Wall clock time and date at job start Tue Mar 31 2020 05:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47091 * 2 1 4 4 C 1.53001 * 109.47063 * 119.99989 * 2 1 3 5 5 N 1.46498 * 109.47175 * 295.00079 * 4 2 1 6 6 C 1.34775 * 119.99852 * 179.97438 * 5 4 2 7 7 O 1.21587 * 120.00606 * 359.97438 * 6 5 4 8 8 N 1.34786 * 119.99808 * 179.97438 * 6 5 4 9 9 C 1.39940 * 119.99924 * 175.49624 * 8 6 5 10 10 C 1.38965 * 120.03405 * 214.85221 * 9 8 6 11 11 C 1.38162 * 120.06281 * 179.74922 * 10 9 8 12 12 C 1.38168 * 120.14237 * 0.54483 * 11 10 9 13 13 C 1.38912 * 120.06691 * 359.71012 * 12 11 10 14 14 O 1.35749 * 120.03189 * 179.97438 * 13 12 11 15 15 C 1.34837 * 116.99999 * 5.36452 * 14 13 12 16 16 H 1.08000 * 119.99787 * 354.96227 * 15 14 13 17 17 C 1.38645 * 119.99854 * 174.96385 * 15 14 13 18 18 N 1.31564 * 120.00298 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00017 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46803 * 60.00227 * 19 17 15 21 21 H 1.48496 * 109.47364 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46965 * 300.00259 * 19 17 15 23 23 C 1.38708 * 120.03651 * 35.12421 * 9 8 6 24 24 C 1.50698 * 109.46746 * 239.99836 * 2 1 3 25 25 C 1.38232 * 120.00184 * 299.72564 * 24 2 1 26 26 C 1.38234 * 119.99855 * 179.81365 * 25 24 2 27 27 C 1.38237 * 119.99993 * 0.39772 * 26 25 24 28 28 C 1.38228 * 120.00138 * 359.85362 * 27 26 25 29 29 C 1.38235 * 120.00112 * 359.96166 * 28 27 26 30 30 H 1.08997 * 109.47171 * 299.99900 * 1 2 3 31 31 H 1.09003 * 109.46814 * 59.99867 * 1 2 3 32 32 H 1.08995 * 109.47091 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47166 * 54.99699 * 4 2 1 34 34 H 1.08991 * 109.47203 * 174.99914 * 4 2 1 35 35 H 0.97004 * 120.00006 * 359.97438 * 5 4 2 36 36 H 0.96998 * 119.99748 * 355.49340 * 8 6 5 37 37 H 1.07998 * 119.96589 * 359.97438 * 10 9 8 38 38 H 1.08005 * 119.92506 * 180.27892 * 11 10 9 39 39 H 1.07994 * 119.96499 * 179.72637 * 12 11 10 40 40 H 0.96997 * 119.99986 * 179.97438 * 18 17 15 41 41 H 1.08003 * 120.06734 * 359.96113 * 23 9 8 42 42 H 1.07994 * 120.00085 * 0.02562 * 25 24 2 43 43 H 1.08007 * 120.00257 * 180.22958 * 26 25 24 44 44 H 1.08008 * 119.99897 * 179.83561 * 27 26 25 45 45 H 1.07997 * 120.00255 * 179.97438 * 28 27 26 46 46 H 1.07994 * 120.00496 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 0.0353 2.4424 6 6 1.9956 -0.4137 3.6659 7 8 2.6264 -1.4469 3.7797 8 7 1.6394 0.2827 4.7636 9 6 1.9127 -0.2301 6.0367 10 6 1.0259 -0.0042 7.0826 11 6 1.2925 -0.5145 8.3385 12 6 2.4463 -1.2412 8.5615 13 6 3.3393 -1.4659 7.5214 14 8 4.4729 -2.1795 7.7415 15 6 4.6190 -2.7359 8.9610 16 1 3.8933 -2.5369 9.7357 17 6 5.7008 -3.5634 9.2203 18 7 6.5845 -3.8062 8.2764 19 14 5.9036 -4.3336 10.9100 20 1 4.7227 -5.1817 11.2123 21 1 7.1313 -5.1688 10.9292 22 1 6.0183 -3.2622 11.9319 23 6 3.0716 -0.9595 6.2574 24 6 2.0323 -0.7104 -1.2305 25 6 1.7030 -2.0355 -1.4463 26 6 2.1605 -2.6860 -2.5770 27 6 2.9542 -2.0138 -3.4876 28 6 3.2877 -0.6903 -3.2691 29 6 2.8271 -0.0386 -2.1404 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7198 1.2952 34 1 3.1263 -0.7995 1.2056 35 1 1.1489 0.8594 2.3517 36 1 1.1938 1.1393 4.6711 37 1 0.1258 0.5678 6.9126 38 1 0.5996 -0.3414 9.1487 39 1 2.6540 -1.6350 9.5454 40 1 7.3415 -4.3848 8.4580 41 1 3.7642 -1.1333 5.4470 42 1 1.0855 -2.5615 -0.7334 43 1 1.9002 -3.7203 -2.7476 44 1 3.3138 -2.5229 -4.3697 45 1 3.9081 -0.1653 -3.9803 46 1 3.0880 0.9953 -1.9695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048514292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:47 Heat of formation + Delta-G solvation = -4.244097 kcal Electronic energy + Delta-G solvation = -27631.517620 eV Core-core repulsion = 23679.847148 eV Total energy + Delta-G solvation = -3951.670471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.40335 -39.72792 -38.65803 -36.87953 -36.00535 -34.01729 -33.23159 -32.17761 -31.18870 -29.78164 -29.29696 -28.38263 -26.49643 -25.21014 -23.64315 -22.84917 -22.18083 -21.35216 -20.65810 -20.36399 -18.39542 -18.15684 -17.10810 -17.02281 -16.13704 -15.75001 -15.42049 -15.15479 -14.98406 -14.74067 -14.52151 -14.27501 -14.10620 -13.98071 -13.61419 -13.54008 -13.46303 -13.19595 -12.92767 -12.66647 -12.41793 -12.37750 -11.77387 -11.66362 -11.56979 -11.41248 -11.16995 -11.15575 -11.01312 -10.94025 -10.72530 -10.44220 -9.91240 -9.64207 -9.20055 -9.17736 -9.06255 -8.99886 -8.75141 -7.59598 -7.11290 -6.35601 -3.94882 1.05708 1.13498 2.16090 2.41738 2.73252 3.18168 3.19622 3.22590 3.41324 3.50665 4.02294 4.19578 4.35969 4.45286 4.66579 4.69451 4.72991 4.79525 4.86804 5.00550 5.18762 5.19499 5.25996 5.37764 5.42345 5.46373 5.60200 5.68218 5.72883 5.76169 5.80802 5.86160 5.89754 6.15729 6.19068 6.25546 6.29505 6.33786 6.38011 6.49114 6.60380 6.72494 6.90351 7.09547 7.13339 7.30136 7.41141 7.56419 7.88947 8.08555 8.10777 8.74796 9.09068 9.81448 10.82352 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.002092 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.248179 B =13378.390614 C =14987.504678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.063 4.063 3 H 0.085 0.915 4 C 0.147 3.853 5 N -0.747 5.747 6 C 0.697 3.303 7 O -0.558 6.558 8 N -0.682 5.682 9 C 0.192 3.808 10 C -0.238 4.238 11 C -0.059 4.059 12 C -0.247 4.247 13 C 0.167 3.833 14 O -0.174 6.174 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.186 4.186 24 C -0.075 4.075 25 C -0.111 4.111 26 C -0.118 4.118 27 C -0.123 4.123 28 C -0.120 4.120 29 C -0.114 4.114 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.393 0.607 36 H 0.401 0.599 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.127 0.873 40 H 0.270 0.730 41 H 0.135 0.865 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.788 10.067 -20.007 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 H 0.103 0.897 4 C 0.022 3.978 5 N -0.404 5.404 6 C 0.398 3.602 7 O -0.433 6.433 8 N -0.329 5.329 9 C 0.099 3.901 10 C -0.259 4.259 11 C -0.078 4.078 12 C -0.267 4.267 13 C 0.112 3.888 14 O -0.077 6.077 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.496 5.496 19 Si 0.766 3.234 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.208 4.208 24 C -0.076 4.076 25 C -0.129 4.129 26 C -0.136 4.136 27 C -0.141 4.141 28 C -0.138 4.138 29 C -0.132 4.132 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.227 0.773 36 H 0.235 0.765 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.145 0.855 40 H 0.080 0.920 41 H 0.153 0.847 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.771 8.881 -20.134 24.956 hybrid contribution -0.404 0.421 0.722 0.928 sum -12.174 9.302 -19.411 24.730 Atomic orbital electron populations 1.21873 0.93646 1.02718 1.01933 1.20368 0.96602 0.99563 0.91620 0.89660 1.21239 1.00421 0.94818 0.81292 1.45079 1.61881 1.28832 1.04583 1.15968 0.80329 0.83667 0.80277 1.91034 1.42981 1.24298 1.84971 1.42455 1.63414 1.23300 1.03766 1.16948 0.93417 0.97458 0.82321 1.20235 1.00543 1.11484 0.93624 1.20477 0.95983 0.95833 0.95483 1.21167 0.97444 1.07872 1.00222 1.19149 0.86607 0.90670 0.92367 1.83996 1.31857 1.57268 1.34570 1.21293 1.10869 1.27664 0.86942 0.89071 1.25297 0.95169 0.96496 0.99632 1.70051 1.11948 1.34947 1.32687 0.85784 0.78190 0.79087 0.80351 1.19524 1.20341 1.19545 1.20203 0.98263 1.06281 0.96017 1.19638 0.97966 0.94310 0.95646 1.21069 1.00046 0.94183 0.97559 1.21177 0.97937 0.99973 0.94486 1.21175 0.98551 0.94884 0.99516 1.21137 1.00019 0.95017 0.97629 1.21070 0.97735 0.99948 0.94443 0.92143 0.92227 0.92028 0.91217 0.91205 0.77290 0.76513 0.87501 0.87105 0.85521 0.92028 0.84692 0.85854 0.85985 0.86185 0.86101 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.88 37.16 0.33 -0.58 16 2 C -0.06 -0.47 2.60 -91.77 -0.24 -0.70 16 3 H 0.09 0.54 7.88 -51.93 -0.41 0.13 16 4 C 0.15 1.56 4.80 -4.04 -0.02 1.54 16 5 N -0.75 -8.10 5.29 -65.23 -0.34 -8.45 16 6 C 0.70 11.24 8.41 -86.91 -0.73 10.51 16 7 O -0.56 -12.13 13.78 5.29 0.07 -12.06 16 8 N -0.68 -10.12 5.34 -14.24 -0.08 -10.20 16 9 C 0.19 3.70 6.30 -83.71 -0.53 3.17 16 10 C -0.24 -4.15 9.96 -39.34 -0.39 -4.54 16 11 C -0.06 -1.10 10.03 -39.64 -0.40 -1.49 16 12 C -0.25 -5.57 9.17 -39.36 -0.36 -5.93 16 13 C 0.17 4.32 6.64 -39.13 -0.26 4.06 16 14 O -0.17 -5.26 9.76 0.03 0.00 -5.26 16 15 C -0.39 -11.37 9.49 30.88 0.29 -11.07 16 16 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 17 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 18 N -0.86 -26.31 13.67 55.48 0.76 -25.56 16 19 Si 0.94 21.14 29.55 -169.99 -5.02 16.11 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 C -0.19 -4.44 8.64 -39.21 -0.34 -4.78 16 24 C -0.08 -0.64 4.78 -104.62 -0.50 -1.14 16 25 C -0.11 -0.97 8.76 -39.59 -0.35 -1.32 16 26 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 27 C -0.12 -0.97 10.05 -39.59 -0.40 -1.36 16 28 C -0.12 -0.93 10.05 -39.59 -0.40 -1.33 16 29 C -0.11 -0.92 9.67 -39.58 -0.38 -1.30 16 30 H 0.06 0.34 7.18 -51.93 -0.37 -0.04 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.42 7.40 -51.93 -0.38 0.04 16 33 H 0.07 0.82 7.56 -51.93 -0.39 0.43 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.39 2.83 7.67 -40.82 -0.31 2.52 16 36 H 0.40 4.11 8.84 -40.82 -0.36 3.75 16 37 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 39 H 0.13 2.82 5.63 -52.49 -0.30 2.52 16 40 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.14 3.49 6.22 -52.48 -0.33 3.17 16 42 H 0.12 1.00 7.16 -52.49 -0.38 0.62 16 43 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 44 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 45 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.12 0.77 7.95 -52.49 -0.42 0.36 16 LS Contribution 386.04 15.07 5.82 5.82 Total: -1.00 -36.35 386.04 -9.97 -46.32 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.02 Total: 9.91 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -5.16 Total: -16.64 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.34 Total: -44.20 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.07 Total: -17.32 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.35 -9.97 -46.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048514292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.073 kcal (2) G-P(sol) polarization free energy of solvation -36.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds