Wall clock time and date at job start Tue Mar 31 2020 06:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46783 * 2 1 4 4 C 1.50702 * 109.46894 * 119.99475 * 2 1 3 5 5 H 1.08007 * 119.99987 * 114.30291 * 4 2 1 6 6 C 1.37880 * 120.00047 * 294.29869 * 4 2 1 7 7 N 1.31516 * 119.99821 * 157.45421 * 6 4 2 8 8 Si 1.86800 * 120.00249 * 337.73257 * 6 4 2 9 9 H 1.48496 * 109.46923 * 269.72580 * 8 6 4 10 10 H 1.48498 * 109.46775 * 29.72214 * 8 6 4 11 11 H 1.48496 * 109.47036 * 149.71850 * 8 6 4 12 12 N 1.46891 * 109.47499 * 239.99344 * 2 1 3 13 13 C 1.46897 * 111.00423 * 183.95364 * 12 2 1 14 14 C 1.46908 * 110.99774 * 60.00101 * 12 2 1 15 15 C 1.53004 * 109.47190 * 189.99971 * 14 12 2 16 16 C 1.52994 * 109.47171 * 180.02562 * 15 14 12 17 17 O 1.42895 * 109.47425 * 180.02562 * 16 15 14 18 18 C 1.35895 * 117.00339 * 179.97438 * 17 16 15 19 19 C 1.38753 * 120.05713 * 359.72191 * 18 17 16 20 20 C 1.38125 * 119.94765 * 179.70044 * 19 18 17 21 21 C 1.38291 * 120.05146 * 0.59504 * 20 19 18 22 22 C 1.38249 * 120.11109 * 359.67836 * 21 20 19 23 23 S 1.76201 * 119.97126 * 179.97438 * 22 21 20 24 24 C 1.81401 * 104.45054 * 270.02728 * 23 22 21 25 25 O 1.42109 * 104.27251 * 26.09670 * 23 22 21 26 26 O 1.42093 * 104.27810 * 153.95163 * 23 22 21 27 27 C 1.38162 * 120.05667 * 0.02580 * 22 21 20 28 28 H 1.08992 * 109.46953 * 51.61292 * 1 2 3 29 29 H 1.09002 * 109.46507 * 171.60971 * 1 2 3 30 30 H 1.08996 * 109.47152 * 291.60966 * 1 2 3 31 31 H 0.97004 * 120.00081 * 355.23535 * 7 6 4 32 32 H 1.09000 * 109.47191 * 60.00159 * 13 12 2 33 33 H 1.08998 * 109.47566 * 180.02562 * 13 12 2 34 34 H 1.09005 * 109.46960 * 300.00328 * 13 12 2 35 35 H 1.09003 * 109.46865 * 310.00043 * 14 12 2 36 36 H 1.08996 * 109.47206 * 69.99851 * 14 12 2 37 37 H 1.09000 * 109.46666 * 300.00248 * 15 14 12 38 38 H 1.09005 * 109.47136 * 60.00039 * 15 14 12 39 39 H 1.09003 * 109.46814 * 300.00029 * 16 15 14 40 40 H 1.08996 * 109.47276 * 59.99849 * 16 15 14 41 41 H 1.08003 * 120.02316 * 359.97438 * 19 18 17 42 42 H 1.07994 * 119.97618 * 180.30174 * 20 19 18 43 43 H 1.08002 * 119.94463 * 179.70061 * 21 20 19 44 44 H 1.08997 * 109.47325 * 60.00331 * 24 23 22 45 45 H 1.09003 * 109.46515 * 179.97438 * 24 23 22 46 46 H 1.08991 * 109.46693 * 299.99610 * 24 23 22 47 47 H 1.07996 * 120.02843 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.5753 -1.6390 1.1342 6 6 1.7988 -0.1746 2.4794 7 7 1.8199 -0.9496 3.5418 8 14 1.4449 1.6505 2.6616 9 1 2.7199 2.3840 2.8649 10 1 0.7769 2.1501 1.4330 11 1 0.5565 1.8680 3.8314 12 7 2.0198 -0.6926 -1.1993 13 6 3.4851 -0.7946 -1.1869 14 6 1.5488 -0.0265 -2.4210 15 6 1.8628 -0.9046 -3.6341 16 6 1.3729 -0.2106 -4.9065 17 8 1.6657 -1.0309 -6.0394 18 6 1.2926 -0.5570 -7.2572 19 6 0.6525 0.6698 -7.3592 20 6 0.2799 1.1521 -8.5987 21 6 0.5333 0.4077 -9.7363 22 6 1.1658 -0.8176 -9.6367 23 16 1.4863 -1.7633 -11.0885 24 6 0.0092 -2.7967 -11.2907 25 8 1.5641 -0.7960 -12.1267 26 8 2.6104 -2.5618 -10.7455 27 6 1.5460 -1.3016 -8.3998 28 1 -0.3633 0.6381 -0.8055 29 1 -0.3632 -1.0167 -0.1500 30 1 -0.3633 0.3785 0.9554 31 1 1.9308 -1.9079 3.4409 32 1 3.8030 -1.3532 -0.3065 33 1 3.8211 -1.3110 -2.0860 34 1 3.9187 0.2051 -1.1590 35 1 0.4723 0.1322 -2.3563 36 1 2.0519 0.9344 -2.5280 37 1 2.9393 -1.0633 -3.6986 38 1 1.3596 -1.8656 -3.5271 39 1 0.2965 -0.0515 -4.8421 40 1 1.8764 0.7501 -5.0133 41 1 0.4498 1.2491 -6.4706 42 1 -0.2140 2.1091 -8.6791 43 1 0.2368 0.7843 -10.7041 44 1 -0.8674 -2.1591 -11.4058 45 1 0.1219 -3.4221 -12.1764 46 1 -0.1145 -3.4295 -10.4120 47 1 2.0405 -2.2586 -8.3226 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057909545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:05 Heat of formation + Delta-G solvation = -71.958285 kcal Electronic energy + Delta-G solvation = -26710.976123 eV Core-core repulsion = 22794.094633 eV Total energy + Delta-G solvation = -3916.881490 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.53883 -38.13048 -37.52995 -37.33274 -36.35710 -33.58048 -32.10635 -31.74860 -30.37555 -29.97514 -29.65192 -26.72736 -24.58551 -24.25293 -23.29365 -22.69543 -20.93172 -19.73462 -19.23393 -18.67520 -17.49672 -16.75434 -16.70469 -16.62624 -16.50630 -16.39421 -15.75088 -15.20806 -14.56743 -14.35077 -14.08541 -13.86994 -13.74631 -13.65950 -13.55648 -13.38720 -12.95809 -12.72671 -12.50861 -12.46780 -12.42492 -12.16704 -11.87599 -11.67428 -11.60085 -11.51365 -11.31603 -11.14141 -10.97639 -10.87026 -10.74757 -10.40332 -10.33209 -10.10733 -9.82823 -9.79812 -8.90428 -8.68943 -8.27437 -7.40297 -6.49801 -4.06423 -0.42286 0.35715 0.91844 2.37162 2.83843 2.99312 3.36580 3.38873 3.49510 3.54315 3.69285 4.26083 4.26667 4.40977 4.46609 4.50896 4.60892 4.65541 4.78122 4.80016 4.99278 5.04052 5.12416 5.19013 5.24020 5.33197 5.43730 5.55014 5.58033 5.76199 5.80872 5.85510 6.00517 6.12060 6.17218 6.22921 6.33003 6.39969 6.55096 6.58812 6.81259 6.89601 7.04675 7.28202 7.71510 7.96061 8.30134 8.41325 8.95842 9.58618 10.88854 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.030425 B = 0.001726 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.085044 B =16220.438862 C =16650.018846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.189 3.811 3 H -0.008 1.008 4 C -0.597 4.597 5 H 0.065 0.935 6 C 0.035 3.965 7 N -0.899 5.899 8 Si 1.038 2.962 9 H -0.287 1.287 10 H -0.278 1.278 11 H -0.285 1.285 12 N -0.529 5.529 13 C 0.037 3.963 14 C 0.052 3.948 15 C -0.115 4.115 16 C 0.059 3.941 17 O -0.309 6.309 18 C 0.119 3.881 19 C -0.157 4.157 20 C -0.098 4.098 21 C -0.069 4.069 22 C -0.623 4.623 23 S 2.502 3.498 24 C -0.649 4.649 25 O -0.937 6.937 26 O -0.934 6.934 27 C -0.060 4.060 28 H 0.019 0.981 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.270 0.730 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.012 0.988 35 H 0.074 0.926 36 H 0.023 0.977 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.142 0.858 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 1.210 -30.405 31.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.082 3.918 3 H 0.009 0.991 4 C -0.635 4.635 5 H 0.083 0.917 6 C -0.171 4.171 7 N -0.533 5.533 8 Si 0.866 3.134 9 H -0.213 1.213 10 H -0.204 1.204 11 H -0.211 1.211 12 N -0.253 5.253 13 C -0.112 4.112 14 C -0.076 4.076 15 C -0.153 4.153 16 C -0.016 4.016 17 O -0.222 6.222 18 C 0.072 3.928 19 C -0.176 4.176 20 C -0.117 4.117 21 C -0.089 4.089 22 C -0.709 4.709 23 S 2.681 3.319 24 C -0.799 4.799 25 O -0.934 6.934 26 O -0.931 6.931 27 C -0.080 4.080 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.093 0.907 36 H 0.042 0.958 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.160 0.840 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.153 0.847 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.706 1.776 -29.678 30.273 hybrid contribution -0.211 0.005 -0.345 0.405 sum -5.917 1.781 -30.023 30.652 Atomic orbital electron populations 1.22124 0.98339 1.00073 0.98832 1.19644 0.91724 0.92096 0.88341 0.99059 1.21912 1.40597 1.10647 0.90324 0.91685 1.25641 0.93749 1.05580 0.92149 1.70805 1.44128 1.06551 1.31779 0.84100 0.77198 0.76286 0.75789 1.21337 1.20357 1.21133 1.61987 1.09938 1.52085 1.01306 1.22253 0.88085 0.99256 1.01568 1.22000 1.00905 0.94355 0.90380 1.21575 1.02632 1.00545 0.90499 1.22955 1.00480 0.94014 0.84142 1.86123 1.76703 1.46885 1.12483 1.19081 0.94895 0.92806 0.85988 1.21687 1.00406 0.95878 0.99628 1.21112 0.98974 0.99934 0.91658 1.20832 0.95836 0.92488 0.99695 1.30425 1.13511 1.10486 1.16491 1.05167 0.76914 0.75571 0.74246 1.30212 1.21305 1.16203 1.12180 1.93592 1.86188 1.59022 1.54586 1.93608 1.45813 1.70376 1.83305 1.20172 0.98561 1.00579 0.88661 0.96189 0.92904 0.93203 0.91974 0.90280 0.93406 0.96952 0.90716 0.95845 0.90776 0.89970 0.91745 0.91976 0.84450 0.84689 0.83997 0.84892 0.84875 0.84748 0.83205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.17 37.16 0.30 -2.62 16 2 C 0.19 4.42 1.61 -68.87 -0.11 4.31 16 3 H -0.01 -0.19 6.50 -51.93 -0.34 -0.53 16 4 C -0.60 -16.33 8.01 -34.44 -0.28 -16.61 16 5 H 0.07 1.93 6.88 -52.48 -0.36 1.57 16 6 C 0.03 0.98 5.19 -17.82 -0.09 0.89 16 7 N -0.90 -27.07 13.70 55.43 0.76 -26.31 16 8 Si 1.04 24.68 26.39 -169.99 -4.49 20.19 16 9 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.11 6.02 56.52 0.34 -5.77 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.53 -10.76 4.62 -236.28 -1.09 -11.85 16 13 C 0.04 0.70 9.05 60.06 0.54 1.25 16 14 C 0.05 0.84 4.77 -3.82 -0.02 0.82 16 15 C -0.11 -1.53 5.51 -26.73 -0.15 -1.68 16 16 C 0.06 0.65 4.74 37.15 0.18 0.82 16 17 O -0.31 -3.71 10.14 -19.41 -0.20 -3.91 16 18 C 0.12 1.28 6.69 -39.22 -0.26 1.02 16 19 C -0.16 -1.40 9.04 -39.43 -0.36 -1.76 16 20 C -0.10 -0.74 10.04 -39.60 -0.40 -1.14 16 21 C -0.07 -0.53 9.47 -39.56 -0.37 -0.90 16 22 C -0.62 -5.11 5.65 -39.61 -0.22 -5.34 16 23 S 2.50 16.95 5.80 -107.50 -0.62 16.33 16 24 C -0.65 -1.68 10.80 101.05 1.09 -0.59 16 25 O -0.94 -8.96 17.12 -57.54 -0.99 -9.95 16 26 O -0.93 -9.71 17.12 -57.54 -0.99 -10.70 16 27 C -0.06 -0.59 9.41 -39.43 -0.37 -0.96 16 28 H 0.02 0.36 6.66 -51.93 -0.35 0.01 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 1.11 5.84 -51.93 -0.30 0.81 16 31 H 0.27 8.13 8.73 -40.82 -0.36 7.77 16 32 H 0.08 1.69 6.34 -51.93 -0.33 1.37 16 33 H 0.05 0.78 6.30 -51.93 -0.33 0.45 16 34 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 1.16 6.01 -51.93 -0.31 0.84 16 36 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 37 H 0.07 1.01 6.47 -51.93 -0.34 0.68 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 40 H 0.06 0.61 7.68 -51.93 -0.40 0.21 16 41 H 0.14 1.02 6.30 -52.48 -0.33 0.69 16 42 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 43 H 0.14 0.79 7.57 -52.49 -0.40 0.39 16 44 H 0.13 0.14 8.14 -51.93 -0.42 -0.29 16 45 H 0.13 0.15 8.14 -51.92 -0.42 -0.27 16 46 H 0.13 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.15 1.35 7.57 -52.49 -0.40 0.95 16 LS Contribution 384.80 15.07 5.80 5.80 Total: -1.00 -35.65 384.80 -9.50 -45.15 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -7.17 Total: -2.26 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -0.52 Total: -22.49 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: -0.33 Total: -38.16 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -2.17 Total: -24.56 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -4.49 Total: 20.19 kcal Atomic # 16 Polarization: 16.95 SS G_CDS: -0.62 Total: 16.33 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.65 -9.50 -45.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057909545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.809 kcal (2) G-P(sol) polarization free energy of solvation -35.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds