44 16 18 C 0.14 1.29 6.68 -39.20 -0.26 1.03 16 19 C -0.20 -1.24 9.04 -39.44 -0.36 -1.60 16 20 C -0.07 -0.37 10.04 -39.60 -0.40 -0.76 16 21 C -0.14 -0.74 10.04 -39.56 -0.40 -1.13 16 22 C -0.07 -0.48 9.83 -39.57 -0.39 -0.87 16 23 C -0.07 -0.62 6.33 -39.36 -0.25 -0.86 16 24 Cl -0.05 -0.55 28.50 -51.86 -1.48 -2.02 16 25 O -0.20 -3.10 10.90 3.51 0.04 -3.06 16 26 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 28 H 0.03 0.56 7.57 -51.93 -0.39 0.17 16 29 H 0.10 1.90 8.14 -51.91 -0.42 1.47 16 30 H 0.10 1.92 8.14 -51.92 -0.42 1.50 16 31 H 0.10 0.57 7.66 -51.93 -0.40 0.17 16 32 H 0.11 0.72 7.66 -51.93 -0.40 0.32 16 33 H 0.14 0.53 6.30 -52.49 -0.33 0.20 16 34 H 0.13 0.33 8.06 -52.48 -0.42 -0.10 16 35 H 0.13 0.36 8.06 -52.49 -0.42 -0.07 16 36 H 0.14 0.68 8.06 -52.48 -0.42 0.25 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -32.33 348.76 -7.38 -39.70 By element: Atomic # 1 Polarization: -0.98 SS G_CDS: -3.59 Total: -4.57 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -1.87 Total: -11.63 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 1.52 Total: -34.44 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.15 Total: -6.51 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -2.40 Total: -1.79 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.48 Total: -2.02 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.33 -7.38 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048302986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.666 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds