Wall clock time and date at job start Tue Mar 31 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46695 * 2 1 4 4 C 1.52996 * 109.47210 * 240.00056 * 2 1 3 5 5 N 1.46500 * 109.47243 * 65.00138 * 4 2 1 6 6 C 1.34785 * 119.99710 * 180.02562 * 5 4 2 7 7 O 1.21581 * 119.99826 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99633 * 179.97438 * 6 5 4 9 9 C 1.39946 * 119.99766 * 175.49168 * 8 6 5 10 10 C 1.38959 * 120.03585 * 214.84929 * 9 8 6 11 11 C 1.38153 * 120.06825 * 179.74727 * 10 9 8 12 12 C 1.38170 * 120.13802 * 0.55585 * 11 10 9 13 13 C 1.38906 * 120.06890 * 359.69790 * 12 11 10 14 14 O 1.35744 * 120.03498 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00072 * 5.36459 * 14 13 12 16 16 H 1.08002 * 120.00202 * 354.96911 * 15 14 13 17 17 C 1.38650 * 120.00251 * 174.96483 * 15 14 13 18 18 N 1.31559 * 120.00529 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99899 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47379 * 90.00199 * 19 17 15 21 21 H 1.48504 * 109.47155 * 209.99909 * 19 17 15 22 22 H 1.48502 * 109.47075 * 329.99852 * 19 17 15 23 23 C 1.38705 * 120.03551 * 35.13132 * 9 8 6 24 24 C 1.50695 * 109.47014 * 119.99622 * 2 1 3 25 25 C 1.38232 * 119.99868 * 59.72900 * 24 2 1 26 26 C 1.38233 * 120.00258 * 179.78567 * 25 24 2 27 27 C 1.38242 * 119.99657 * 0.44613 * 26 25 24 28 28 C 1.38234 * 119.99873 * 359.80875 * 27 26 25 29 29 C 1.38234 * 120.00174 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47669 * 300.00553 * 1 2 3 31 31 H 1.09012 * 109.47163 * 60.00242 * 1 2 3 32 32 H 1.08995 * 109.47339 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46983 * 185.00126 * 4 2 1 34 34 H 1.09001 * 109.47174 * 304.99822 * 4 2 1 35 35 H 0.96997 * 120.00335 * 359.97438 * 5 4 2 36 36 H 0.97006 * 120.00189 * 355.49237 * 8 6 5 37 37 H 1.08001 * 119.96418 * 0.02562 * 10 9 8 38 38 H 1.08004 * 119.93594 * 180.27646 * 11 10 9 39 39 H 1.08001 * 119.96838 * 179.72575 * 12 11 10 40 40 H 0.96993 * 120.00541 * 179.97438 * 18 17 15 41 41 H 1.08000 * 120.06962 * 359.94472 * 23 9 8 42 42 H 1.08004 * 120.00125 * 0.02562 * 25 24 2 43 43 H 1.07998 * 120.00803 * 180.27419 * 26 25 24 44 44 H 1.08002 * 119.99579 * 179.83640 * 27 26 25 45 45 H 1.08007 * 119.99587 * 180.02562 * 28 27 26 46 46 H 1.07992 * 119.99890 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6525 0.0354 -2.4424 6 6 1.9957 -0.4137 -3.6660 7 8 2.6272 -1.4463 -3.7794 8 7 1.6387 0.2821 -4.7636 9 6 2.0748 -0.1323 -6.0272 10 6 2.3734 0.8103 -7.0036 11 6 2.8090 0.4021 -8.2495 12 6 2.9380 -0.9441 -8.5326 13 6 2.6361 -1.8914 -7.5626 14 8 2.7636 -3.2137 -7.8412 15 6 3.2929 -3.5389 -9.0379 16 1 3.5180 -2.7651 -9.7570 17 6 3.5484 -4.8665 -9.3454 18 7 4.0653 -5.1837 -10.5128 19 14 3.1586 -6.2049 -8.1019 20 1 1.7680 -6.6831 -8.3088 21 1 4.1030 -7.3369 -8.2806 22 1 3.2949 -5.6587 -6.7277 23 6 2.2038 -1.4844 -6.3082 24 6 2.0323 -0.7103 1.2305 25 6 1.6937 -2.0321 1.4521 26 6 2.1580 -2.6850 2.5786 27 6 2.9535 -2.0134 3.4881 28 6 3.2877 -0.6901 3.2691 29 6 2.8270 -0.0385 2.1404 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1263 -0.7994 -1.2055 34 1 1.6054 -1.7198 -1.2951 35 1 1.1483 0.8591 -2.3518 36 1 1.0796 1.0702 -4.6778 37 1 2.2693 1.8632 -6.7868 38 1 3.0448 1.1367 -9.0054 39 1 3.2745 -1.2603 -9.5090 40 1 4.2443 -6.1124 -10.7278 41 1 1.9688 -2.2190 -5.5522 42 1 1.0695 -2.5558 0.7432 43 1 1.8972 -3.7190 2.7496 44 1 3.3141 -2.5228 4.3695 45 1 3.9095 -0.1655 3.9796 46 1 3.0878 0.9955 1.9695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048514294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:51 Heat of formation + Delta-G solvation = -2.954891 kcal Electronic energy + Delta-G solvation = -27718.727123 eV Core-core repulsion = 23767.112556 eV Total energy + Delta-G solvation = -3951.614567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.50047 -39.79878 -38.83120 -37.02653 -36.11383 -34.12115 -33.30835 -32.30683 -31.24174 -29.85713 -29.47827 -28.54721 -26.56384 -25.14120 -23.70860 -22.91607 -22.31378 -21.30532 -20.72551 -20.42103 -18.50541 -18.05409 -17.38103 -17.12296 -16.22453 -15.75963 -15.53248 -15.25887 -15.13353 -14.82842 -14.58274 -14.37561 -14.07348 -13.89348 -13.74495 -13.63038 -13.54716 -13.24951 -12.87852 -12.79111 -12.45190 -12.31744 -12.23015 -11.81048 -11.63168 -11.53787 -11.21841 -11.16774 -11.06228 -10.93670 -10.79973 -10.21280 -9.93459 -9.68701 -9.27806 -9.24347 -9.15527 -9.05239 -8.80049 -7.72482 -7.25271 -6.34888 -4.01202 1.00270 1.08150 2.05355 2.29102 2.64084 3.27810 3.32249 3.33218 3.45232 3.51631 4.08909 4.30050 4.32430 4.38043 4.57243 4.62834 4.67893 4.73811 4.81684 4.94836 4.97217 5.14247 5.18505 5.20688 5.36307 5.39917 5.53702 5.61039 5.67331 5.70633 5.73950 5.77692 5.81014 6.11455 6.13793 6.17392 6.20441 6.27529 6.28892 6.37209 6.47090 6.67066 6.74843 6.98482 7.14576 7.20852 7.39191 7.66107 7.87441 8.00142 8.10217 8.64446 9.00937 9.64865 10.72590 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.002290 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.247695 B =12223.342272 C =13985.589393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.062 4.062 3 H 0.085 0.915 4 C 0.147 3.853 5 N -0.746 5.746 6 C 0.698 3.302 7 O -0.561 6.561 8 N -0.682 5.682 9 C 0.191 3.809 10 C -0.229 4.229 11 C -0.060 4.060 12 C -0.234 4.234 13 C 0.173 3.827 14 O -0.214 6.214 15 C -0.387 4.387 16 H 0.107 0.893 17 C 0.064 3.936 18 N -0.881 5.881 19 Si 0.902 3.098 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.257 1.257 23 C -0.186 4.186 24 C -0.075 4.075 25 C -0.111 4.111 26 C -0.118 4.118 27 C -0.123 4.123 28 C -0.120 4.120 29 C -0.114 4.114 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.394 0.606 36 H 0.402 0.598 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.134 0.866 40 H 0.279 0.721 41 H 0.135 0.865 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.126 14.064 25.745 30.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 H 0.103 0.897 4 C 0.022 3.978 5 N -0.403 5.403 6 C 0.399 3.601 7 O -0.436 6.436 8 N -0.329 5.329 9 C 0.097 3.903 10 C -0.250 4.250 11 C -0.079 4.079 12 C -0.253 4.253 13 C 0.120 3.880 14 O -0.119 6.119 15 C -0.463 4.463 16 H 0.125 0.875 17 C -0.139 4.139 18 N -0.519 5.519 19 Si 0.728 3.272 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.181 1.181 23 C -0.208 4.208 24 C -0.076 4.076 25 C -0.129 4.129 26 C -0.136 4.136 27 C -0.141 4.141 28 C -0.138 4.138 29 C -0.132 4.132 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.228 0.772 36 H 0.236 0.764 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.151 0.849 40 H 0.089 0.911 41 H 0.153 0.847 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.500 12.694 25.684 29.378 hybrid contribution -0.498 0.224 0.408 0.681 sum -6.998 12.918 26.092 29.944 Atomic orbital electron populations 1.21880 0.93600 1.02767 1.01982 1.20364 0.96636 0.99541 0.91590 0.89658 1.21243 1.00360 0.94852 0.81312 1.45083 1.61875 1.28799 1.04552 1.15954 0.80165 0.83738 0.80274 1.91015 1.43921 1.23569 1.85088 1.42452 1.54538 1.31625 1.04296 1.16923 0.98264 0.92277 0.82816 1.20310 1.12403 0.97274 0.95016 1.20537 0.96852 0.95146 0.95352 1.21293 1.10056 0.92701 1.01298 1.18878 0.92801 0.84136 0.92178 1.83583 1.71808 1.19036 1.37470 1.20782 1.40774 0.95016 0.89707 0.87543 1.24448 0.95447 0.97309 0.96731 1.69645 1.41739 1.19715 1.20796 0.86215 0.78367 0.80187 0.82462 1.19918 1.20837 1.18066 1.20197 1.10210 0.94585 0.95791 1.19634 0.97966 0.94348 0.95649 1.21075 0.99967 0.94221 0.97611 1.21183 0.97870 0.99976 0.94529 1.21183 0.98560 0.94886 0.99486 1.21143 1.00022 0.95018 0.97622 1.21065 0.97811 0.99909 0.94425 0.92178 0.92133 0.91992 0.91258 0.91184 0.77215 0.76393 0.87267 0.86775 0.84870 0.91123 0.84701 0.85844 0.85966 0.86166 0.86088 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.88 37.16 0.33 -0.52 16 2 C -0.06 -0.43 2.60 -91.78 -0.24 -0.66 16 3 H 0.09 0.49 7.88 -51.93 -0.41 0.08 16 4 C 0.15 1.44 4.81 -4.04 -0.02 1.42 16 5 N -0.75 -7.47 5.29 -65.23 -0.34 -7.81 16 6 C 0.70 10.55 8.41 -86.91 -0.73 9.82 16 7 O -0.56 -11.50 13.78 5.29 0.07 -11.42 16 8 N -0.68 -9.43 5.34 -14.24 -0.08 -9.51 16 9 C 0.19 3.47 6.30 -83.71 -0.53 2.94 16 10 C -0.23 -3.81 9.96 -39.35 -0.39 -4.20 16 11 C -0.06 -1.09 10.03 -39.64 -0.40 -1.49 16 12 C -0.23 -5.18 9.17 -39.36 -0.36 -5.54 16 13 C 0.17 4.26 6.64 -39.13 -0.26 4.00 16 14 O -0.21 -5.99 8.58 0.07 0.00 -5.99 16 15 C -0.39 -11.29 9.95 30.88 0.31 -10.98 16 16 H 0.11 3.13 5.43 -52.49 -0.29 2.84 16 17 C 0.06 1.85 5.49 -17.52 -0.10 1.75 16 18 N -0.88 -26.05 13.96 55.48 0.77 -25.28 16 19 Si 0.90 22.71 28.62 -169.99 -4.86 17.85 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.26 -6.66 7.11 56.52 0.40 -6.25 16 23 C -0.19 -4.16 8.64 -39.21 -0.34 -4.50 16 24 C -0.08 -0.60 4.78 -104.63 -0.50 -1.10 16 25 C -0.11 -0.92 8.76 -39.59 -0.35 -1.27 16 26 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 27 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 28 C -0.12 -0.87 10.05 -39.58 -0.40 -1.26 16 29 C -0.11 -0.85 9.67 -39.58 -0.38 -1.23 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.31 7.18 -51.92 -0.37 -0.07 16 32 H 0.06 0.40 7.37 -51.93 -0.38 0.02 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.78 7.58 -51.93 -0.39 0.38 16 35 H 0.39 2.54 7.67 -40.82 -0.31 2.22 16 36 H 0.40 3.75 8.84 -40.82 -0.36 3.39 16 37 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.13 3.07 5.63 -52.49 -0.30 2.77 16 40 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.14 3.21 6.22 -52.49 -0.33 2.88 16 42 H 0.12 0.94 7.16 -52.48 -0.38 0.57 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 44 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 46 H 0.12 0.70 7.95 -52.49 -0.42 0.28 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -34.94 384.92 -9.81 -44.75 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.03 Total: 7.07 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -5.15 Total: -15.46 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.35 Total: -42.60 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.07 Total: -17.41 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.86 Total: 17.85 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.94 -9.81 -44.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048514294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.800 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds