Wall clock time and date at job start Tue Mar 31 2020 05:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31380 * 1 3 3 Si 1.86806 * 119.99667 * 2 1 4 4 H 1.48504 * 109.47038 * 274.99916 * 3 2 1 5 5 H 1.48496 * 109.46984 * 34.99524 * 3 2 1 6 6 H 1.48497 * 109.47011 * 154.99598 * 3 2 1 7 7 C 1.39032 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99839 * 210.51271 * 7 2 1 9 9 N 1.36778 * 119.99990 * 30.51951 * 7 2 1 10 10 C 1.34780 * 120.00102 * 195.85629 * 9 7 2 11 11 O 1.21861 * 119.99786 * 4.86750 * 10 9 7 12 12 C 1.41207 * 120.00257 * 184.87637 * 10 9 7 13 13 C 1.35873 * 120.00129 * 173.90465 * 12 10 9 14 14 C 1.41407 * 119.99841 * 179.97438 * 13 12 10 15 15 C 1.37163 * 125.46597 * 179.97438 * 14 13 12 16 16 C 1.37353 * 113.21892 * 179.97438 * 15 14 13 17 17 C 1.34037 * 115.11851 * 0.02562 * 16 15 14 18 18 Br 1.89103 * 124.49865 * 180.02562 * 17 16 15 19 19 S 1.70606 * 111.00637 * 359.76190 * 17 16 15 20 20 C 1.46494 * 120.00151 * 15.57479 * 9 7 2 21 21 C 1.53006 * 117.50094 * 130.04907 * 20 9 7 22 22 C 1.52999 * 60.00179 * 252.51605 * 21 20 9 23 23 H 0.96997 * 120.00385 * 359.97438 * 1 2 3 24 24 H 1.08006 * 119.99843 * 353.90041 * 12 10 9 25 25 H 1.08000 * 119.99761 * 359.97438 * 13 12 10 26 26 H 1.07996 * 123.39021 * 359.97438 * 15 14 13 27 27 H 1.08006 * 122.44051 * 180.02562 * 16 15 14 28 28 H 1.08999 * 115.55339 * 275.75785 * 20 9 7 29 29 H 1.09007 * 117.49467 * 0.02562 * 21 20 9 30 30 H 1.09000 * 117.49808 * 145.01810 * 21 20 9 31 31 H 1.09005 * 117.49526 * 252.51057 * 22 21 20 32 32 H 1.08997 * 117.52083 * 107.47871 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.3895 2.1075 -1.3948 5 1 1.5019 2.6199 0.8029 6 1 3.5941 1.4122 0.5918 7 6 2.0090 -1.2040 -0.0005 8 1 2.9769 -1.2689 0.4743 9 7 1.4673 -2.3063 -0.6026 10 6 1.9652 -3.5308 -0.3397 11 8 2.8378 -3.6663 0.5000 12 6 1.4758 -4.6567 -1.0374 13 6 2.0608 -5.8707 -0.8637 14 6 1.5703 -6.9983 -1.5620 15 6 2.0736 -8.2710 -1.4719 16 6 1.4044 -9.1750 -2.2603 17 6 0.3893 -8.6667 -2.9728 18 35 -0.7075 -9.6705 -4.1412 19 16 0.2135 -6.9951 -2.6802 20 6 0.3419 -2.1565 -1.5284 21 6 0.4521 -2.8430 -2.8913 22 6 0.5712 -1.3211 -2.7896 23 1 -0.4850 0.8400 0.0004 24 1 0.6364 -4.5529 -1.7091 25 1 2.9003 -5.9744 -0.1923 26 1 2.9117 -8.5357 -0.8443 27 1 1.6764 -10.2194 -2.3030 28 1 -0.6441 -2.1100 -1.0662 29 1 1.3618 -3.4065 -3.0989 30 1 -0.4616 -3.2485 -3.3259 31 1 -0.2643 -0.7252 -3.1573 32 1 1.5591 -0.8826 -2.9302 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049425772.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:04 Heat of formation + Delta-G solvation = 58.390042 kcal Electronic energy + Delta-G solvation = -18660.419347 eV Core-core repulsion = 15567.972380 eV Total energy + Delta-G solvation = -3092.446967 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 340.983 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.23526 -37.94249 -36.27386 -34.02616 -33.11315 -31.38545 -31.31158 -28.15801 -25.66089 -24.18602 -22.51547 -21.74086 -21.20707 -19.45198 -18.60357 -17.24950 -16.58088 -16.25724 -15.39141 -15.26340 -14.45994 -14.27190 -13.76125 -13.54219 -13.08113 -13.02225 -12.85995 -12.57109 -12.13286 -11.81250 -11.39993 -11.30682 -11.24537 -10.98275 -10.71529 -10.60570 -10.48716 -10.39283 -10.05021 -9.71884 -9.61297 -9.08766 -8.57633 -8.45577 -7.99310 -7.69859 -6.70065 -3.89678 0.25979 1.08963 1.79049 1.94783 1.97141 2.91625 3.09260 3.14177 3.19136 3.93076 4.25835 4.43399 4.58033 4.97154 5.08219 5.31958 5.41494 5.50916 5.57823 5.72214 5.76106 5.86822 6.05011 6.11381 6.25104 6.35099 6.43808 6.66814 6.78401 6.81823 6.97274 7.30008 7.91512 8.26104 8.98460 9.18170 9.87493 10.33876 Molecular weight = 340.98amu Principal moments of inertia in cm(-1) A = 0.029115 B = 0.002783 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.464625 B =10060.113846 C =10810.023327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.301 4.301 8 H 0.112 0.888 9 N -0.390 5.390 10 C 0.446 3.554 11 O -0.602 6.602 12 C -0.141 4.141 13 C -0.085 4.085 14 C -0.118 4.118 15 C -0.153 4.153 16 C -0.084 4.084 17 C -0.269 4.269 18 Br -0.008 7.008 19 S 0.225 5.775 20 C 0.108 3.892 21 C -0.215 4.215 22 C -0.162 4.162 23 H 0.275 0.725 24 H 0.123 0.877 25 H 0.143 0.857 26 H 0.150 0.850 27 H 0.141 0.859 28 H 0.122 0.878 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.826 -14.436 -9.982 17.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.164 4.164 3 Si 0.739 3.261 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.429 4.429 8 H 0.129 0.871 9 N -0.104 5.104 10 C 0.242 3.758 11 O -0.491 6.491 12 C -0.166 4.166 13 C -0.109 4.109 14 C -0.238 4.238 15 C -0.182 4.182 16 C -0.119 4.119 17 C -0.466 4.466 18 Br 0.076 6.924 19 S 0.492 5.508 20 C 0.003 3.997 21 C -0.253 4.253 22 C -0.200 4.200 23 H 0.085 0.915 24 H 0.141 0.859 25 H 0.160 0.840 26 H 0.168 0.832 27 H 0.159 0.841 28 H 0.139 0.861 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.031 -13.608 -10.563 17.947 hybrid contribution 1.341 -0.081 0.649 1.492 sum -3.690 -13.690 -9.914 17.301 Atomic orbital electron populations 1.70052 1.06638 1.28701 1.40812 1.25314 0.95001 1.00142 0.95948 0.86092 0.80435 0.80859 0.78677 1.19911 1.20716 1.18861 1.19827 1.02956 0.85892 1.34184 0.87074 1.43409 1.26498 1.05955 1.34578 1.16424 0.88694 0.82849 0.87867 1.90687 1.35891 1.84896 1.37611 1.22729 1.00204 0.94280 0.99360 1.20399 1.01149 0.89613 0.99763 1.22941 1.00256 0.97999 1.02565 1.20697 1.03249 0.90970 1.03322 1.19895 0.94462 1.01352 0.96142 1.25432 1.07595 1.02121 1.11443 1.96636 1.64931 1.70635 1.60237 1.83227 1.29286 0.99778 1.38524 1.21467 0.92440 1.02275 0.83527 1.23602 1.02958 0.96614 1.02080 1.22959 1.02771 0.92216 1.02068 0.91508 0.85936 0.83979 0.83232 0.84127 0.86101 0.88831 0.88572 0.89159 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.25 11.57 55.50 0.64 -19.61 16 2 C 0.05 1.12 4.54 -17.45 -0.08 1.04 16 3 Si 0.91 19.07 29.65 -169.99 -5.04 14.03 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.30 -7.94 9.12 -15.05 -0.14 -8.08 16 8 H 0.11 3.12 7.47 -52.49 -0.39 2.73 16 9 N -0.39 -9.59 2.93 -111.07 -0.33 -9.91 16 10 C 0.45 10.92 7.31 -15.13 -0.11 10.81 16 11 O -0.60 -16.81 15.78 5.04 0.08 -16.73 16 12 C -0.14 -2.76 7.46 -39.30 -0.29 -3.05 16 13 C -0.08 -1.50 9.36 -39.22 -0.37 -1.86 16 14 C -0.12 -1.76 6.21 -38.77 -0.24 -2.00 16 15 C -0.15 -1.97 10.25 -40.29 -0.41 -2.38 16 16 C -0.08 -1.01 10.05 -41.38 -0.42 -1.43 16 17 C -0.27 -3.38 6.70 29.25 0.20 -3.18 16 18 Br -0.01 -0.09 34.04 -68.01 -2.31 -2.40 16 19 S 0.22 3.00 21.75 -107.50 -2.34 0.67 16 20 C 0.11 2.25 3.75 -67.93 -0.25 2.00 16 21 C -0.21 -3.57 7.80 -26.73 -0.21 -3.78 16 22 C -0.16 -2.99 9.62 -26.73 -0.26 -3.25 16 23 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 24 H 0.12 2.13 4.00 -52.48 -0.21 1.92 16 25 H 0.14 2.61 7.47 -52.49 -0.39 2.22 16 26 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 27 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 28 H 0.12 2.63 7.68 -51.93 -0.40 2.23 16 29 H 0.09 1.58 6.92 -51.93 -0.36 1.22 16 30 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 311.58 15.07 4.70 4.70 Total: -1.00 -28.20 311.58 -10.18 -38.39 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -3.00 Total: 6.04 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -2.58 Total: -15.16 kcal Atomic # 7 Polarization: -29.84 SS G_CDS: 0.32 Total: -29.52 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.08 Total: -16.73 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.04 Total: 14.03 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -2.34 Total: 0.67 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -2.31 Total: -2.40 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.20 -10.18 -38.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049425772.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.775 kcal (2) G-P(sol) polarization free energy of solvation -28.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds