Wall clock time and date at job start Tue Mar 31 2020 05:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86796 * 119.99870 * 2 1 4 4 H 1.48500 * 109.46906 * 239.99811 * 3 2 1 5 5 H 1.48490 * 109.47742 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.47068 * 120.00057 * 3 2 1 7 7 C 1.38947 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00263 * 181.49623 * 7 2 1 9 9 N 1.37102 * 120.00134 * 1.50060 * 7 2 1 10 10 C 1.46497 * 119.99834 * 314.72265 * 9 7 2 11 11 C 1.50710 * 109.46949 * 269.99601 * 10 9 7 12 12 C 1.38232 * 119.99855 * 269.72828 * 11 10 9 13 13 C 1.38240 * 119.99637 * 179.76544 * 12 11 10 14 14 C 1.38231 * 119.99783 * 0.50683 * 13 12 11 15 15 C 1.38240 * 120.00360 * 359.74504 * 14 13 12 16 16 C 1.38231 * 119.99703 * 90.00057 * 11 10 9 17 17 C 1.34779 * 120.00167 * 134.71708 * 9 7 2 18 18 O 1.21289 * 120.00214 * 185.78700 * 17 9 7 19 19 C 1.50699 * 119.99688 * 5.79013 * 17 9 7 20 20 C 1.50705 * 109.46971 * 184.53801 * 19 17 9 21 21 C 1.38260 * 119.99637 * 100.42044 * 20 19 17 22 22 C 1.38214 * 119.99488 * 180.27504 * 21 20 19 23 23 C 1.38259 * 120.00098 * 359.49566 * 22 21 20 24 24 C 1.38212 * 120.00005 * 0.48595 * 23 22 21 25 25 C 1.38207 * 120.00065 * 280.44635 * 20 19 17 26 26 N 1.48022 * 120.00088 * 359.97438 * 25 20 19 27 27 O 1.21797 * 119.99948 * 185.48065 * 26 25 20 28 28 O 1.21800 * 119.99686 * 5.47801 * 26 25 20 29 29 H 0.97006 * 119.99993 * 5.00762 * 1 2 3 30 30 H 1.08994 * 109.47535 * 29.99387 * 10 9 7 31 31 H 1.09000 * 109.47428 * 149.99782 * 10 9 7 32 32 H 1.07998 * 120.00279 * 359.97438 * 12 11 10 33 33 H 1.08000 * 119.99979 * 180.23142 * 13 12 11 34 34 H 1.08005 * 119.99614 * 179.72925 * 14 13 12 35 35 H 1.07996 * 120.00144 * 179.97438 * 15 14 13 36 36 H 1.08000 * 120.00547 * 0.02562 * 16 11 10 37 37 H 1.09003 * 109.47429 * 64.53826 * 19 17 9 38 38 H 1.09000 * 109.47297 * 304.53794 * 19 17 9 39 39 H 1.07997 * 120.00618 * 0.02562 * 21 20 19 40 40 H 1.07997 * 120.00018 * 179.72651 * 22 21 20 41 41 H 1.08001 * 119.99859 * 180.25497 * 23 22 21 42 42 H 1.07999 * 119.99951 * 179.76787 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0088 -1.2033 0.0005 8 1 3.0885 -1.2036 0.0250 9 7 1.3237 -2.3905 -0.0300 10 6 0.1641 -2.5896 0.8429 11 6 0.6181 -3.1755 2.1552 12 6 0.6770 -4.5472 2.3161 13 6 1.0980 -5.0846 3.5182 14 6 1.4500 -4.2503 4.5626 15 6 1.3860 -2.8786 4.4034 16 6 0.9700 -2.3413 3.1996 17 6 1.7168 -3.3742 -0.8632 18 8 1.0512 -4.3828 -0.9675 19 6 2.9834 -3.2210 -1.6652 20 6 3.1368 -4.3995 -2.5919 21 6 2.7946 -4.2789 -3.9261 22 6 2.9299 -5.3614 -4.7747 23 6 3.4173 -6.5617 -4.2918 24 6 3.7598 -6.6822 -2.9582 25 6 3.6191 -5.6010 -2.1081 26 7 3.9854 -5.7301 -0.6797 27 8 4.5032 -6.7552 -0.2741 28 8 3.7692 -4.8111 0.0899 29 1 -0.4850 0.8369 -0.0733 30 1 -0.3244 -1.6320 1.0223 31 1 -0.5383 -3.2718 0.3641 32 1 0.3974 -5.1990 1.5017 33 1 1.1476 -6.1562 3.6428 34 1 1.7747 -4.6702 5.5032 35 1 1.6606 -2.2268 5.2196 36 1 0.9194 -1.2696 3.0755 37 1 3.8379 -3.1762 -0.9899 38 1 2.9342 -2.3027 -2.2503 39 1 2.4177 -3.3401 -4.3042 40 1 2.6584 -5.2685 -5.8159 41 1 3.5269 -7.4063 -4.9559 42 1 4.1370 -7.6209 -2.5802 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054246673.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:23 Heat of formation + Delta-G solvation = 23.746262 kcal Electronic energy + Delta-G solvation = -30096.061142 eV Core-core repulsion = 26009.771330 eV Total energy + Delta-G solvation = -4086.289813 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.81260 -39.50937 -38.78703 -37.78881 -36.13323 -34.85845 -32.77157 -31.81333 -31.70848 -30.66988 -30.11738 -27.96088 -26.03327 -25.52958 -24.23133 -22.47432 -21.91184 -21.76066 -20.52771 -19.24963 -18.68377 -18.12594 -17.24521 -16.94972 -16.17901 -16.01506 -15.61284 -15.51261 -14.79629 -14.59890 -14.40400 -14.24341 -14.09010 -13.74851 -13.15633 -13.09726 -12.65932 -12.59269 -12.30817 -12.13100 -11.87656 -11.59325 -11.42316 -11.34186 -11.20078 -10.98845 -10.93251 -10.67963 -10.60814 -10.45758 -10.26056 -10.15701 -10.04679 -9.43756 -9.20399 -9.05947 -8.57211 -8.15866 -7.92559 -7.46796 -6.35911 -4.22799 0.19441 1.08120 1.68128 1.87429 2.11199 2.17122 3.09482 3.17283 3.18338 3.42675 3.87704 4.07045 4.43601 4.53549 4.58483 4.73055 4.95045 4.97850 5.05672 5.14284 5.32762 5.57519 5.62829 5.65495 5.73250 5.77934 5.91688 6.02231 6.11670 6.16187 6.26657 6.30497 6.34320 6.38716 6.45886 6.62944 6.77963 6.89386 6.92652 7.19535 7.21508 7.26528 7.49408 7.65285 7.79192 8.01107 8.12483 8.36694 9.02195 9.44571 9.89512 10.61972 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009459 B = 0.005385 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.589504 B = 5198.042008 C = 7196.591603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.047 3.953 3 Si 0.916 3.084 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.329 4.329 8 H 0.086 0.914 9 N -0.430 5.430 10 C 0.136 3.864 11 C -0.074 4.074 12 C -0.101 4.101 13 C -0.129 4.129 14 C -0.134 4.134 15 C -0.133 4.133 16 C -0.095 4.095 17 C 0.506 3.494 18 O -0.604 6.604 19 C -0.107 4.107 20 C 0.023 3.977 21 C -0.116 4.116 22 C -0.070 4.070 23 C -0.133 4.133 24 C -0.059 4.059 25 C -0.029 4.029 26 N 0.034 4.966 27 O -0.192 6.192 28 O -0.131 6.131 29 H 0.272 0.728 30 H 0.132 0.868 31 H 0.058 0.942 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.903 -5.969 -5.220 9.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.157 4.157 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.457 4.457 8 H 0.104 0.896 9 N -0.147 5.147 10 C 0.014 3.986 11 C -0.076 4.076 12 C -0.120 4.120 13 C -0.148 4.148 14 C -0.153 4.153 15 C -0.151 4.151 16 C -0.113 4.113 17 C 0.295 3.705 18 O -0.491 6.491 19 C -0.147 4.147 20 C 0.021 3.979 21 C -0.134 4.134 22 C -0.088 4.088 23 C -0.151 4.151 24 C -0.078 4.078 25 C -0.113 4.113 26 N 0.552 4.448 27 O -0.399 6.399 28 O -0.352 6.352 29 H 0.083 0.917 30 H 0.149 0.851 31 H 0.077 0.923 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.139 0.861 37 H 0.133 0.867 38 H 0.122 0.878 39 H 0.162 0.838 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.238 -6.277 -5.875 9.586 hybrid contribution 0.624 0.805 0.447 1.112 sum 4.863 -5.473 -5.428 9.114 Atomic orbital electron populations 1.69542 1.06043 1.28012 1.47281 1.25500 0.95372 0.99608 0.95269 0.86171 0.79222 0.81165 0.79226 1.19758 1.20837 1.19615 1.19442 0.91588 0.82309 1.52373 0.89612 1.43162 1.27261 1.12616 1.31681 1.20761 0.89088 1.03316 0.85463 1.20619 0.97340 0.93018 0.96596 1.21173 0.98870 0.95269 0.96691 1.20998 1.00894 0.98912 0.93953 1.20925 1.02057 0.93814 0.98462 1.21026 1.01554 0.94920 0.97604 1.21091 0.97878 0.99957 0.92415 1.19699 0.85827 0.84424 0.80565 1.90521 1.57446 1.31619 1.69473 1.20921 1.00924 0.95019 0.97816 1.19680 0.90015 0.93223 0.95007 1.21174 1.00235 1.00447 0.91587 1.21513 0.94559 0.92411 1.00355 1.21067 1.01159 0.98677 0.94233 1.20954 0.96194 0.97558 0.93132 1.20902 1.11349 0.97769 0.81252 1.43512 0.98069 1.00013 1.03239 1.94456 1.44659 1.19345 1.81489 1.94598 1.56401 1.31684 1.52532 0.91739 0.85093 0.92335 0.86568 0.87263 0.87280 0.87099 0.86133 0.86744 0.87794 0.83750 0.84428 0.84185 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.67 10.80 55.50 0.60 -21.07 16 2 C 0.05 1.12 5.37 -17.47 -0.09 1.03 16 3 Si 0.92 18.56 29.56 -169.99 -5.02 13.54 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.33 -7.93 8.39 -14.93 -0.13 -8.06 16 8 H 0.09 2.01 7.41 -52.49 -0.39 1.62 16 9 N -0.43 -10.49 2.50 -116.10 -0.29 -10.78 16 10 C 0.14 3.28 5.17 -5.19 -0.03 3.25 16 11 C -0.07 -1.65 5.46 -104.62 -0.57 -2.22 16 12 C -0.10 -2.16 9.70 -39.58 -0.38 -2.55 16 13 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 14 C -0.13 -2.33 10.05 -39.58 -0.40 -2.72 16 15 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 16 C -0.09 -1.95 9.70 -39.59 -0.38 -2.33 16 17 C 0.51 11.91 6.05 -10.99 -0.07 11.85 16 18 O -0.60 -15.43 15.23 5.53 0.08 -15.35 16 19 C -0.11 -2.10 3.85 -29.03 -0.11 -2.21 16 20 C 0.02 0.39 4.48 -104.62 -0.47 -0.08 16 21 C -0.12 -1.58 9.67 -39.58 -0.38 -1.96 16 22 C -0.07 -0.75 10.05 -39.58 -0.40 -1.15 16 23 C -0.13 -1.41 10.05 -39.58 -0.40 -1.81 16 24 C -0.06 -0.81 9.56 -39.58 -0.38 -1.19 16 25 C -0.03 -0.51 6.61 -79.95 -0.53 -1.04 16 26 N 0.03 0.69 4.45 33.96 0.15 0.84 16 27 O -0.19 -3.76 18.46 -29.46 -0.54 -4.30 16 28 O -0.13 -2.90 14.19 -30.43 -0.43 -3.33 16 29 H 0.27 6.44 8.32 -40.82 -0.34 6.10 16 30 H 0.13 3.30 5.17 -51.93 -0.27 3.04 16 31 H 0.06 1.46 7.29 -51.93 -0.38 1.08 16 32 H 0.12 2.61 7.90 -52.49 -0.41 2.20 16 33 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 35 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.12 2.51 8.06 -52.49 -0.42 2.08 16 37 H 0.11 2.27 6.02 -51.93 -0.31 1.96 16 38 H 0.10 1.87 7.74 -51.93 -0.40 1.47 16 39 H 0.14 1.72 8.03 -52.49 -0.42 1.30 16 40 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.15 1.75 7.62 -52.49 -0.40 1.35 16 LS Contribution 364.60 15.07 5.49 5.49 Total: -1.00 -30.01 364.60 -10.13 -40.14 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -4.66 Total: 11.61 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -5.51 Total: -16.79 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.46 Total: -31.01 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.89 Total: -22.98 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.54 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.01 -10.13 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054246673.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.887 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds