Wall clock time and date at job start Tue Mar 31 2020 05:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46843 * 2 1 4 4 C 1.50697 * 109.47474 * 120.00021 * 2 1 3 5 5 H 1.07998 * 119.99940 * 114.58302 * 4 2 1 6 6 C 1.37880 * 119.99981 * 294.58619 * 4 2 1 7 7 N 1.31513 * 119.99983 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99861 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47049 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47049 * 120.00111 * 8 6 4 11 11 H 1.48507 * 109.47098 * 239.99680 * 8 6 4 12 12 N 1.46897 * 109.47140 * 240.00465 * 2 1 3 13 13 C 1.46905 * 110.99491 * 300.12834 * 12 2 1 14 14 C 1.53246 * 109.33765 * 187.25474 * 13 12 2 15 15 N 1.47081 * 108.51910 * 306.16866 * 14 13 12 16 16 C 1.34779 * 120.88125 * 231.18804 * 15 14 13 17 17 O 1.21574 * 119.99736 * 5.77161 * 16 15 14 18 18 C 1.47642 * 120.00079 * 185.77421 * 16 15 14 19 19 C 1.39695 * 120.13350 * 53.76785 * 18 16 15 20 20 C 1.37776 * 119.89643 * 179.97438 * 19 18 16 21 21 C 1.38722 * 120.15495 * 359.97438 * 20 19 18 22 22 F 1.35102 * 119.86753 * 180.02562 * 21 20 19 23 23 C 1.38557 * 120.26146 * 359.97438 * 21 20 19 24 24 C 1.38030 * 120.10823 * 0.02686 * 23 21 20 25 25 Cl 1.73598 * 120.08096 * 179.72156 * 24 23 21 26 26 C 1.47078 * 118.23787 * 51.45725 * 15 14 13 27 27 C 1.46898 * 111.00456 * 64.42476 * 12 2 1 28 28 H 1.08996 * 109.47346 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47047 * 299.99528 * 1 2 3 30 30 H 1.08994 * 109.47569 * 59.99677 * 1 2 3 31 31 H 0.97003 * 120.00260 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.49597 * 67.29302 * 13 12 2 33 33 H 1.09000 * 109.51345 * 307.22543 * 13 12 2 34 34 H 1.09001 * 109.62657 * 186.45966 * 14 13 12 35 35 H 1.09000 * 109.78873 * 65.97102 * 14 13 12 36 36 H 1.08000 * 120.05099 * 359.95997 * 19 18 16 37 37 H 1.08004 * 119.92468 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.94518 * 180.02562 * 23 21 20 39 39 H 1.09001 * 109.62566 * 68.25392 * 26 15 14 40 40 H 1.09003 * 109.62666 * 188.83337 * 26 15 14 41 41 H 1.09006 * 109.49430 * 292.71392 * 27 12 2 42 42 H 1.09001 * 109.48824 * 52.76290 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5793 -1.6366 1.1337 6 6 1.7939 -0.1778 2.4796 7 7 1.1283 0.9503 2.5974 8 14 2.4160 -1.0588 4.0048 9 1 3.1293 -2.2982 3.6042 10 1 3.3462 -0.1692 4.7455 11 1 1.2666 -1.4097 4.8773 12 7 2.0197 -0.6924 -1.1995 13 6 1.5461 -2.0825 -1.2349 14 6 2.2210 -2.8191 -2.3970 15 7 1.9928 -2.0526 -3.6314 16 6 1.5008 -2.6493 -4.7352 17 8 1.1412 -3.8097 -4.6898 18 6 1.3987 -1.8937 -5.9996 19 6 2.5210 -1.2468 -6.5225 20 6 2.4203 -0.5435 -7.7030 21 6 1.2076 -0.4770 -8.3732 22 9 1.1156 0.2138 -9.5306 23 6 0.0906 -1.1171 -7.8610 24 6 0.1792 -1.8246 -6.6791 25 17 -1.2224 -2.6203 -6.0342 26 6 2.3213 -0.6190 -3.6311 27 6 1.6370 0.0321 -2.4187 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 0.9608 1.3252 3.4762 32 1 0.4652 -2.0951 -1.3750 33 1 1.7970 -2.5767 -0.2964 34 1 1.7896 -3.8148 -2.4993 35 1 3.2916 -2.9013 -2.2098 36 1 3.4660 -1.2977 -6.0021 37 1 3.2876 -0.0428 -8.1075 38 1 -0.8509 -1.0622 -8.3872 39 1 3.4013 -0.4909 -3.5584 40 1 1.9563 -0.1595 -4.5497 41 1 0.5548 -0.0099 -2.5423 42 1 1.9538 1.0720 -2.3384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052110097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:54 Heat of formation + Delta-G solvation = -40.574658 kcal Electronic energy + Delta-G solvation = -27512.891203 eV Core-core repulsion = 23433.752165 eV Total energy + Delta-G solvation = -4079.139037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.41083 -40.62368 -38.86784 -37.66015 -36.75225 -34.99779 -32.59675 -31.77227 -31.32330 -30.45326 -29.20317 -26.09952 -25.30852 -24.11508 -23.67391 -22.98808 -21.66703 -20.23249 -18.90778 -18.16103 -17.49501 -17.01019 -16.45057 -16.11910 -15.92918 -15.29981 -15.16866 -14.90524 -14.56536 -14.39047 -14.32662 -13.97559 -13.84875 -13.50610 -13.40554 -13.12586 -12.73206 -12.60354 -12.08905 -11.81575 -11.72659 -11.55475 -11.29730 -11.22897 -11.18903 -10.93150 -10.78310 -10.70645 -10.42381 -10.12259 -9.92541 -9.79126 -9.46100 -9.11420 -8.95289 -8.52791 -8.45595 -7.28300 -6.07876 -4.10969 0.29870 0.56057 1.69300 2.47476 2.84845 3.13466 3.26944 3.35400 3.38989 3.70148 4.15615 4.23844 4.36611 4.40777 4.68807 4.77174 4.90327 5.15895 5.25501 5.26634 5.35909 5.36525 5.47300 5.53205 5.60948 5.63713 5.77908 5.93242 5.97136 6.15287 6.19787 6.36391 6.51740 6.60991 6.73686 6.76227 7.02761 7.37126 7.40480 7.58281 7.74262 8.01168 8.09595 8.25672 8.49202 8.94474 9.54319 11.00737 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020141 B = 0.002805 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.854019 B = 9979.182056 C =10243.093170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 H 0.045 0.955 4 C -0.503 4.503 5 H 0.064 0.936 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.529 5.529 13 C 0.048 3.952 14 C 0.115 3.885 15 N -0.597 5.597 16 C 0.557 3.443 17 O -0.524 6.524 18 C -0.123 4.123 19 C -0.047 4.047 20 C -0.152 4.152 21 C 0.129 3.871 22 F -0.129 7.129 23 C -0.152 4.152 24 C 0.030 3.970 25 Cl -0.031 7.031 26 C 0.109 3.891 27 C 0.039 3.961 28 H 0.030 0.970 29 H 0.079 0.921 30 H 0.009 0.991 31 H 0.260 0.740 32 H 0.030 0.970 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.032 0.968 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.075 -1.831 -21.058 21.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.106 3.894 3 H 0.063 0.937 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.253 5.253 13 C -0.081 4.081 14 C -0.007 4.007 15 N -0.330 5.330 16 C 0.344 3.656 17 O -0.401 6.401 18 C -0.127 4.127 19 C -0.066 4.066 20 C -0.171 4.171 21 C 0.109 3.891 22 F -0.108 7.108 23 C -0.172 4.172 24 C 0.002 3.998 25 Cl -0.002 7.002 26 C -0.014 4.014 27 C -0.091 4.091 28 H 0.049 0.951 29 H 0.097 0.903 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.168 0.832 37 H 0.167 0.833 38 H 0.170 0.830 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.050 0.950 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.203 -2.386 -20.822 20.992 hybrid contribution -0.839 -0.088 0.678 1.082 sum 0.365 -2.474 -20.143 20.298 Atomic orbital electron populations 1.22368 1.01025 0.99212 1.00105 1.19319 0.89520 0.94827 0.85731 0.93724 1.21122 1.34779 1.08434 0.89794 0.91816 1.24927 0.95202 0.94986 0.99045 1.69924 1.40594 1.19055 1.23623 0.86486 0.78510 0.79744 0.82938 1.19683 1.21053 1.21196 1.62338 1.59478 1.01285 1.02199 1.22364 0.96642 0.91068 0.98024 1.21943 1.01140 0.95462 0.82127 1.48150 1.62656 1.10507 1.11653 1.17969 0.78096 0.86585 0.82991 1.90812 1.48147 1.16648 1.84515 1.19950 0.93392 1.01766 0.97618 1.21161 0.98033 0.92913 0.94450 1.21188 0.97247 1.02364 0.96329 1.17629 0.94205 0.93882 0.83388 1.91551 1.96831 1.76654 1.45721 1.20929 0.99734 1.00158 0.96373 1.20617 0.88971 0.96297 0.93938 1.98439 1.38372 1.77883 1.85471 1.22145 1.00840 0.79475 0.98983 1.22454 0.97470 0.98332 0.90805 0.95118 0.90255 0.97210 0.93000 0.95165 0.88340 0.89311 0.90713 0.83215 0.83289 0.83042 0.90359 0.90367 0.94957 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 8.34 37.16 0.31 -3.57 16 2 C 0.21 4.99 2.25 -68.87 -0.16 4.84 16 3 H 0.04 1.17 8.08 -51.93 -0.42 0.75 16 4 C -0.50 -13.02 7.90 -34.44 -0.27 -13.29 16 5 H 0.06 1.64 6.51 -52.49 -0.34 1.30 16 6 C 0.06 1.59 5.32 -17.82 -0.09 1.50 16 7 N -0.89 -24.72 11.73 55.43 0.65 -24.07 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.53 -10.31 4.61 -227.43 -1.05 -11.36 16 13 C 0.05 0.88 4.79 -3.69 -0.02 0.86 16 14 C 0.12 1.78 6.61 -3.60 -0.02 1.76 16 15 N -0.60 -8.54 3.00 -173.37 -0.52 -9.06 16 16 C 0.56 8.14 6.60 -12.42 -0.08 8.06 16 17 O -0.52 -9.23 15.59 5.30 0.08 -9.15 16 18 C -0.12 -1.44 4.61 -104.94 -0.48 -1.93 16 19 C -0.05 -0.40 7.82 -39.21 -0.31 -0.71 16 20 C -0.15 -1.13 10.01 -39.57 -0.40 -1.53 16 21 C 0.13 1.10 7.30 -39.29 -0.29 0.82 16 22 F -0.13 -1.14 17.26 2.25 0.04 -1.10 16 23 C -0.15 -1.41 9.79 -39.54 -0.39 -1.79 16 24 C 0.03 0.34 6.34 -39.08 -0.25 0.09 16 25 Cl -0.03 -0.40 27.36 -51.86 -1.42 -1.82 16 26 C 0.11 1.37 5.70 -3.37 -0.02 1.36 16 27 C 0.04 0.63 5.14 -3.47 -0.02 0.61 16 28 H 0.03 0.69 6.57 -51.93 -0.34 0.35 16 29 H 0.08 2.04 6.51 -51.92 -0.34 1.70 16 30 H 0.01 0.19 6.67 -51.93 -0.35 -0.15 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.03 0.59 6.72 -51.93 -0.35 0.24 16 33 H 0.10 1.95 6.18 -51.93 -0.32 1.63 16 34 H 0.09 1.39 7.04 -51.93 -0.37 1.03 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.15 1.04 7.74 -52.49 -0.41 0.63 16 37 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 38 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.83 5.53 -51.93 -0.29 0.54 16 41 H 0.03 0.56 6.80 -51.93 -0.35 0.21 16 42 H 0.08 1.25 8.06 -51.93 -0.42 0.83 16 LS Contribution 352.06 15.07 5.31 5.31 Total: -1.00 -29.39 352.06 -9.53 -38.92 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -5.11 Total: -0.42 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.48 Total: -2.93 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.92 Total: -44.49 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.08 Total: -9.15 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.42 Total: -1.82 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.39 -9.53 -38.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052110097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.657 kcal (2) G-P(sol) polarization free energy of solvation -29.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds