Wall clock time and date at job start Tue Mar 31 2020 05:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47205 * 2 1 4 4 C 1.50703 * 109.46885 * 240.00254 * 2 1 3 5 5 H 1.08000 * 119.99901 * 240.00210 * 4 2 1 6 6 C 1.37876 * 119.99828 * 59.99724 * 4 2 1 7 7 N 1.31511 * 120.00185 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99594 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47160 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47458 * 120.00179 * 8 6 4 11 11 H 1.48500 * 109.46917 * 240.00305 * 8 6 4 12 12 N 1.46900 * 109.47225 * 120.00237 * 2 1 3 13 13 C 1.46899 * 110.99960 * 294.99835 * 12 2 1 14 14 C 1.53234 * 109.33873 * 187.25376 * 13 12 2 15 15 N 1.47082 * 108.52269 * 306.16999 * 14 13 12 16 16 C 1.34773 * 120.87867 * 231.18526 * 15 14 13 17 17 O 1.21575 * 120.00517 * 5.80045 * 16 15 14 18 18 C 1.47647 * 119.99652 * 185.79707 * 16 15 14 19 19 C 1.39698 * 120.13480 * 53.73269 * 18 16 15 20 20 C 1.37772 * 119.89943 * 179.97438 * 19 18 16 21 21 C 1.38721 * 120.15330 * 359.97438 * 20 19 18 22 22 F 1.35098 * 119.86959 * 179.97438 * 21 20 19 23 23 C 1.38565 * 120.26548 * 359.97438 * 21 20 19 24 24 C 1.38034 * 120.10034 * 0.02562 * 23 21 20 25 25 Cl 1.73605 * 120.07696 * 179.72338 * 24 23 21 26 26 C 1.47077 * 118.23494 * 51.45823 * 15 14 13 27 27 C 1.46896 * 110.99811 * 59.30047 * 12 2 1 28 28 H 1.09004 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46902 * 299.99667 * 1 2 3 30 30 H 1.09001 * 109.47629 * 59.99932 * 1 2 3 31 31 H 0.97001 * 119.99796 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.49061 * 67.29530 * 13 12 2 33 33 H 1.09004 * 109.51375 * 307.23090 * 13 12 2 34 34 H 1.08996 * 109.63024 * 186.45617 * 14 13 12 35 35 H 1.09003 * 109.62865 * 65.87771 * 14 13 12 36 36 H 1.08008 * 120.04903 * 359.95563 * 19 18 16 37 37 H 1.07997 * 119.92417 * 179.97438 * 20 19 18 38 38 H 1.07991 * 119.94934 * 180.02562 * 23 21 20 39 39 H 1.09003 * 109.63079 * 68.25621 * 26 15 14 40 40 H 1.09002 * 109.62432 * 188.83068 * 26 15 14 41 41 H 1.08999 * 109.49459 * 292.70423 * 27 12 2 42 42 H 1.08997 * 109.49567 * 52.76454 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3212 -1.1203 -4.0080 9 1 3.1463 -2.2870 -3.6039 10 1 1.1659 -1.5866 -4.8161 11 1 3.1464 -0.1873 -4.8165 12 7 2.0197 -0.6925 1.1994 13 6 1.6488 0.0391 2.4180 14 6 2.3278 -0.6123 3.6275 15 7 1.9934 -2.0446 3.6358 16 6 1.5019 -2.6336 4.7439 17 8 1.2304 -1.9618 5.7201 18 6 1.2932 -4.0950 4.7723 19 6 2.3425 -4.9597 4.4517 20 6 2.1425 -6.3225 4.4802 21 6 0.9021 -6.8376 4.8271 22 9 0.7122 -8.1749 4.8527 23 6 -0.1430 -5.9860 5.1473 24 6 0.0454 -4.6189 5.1222 25 17 -1.2664 -3.5523 5.5166 26 6 2.2152 -2.8181 2.4048 27 6 1.5351 -2.0786 1.2416 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.7087 1.1614 -3.4843 32 1 0.5669 0.0062 2.5469 33 1 1.9736 1.0761 2.3332 34 1 1.9672 -0.1467 4.5446 35 1 3.4082 -0.4891 3.5512 36 1 3.3090 -4.5604 4.1815 37 1 2.9533 -6.9913 4.2320 38 1 -1.1065 -6.3926 5.4170 39 1 3.2849 -2.9028 2.2133 40 1 1.7800 -3.8116 2.5132 41 1 0.4548 -2.0820 1.3869 42 1 1.7775 -2.5775 0.3034 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052110099.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:57 Heat of formation + Delta-G solvation = -40.052932 kcal Electronic energy + Delta-G solvation = -27610.489031 eV Core-core repulsion = 23531.372617 eV Total energy + Delta-G solvation = -4079.116414 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.38113 -40.61057 -38.85268 -37.65627 -36.73218 -34.98681 -32.68475 -31.71486 -31.29493 -30.41957 -29.17235 -26.08539 -25.35523 -23.96401 -23.68660 -23.06877 -21.63066 -20.21593 -18.89856 -18.13627 -17.48395 -17.00912 -16.27665 -16.17763 -16.00336 -15.26607 -15.17227 -14.90576 -14.53352 -14.42490 -14.19887 -14.00226 -13.92654 -13.47682 -13.38552 -13.10138 -12.73553 -12.59545 -11.95493 -11.79613 -11.77454 -11.51104 -11.33735 -11.22858 -11.19825 -10.98844 -10.77452 -10.63142 -10.39529 -10.09508 -9.95836 -9.81972 -9.42875 -9.09316 -8.95855 -8.53306 -8.45235 -7.27733 -6.07742 -4.12399 0.32633 0.59169 1.71207 2.48456 2.85811 3.15301 3.25225 3.33790 3.36508 3.73180 4.18270 4.26366 4.34866 4.43942 4.71684 4.79086 4.93175 5.20170 5.24388 5.30413 5.37557 5.39249 5.49892 5.58643 5.63026 5.63862 5.72694 5.85154 5.99009 6.18112 6.28554 6.42695 6.46357 6.59621 6.71992 6.80204 7.05035 7.36477 7.42944 7.63567 7.74096 8.01429 8.09490 8.28352 8.48572 8.93055 9.53233 10.99281 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.003262 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.451949 B = 8581.008006 C = 9488.891410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.212 3.788 3 H 0.041 0.959 4 C -0.503 4.503 5 H 0.064 0.936 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.529 5.529 13 C 0.039 3.961 14 C 0.119 3.881 15 N -0.597 5.597 16 C 0.558 3.442 17 O -0.526 6.526 18 C -0.123 4.123 19 C -0.046 4.046 20 C -0.152 4.152 21 C 0.129 3.871 22 F -0.129 7.129 23 C -0.152 4.152 24 C 0.030 3.970 25 Cl -0.032 7.032 26 C 0.105 3.895 27 C 0.049 3.951 28 H 0.028 0.972 29 H 0.007 0.993 30 H 0.088 0.912 31 H 0.260 0.740 32 H 0.032 0.968 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.031 0.969 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.848 -13.121 14.584 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.106 3.894 3 H 0.059 0.941 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.254 5.254 13 C -0.090 4.090 14 C -0.003 4.003 15 N -0.330 5.330 16 C 0.345 3.655 17 O -0.403 6.403 18 C -0.127 4.127 19 C -0.065 4.065 20 C -0.171 4.171 21 C 0.109 3.891 22 F -0.107 7.107 23 C -0.172 4.172 24 C 0.002 3.998 25 Cl -0.003 7.003 26 C -0.018 4.018 27 C -0.081 4.081 28 H 0.047 0.953 29 H 0.026 0.974 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.168 0.832 37 H 0.167 0.833 38 H 0.170 0.830 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.049 0.951 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.017 -12.581 14.961 19.574 hybrid contribution -0.869 -0.597 -0.956 1.423 sum 0.148 -13.178 14.005 19.231 Atomic orbital electron populations 1.22399 1.00782 0.99268 1.00603 1.19313 0.89766 0.94618 0.85708 0.94077 1.21119 1.30777 1.12593 0.89626 0.91832 1.24927 0.95135 0.95077 0.99042 1.69891 1.36873 1.22973 1.23398 0.86481 0.78535 0.79662 0.82954 1.19720 1.21188 1.21046 1.62316 1.59463 1.01183 1.02392 1.22388 0.97700 0.98297 0.90635 1.21825 1.00220 0.78962 0.99323 1.48145 1.62610 1.10800 1.11395 1.17968 0.77841 0.86353 0.83372 1.90805 1.50634 1.64240 1.34666 1.19927 0.93559 0.94971 1.04292 1.21161 0.98672 0.91793 0.94863 1.21188 0.96606 0.96168 1.03141 1.17631 0.94135 0.77360 0.99937 1.91549 1.95739 1.29712 1.93750 1.20926 1.00464 0.91120 1.04689 1.20606 0.89553 0.90729 0.98882 1.98436 1.45801 1.64323 1.91698 1.22265 1.01576 0.94468 0.83503 1.22412 0.96456 0.91467 0.97716 0.95303 0.97353 0.89318 0.92988 0.94970 0.90149 0.89284 0.90698 0.83208 0.83279 0.83041 0.90395 0.90363 0.95126 0.88362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 8.29 37.16 0.31 -3.69 16 2 C 0.21 5.00 2.35 -68.86 -0.16 4.84 16 3 H 0.04 1.08 8.07 -51.93 -0.42 0.66 16 4 C -0.50 -12.86 7.84 -34.44 -0.27 -13.13 16 5 H 0.06 1.61 6.77 -52.49 -0.36 1.25 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.89 -24.53 11.32 55.43 0.63 -23.90 16 8 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.53 -10.35 4.61 -227.44 -1.05 -11.39 16 13 C 0.04 0.67 5.14 -3.70 -0.02 0.65 16 14 C 0.12 1.75 6.61 -3.60 -0.02 1.73 16 15 N -0.60 -8.57 3.00 -173.37 -0.52 -9.09 16 16 C 0.56 8.19 6.60 -12.42 -0.08 8.11 16 17 O -0.53 -9.18 15.59 5.30 0.08 -9.09 16 18 C -0.12 -1.49 4.61 -104.94 -0.48 -1.97 16 19 C -0.05 -0.42 7.82 -39.21 -0.31 -0.73 16 20 C -0.15 -1.20 10.01 -39.57 -0.40 -1.60 16 21 C 0.13 1.17 7.30 -39.28 -0.29 0.88 16 22 F -0.13 -1.20 17.26 2.25 0.04 -1.16 16 23 C -0.15 -1.47 9.79 -39.54 -0.39 -1.85 16 24 C 0.03 0.36 6.34 -39.08 -0.25 0.11 16 25 Cl -0.03 -0.42 27.35 -51.86 -1.42 -1.83 16 26 C 0.10 1.41 5.70 -3.36 -0.02 1.39 16 27 C 0.05 0.85 4.79 -3.46 -0.02 0.83 16 28 H 0.03 0.65 6.56 -51.93 -0.34 0.31 16 29 H 0.01 0.17 6.69 -51.93 -0.35 -0.18 16 30 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.03 0.60 6.81 -51.93 -0.35 0.24 16 33 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 34 H 0.09 1.32 7.04 -51.93 -0.37 0.95 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.15 1.10 7.74 -52.48 -0.41 0.70 16 37 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 0.91 5.53 -51.93 -0.29 0.62 16 41 H 0.03 0.57 6.71 -51.93 -0.35 0.23 16 42 H 0.10 1.84 6.31 -51.93 -0.33 1.51 16 LS Contribution 351.54 15.07 5.30 5.30 Total: -1.00 -29.07 351.54 -9.56 -38.63 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.11 Total: 0.12 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -2.49 Total: -2.96 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: -0.94 Total: -44.39 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.42 Total: -1.83 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.07 -9.56 -38.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052110099.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.422 kcal (2) G-P(sol) polarization free energy of solvation -29.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds